5BS1A

Crystal structure of rbcx-iia from chlamydomonas reinhardtii
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
123
structure length
118
Chain Sequence
MHIPADSFSGASPERKAAVALRSLFTFVAARVVLEQLQGTTYNQQAYLDLMDFLGTPMKGDGGDEWMAAVMRKNHALALRLMEVREAYLDEFEWGKTMEMASRETREANTRLMRAAAM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
source organism Chlamydomonas reinhardtii
publication title Structural Analysis of the Rubisco-Assembly Chaperone RbcX-II from Chlamydomonas reinhardtii.
pubmed doi rcsb
molecule keywords CrRbcX-IIa
total genus 37
structure length 118
sequence length 123
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-06-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 5bs1A00
3Q20A 3HYBA 5BS2A 2Z45A 2PEIA 2PEJA 4GR2A 3RG6C 2PY8A 2Z44A 2PEOA 2PEMA 2PEKA 2Z46A 5BS1A 4GR6A 2PENA 2PEQA
chains in the Genus database with same CATH superfamily
5CZDB 1VQ5P 2OARA 1X3OA 2KGCA 2N5HA 1T8KA 2EHSA 2VLNA 4HKGA 1Q86Q 3RG6C 2VLQA 1A8OA 1GPJA 2MR8A 3CPWO 5HGMA 3CC2P 3GJNA 4UHPB 2M8PA 1VQ6P 1M6EX 1QVFO 5HGLA 3EJDA 3P05A 4COCA 3G29A 3B4QA 4H2XC 4PWVB 4U0EA 2XT1A 1GXHA 2BUOA 1VQ8P 1BAJA 2JU2A 4CA3A 4U0AA 1QVGO 2LIUA 2FQ1A 2ERHA 2N5IA 5JPAA 5BS2A 4PXHB 1VQNP 5KP7B 5KP6B 4XFYA 4H2YC 4U0BA 1HQBA 3G21A 2N6ZA 2KGEA 1YJNP 3U43A 1GXGA 5EJDA 2FVFA 1ACPA 1KD1Q 3G4SP 2K0DX 3NTEA 2LL8A 2M8NA 4BPGA 2QEXP 2GZFA 2PEMA 3CCRP 1D1DA 3DPHA 2PEIA 1JJ2O 4BPFA 4BPHA 1RO2A 2VSQA 2JO0A 3CCSP 2FADA 2P9XA 3HYBA 3DS5A 1DV5A 4XROA 2GYKA 3CMEP 1VQLP 1VQKP 5F2NA 2KORA 3G71P 2K5XA 1IMQA 1S72P 2X2BA 1AUMA 1VKUA 2JYGA 3G1GA 1VQ9P 2K0YA 3M1MA 2DGYA 2KODA 1KLPA 5EW5E 2QNWA 1EIAA 1EOQA 2KOOA 4M0IA 2FACA 2PNGA 3DS0A 2L9FA 3VRLC 2PEOA 2Z46A 2VLPA 2XXMA 2Z44A 4PH1A 1M1KQ 1BXIA 4QNBA 4U0DA 3DS4A 2AFDA 2CWOA 1ZNVA 4IPYA 4IZ6A 4XFZA 3G26A 2AFEA 1VQ7P 2K94A 2EIAA 3G6EP 2BHVA 1MZ8A 4NEOA 2LPKA 1DNYA 1YITP 2K92A 1CEIA 4PH0A 2CNRA 3I55P 2PY8A 1AYIA 3H4EA 2N98A 1N8RQ 3HZQA 2GZEA 2CGQA 1W2BO 4DG9A 1YJ9P 2FQ2A 1NJIQ 1KQSO 1A43A 1NQ4A 2GDWA 2LTEA 3GZLA 1K30A 2GZGA 5KP8B 2MD9A 4R0MA 1HY8A 1E6JP 2GDYA 2LMLA 4QKOA 2ONTA 2CG5B 2FAEA 2L22A 1K73Q 2KG6A 3GZMA 2MVVA 5HGOA 2MF4A 2KGDA 2ROQA 2KG8A 3CC7P 2MVUA 3I56P 2FQ0A 4U0FA 5BS1A 2LKIA 2JU1A 1KC8Q 2MY5A 3H47A 2KGAA 1L0IA 3DTJA 2KW2A 4U0CA 5F2KA 1OR5A 1RO0A 2JGPA 2FVAA 2WPTA 1YIJP 1QRJA 1EMVA 1F80D 1AF8A 2K0XA 3WBHA 2JYLA 2KOPA 2VLOA 5HV8A 3CD6P 3CCVP 2GZIA 2AF8A 3OW2O 1IUQA 3H0DA 3CC4P 2JBGA 2GDXA 4F37A 2LOLA 2N50A 3LRYA 2GZJA 1VQPP 3G28A 2L0QA 2KR5A 2PEJA 2E1MA 3CCJP 2OTJP 4GR6A 3CCLP 2LF4A 2XZ0D 2KOQA 1FR2A 3B5IA 3EJEA 4XFXA 3CCEP 2L4BA 2M8LA 5I4TG 3G1IA 1M74A 2KOSA 1UJZA 4XRQA 1RNIA 2PEKA 2N6YA 2JQ4A 2DNWA 3RG2A 4GR2A 2AVAA 2QA4P 1Q81Q 2EG5A 1IMPA 1YHQP 7CEIA 1VQOP 5HVCA 2L6EA 1VQ4P 5HGNA 5DCKA 3DS3A 3CXCO 1E0HA 4MRTC 3DS2A 2PENA 3EJBA 3MGEA 1K9MQ 2K2QA 2KWLA 2M5RA 2FHSC 1Q7YQ 2EFJA 3CMAP 1Z6MA 1M90Q 1UNKA 2NO8A 3G0VA 1VQMP 2XZ1C 4WYMA 3E2DA 1YI2P 2Z45A 2K93A 3GKLC 2FVEA 1ZMBA 2JB0A 4H2WC 5F2OA 2CQ8A 2EHTA 2XV6A 3LMOA 2MR7A 1K8AQ 3DS1A 1VHNA 2PEQA 2LIWA 2OTLP 1L0HA 2KG9A 1M6NA 1YJWP 4COPA 3CCQP 3CCMP 2JAZA 3Q20A 3CCUP 3NY7B 1Q82Q 3CE7A
chains in the Genus database with same CATH topology
1VQ5P 4XROA 2OARA 3CMEP 1VQLP 2ONTA 1K73Q 1VQKP 5F2NA 4GR2A 3G71P 1Q86Q 3RG6C 1A8OA 2QA4P 5HGOA 3CPWO 1S72P 1Q81Q 5HGMA 3CC2P 1AUMA 2EG5A 3CC7P 2JYGA 1YHQP 3I56P 2M8PA 3G1GA 1VQOP 4U0FA 1VQ9P 3M1MA 2L6EA 2DGYA 1VQ4P 5BS1A 5HGNA 1VQ6P 1M6EX 2KODA 5DCKA 3DS3A 1QVFO 1KC8Q 3CXCO 5HGLA 3DS2A 2PENA 3P05A 4COCA 3G29A 3H47A 1EIAA 1EOQA 3MGEA 4M0IA 4U0EA 3DTJA 1K9MQ 2XT1A 4U0CA 5F2KA 3DS0A 3VRLC 2BUOA 2PEOA 1VQ8P 1RO0A 2Z46A 1Q7YQ 2EFJA 1BAJA 2XXMA 2Z44A 4PH1A 1M1KQ 3CMAP 1YIJP 4U0AA 1QRJA 4QNBA 1M90Q 4U0DA 3WBHA 3DS4A 1QVGO 2JYLA 2CWOA 3G0VA 4IPYA 1VQMP 4WYMA 5JPAA 3E2DA 5BS2A 1VQNP 4XFZA 3G26A 1VQ7P 3CD6P 3CCVP 3OW2O 4XFYA 2EIAA 4U0BA 1YI2P 1IUQA 3G21A 3G6EP 2BHVA 3H0DA 2Z45A 3CC4P 1YJNP 1ZMBA 1YITP 4PH0A 5F2OA 3LRYA 1VQPP 1KD1Q 2XV6A 3G28A 3G4SP 3NTEA 3I55P 1K8AQ 2M8NA 2PEJA 2E1MA 2QEXP 3DS1A 3CCJP 2PY8A 2OTJP 2PEMA 4GR6A 3CCRP 3CCLP 3DPHA 2LF4A 2PEQA 3H4EA 1N8RQ 1D1DA 3HZQA 2PEIA 2OTLP 3B5IA 1JJ2O 4XFXA 1W2BO 1YJ9P 1RO2A 3CCEP 1M6NA 1YJWP 4COPA 3CCQP 2M8LA 2JO0A 5I4TG 3CCMP 3G1IA 3CCSP 1NJIQ 1M74A 2P9XA 1KQSO 1A43A 3Q20A 3HYBA 4XRQA 1K30A 3CCUP 1RNIA 1Q82Q 2PEKA 3DS5A 1E6JP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q20 A;  3HYB A;  5BS2 A;  2Z45 A;  2PEI A;  2PEJ A;  4GR2 A;  3RG6 C;  2PY8 A;  2Z44 A;  2PEO A;  2PEM A;  2PEK A;  2Z46 A;  5BS1 A;  4GR6 A;  2PEN A;  2PEQ A; 
#chains in the Genus database with same CATH topology
 5CZD B;  1VQ5 P;  2OAR A;  1X3O A;  2KGC A;  2N5H A;  1T8K A;  2EHS A;  2VLN A;  4HKG A;  1Q86 Q;  3RG6 C;  2VLQ A;  1A8O A;  1GPJ A;  2MR8 A;  3CPW O;  5HGM A;  3CC2 P;  3GJN A;  4UHP B;  2M8P A;  1VQ6 P;  1M6E X;  1QVF O;  5HGL A;  3EJD A;  3P05 A;  4COC A;  3G29 A;  3B4Q A;  4H2X C;  4PWV B;  4U0E A;  2XT1 A;  1GXH A;  2BUO A;  1VQ8 P;  1BAJ A;  2JU2 A;  4CA3 A;  4U0A A;  1QVG O;  2LIU A;  2FQ1 A;  2ERH A;  2N5I A;  5JPA A;  5BS2 A;  4PXH B;  1VQN P;  5KP7 B;  5KP6 B;  4XFY A;  4H2Y C;  4U0B A;  1HQB A;  3G21 A;  2N6Z A;  2KGE A;  1YJN P;  3U43 A;  1GXG A;  5EJD A;  2FVF A;  1ACP A;  1KD1 Q;  3G4S P;  2K0D X;  3NTE A;  2LL8 A;  2M8N A;  4BPG A;  2QEX P;  2GZF A;  2PEM A;  3CCR P;  1D1D A;  3DPH A;  2PEI A;  1JJ2 O;  4BPF A;  4BPH A;  1RO2 A;  2VSQ A;  2JO0 A;  3CCS P;  2FAD A;  2P9X A;  3HYB A;  3DS5 A;  1DV5 A;  4XRO A;  2GYK A;  3CME P;  1VQL P;  1VQK P;  5F2N A;  2KOR A;  3G71 P;  2K5X A;  1IMQ A;  1S72 P;  2X2B A;  1AUM A;  1VKU A;  2JYG A;  3G1G A;  1VQ9 P;  2K0Y A;  3M1M A;  2DGY A;  2KOD A;  1KLP A;  5EW5 E;  2QNW A;  1EIA A;  1EOQ A;  2KOO A;  4M0I A;  2FAC A;  2PNG A;  3DS0 A;  2L9F A;  3VRL C;  2PEO A;  2Z46 A;  2VLP A;  2XXM A;  2Z44 A;  4PH1 A;  1M1K Q;  1BXI A;  4QNB A;  4U0D A;  3DS4 A;  2AFD A;  2CWO A;  1ZNV A;  4IPY A;  4IZ6 A;  4XFZ A;  3G26 A;  2AFE A;  1VQ7 P;  2K94 A;  2EIA A;  3G6E P;  2BHV A;  1MZ8 A;  4NEO A;  2LPK A;  1DNY A;  1YIT P;  2K92 A;  1CEI A;  4PH0 A;  2CNR A;  3I55 P;  2PY8 A;  1AYI A;  3H4E A;  2N98 A;  1N8R Q;  3HZQ A;  2GZE A;  2CGQ A;  1W2B O;  4DG9 A;  1YJ9 P;  2FQ2 A;  1NJI Q;  1KQS O;  1A43 A;  1NQ4 A;  2GDW A;  2LTE A;  3GZL A;  1K30 A;  2GZG A;  5KP8 B;  2MD9 A;  4R0M A;  1HY8 A;  1E6J P;  2GDY A;  2LML A;  4QKO A;  2ONT A;  2CG5 B;  2FAE A;  2L22 A;  1K73 Q;  2KG6 A;  3GZM A;  2MVV A;  5HGO A;  2MF4 A;  2KGD A;  2ROQ A;  2KG8 A;  3CC7 P;  2MVU A;  3I56 P;  2FQ0 A;  4U0F A;  5BS1 A;  2LKI A;  2JU1 A;  1KC8 Q;  2MY5 A;  3H47 A;  2KGA A;  1L0I A;  3DTJ A;  2KW2 A;  4U0C A;  5F2K A;  1OR5 A;  1RO0 A;  2JGP A;  2FVA A;  2WPT A;  1YIJ P;  1QRJ A;  1EMV A;  1F80 D;  1AF8 A;  2K0X A;  3WBH A;  2JYL A;  2KOP A;  2VLO A;  5HV8 A;  3CD6 P;  3CCV P;  2GZI A;  2AF8 A;  3OW2 O;  1IUQ A;  3H0D A;  3CC4 P;  2JBG A;  2GDX A;  4F37 A;  2LOL A;  2N50 A;  3LRY A;  2GZJ A;  1VQP P;  3G28 A;  2L0Q A;  2KR5 A;  2PEJ A;  2E1M A;  3CCJ P;  2OTJ P;  4GR6 A;  3CCL P;  2LF4 A;  2XZ0 D;  2KOQ A;  1FR2 A;  3B5I A;  3EJE A;  4XFX A;  3CCE P;  2L4B A;  2M8L A;  5I4T G;  3G1I A;  1M74 A;  2KOS A;  1UJZ A;  4XRQ A;  1RNI A;  2PEK A;  2N6Y A;  2JQ4 A;  2DNW A;  3RG2 A;  4GR2 A;  2AVA A;  2QA4 P;  1Q81 Q;  2EG5 A;  1IMP A;  1YHQ P;  7CEI A;  1VQO P;  5HVC A;  2L6E A;  1VQ4 P;  5HGN A;  5DCK A;  3DS3 A;  3CXC O;  1E0H A;  4MRT C;  3DS2 A;  2PEN A;  3EJB A;  3MGE A;  1K9M Q;  2K2Q A;  2KWL A;  2M5R A;  2FHS C;  1Q7Y Q;  2EFJ A;  3CMA P;  1Z6M A;  1M90 Q;  1UNK A;  2NO8 A;  3G0V A;  1VQM P;  2XZ1 C;  4WYM A;  3E2D A;  1YI2 P;  2Z45 A;  2K93 A;  3GKL C;  2FVE A;  1ZMB A;  2JB0 A;  4H2W C;  5F2O A;  2CQ8 A;  2EHT A;  2XV6 A;  3LMO A;  2MR7 A;  1K8A Q;  3DS1 A;  1VHN A;  2PEQ A;  2LIW A;  2OTL P;  1L0H A;  2KG9 A;  1M6N A;  1YJW P;  4COP A;  3CCQ P;  3CCM P;  2JAZ A;  3Q20 A;  3CCU P;  3NY7 B;  1Q82 Q;  3CE7 A; 
#chains in the Genus database with same CATH homology
 1VQ5 P;  4XRO A;  2OAR A;  3CME P;  1VQL P;  2ONT A;  1K73 Q;  1VQK P;  5F2N A;  4GR2 A;  3G71 P;  1Q86 Q;  3RG6 C;  1A8O A;  2QA4 P;  5HGO A;  3CPW O;  1S72 P;  1Q81 Q;  5HGM A;  3CC2 P;  1AUM A;  2EG5 A;  3CC7 P;  2JYG A;  1YHQ P;  3I56 P;  2M8P A;  3G1G A;  1VQO P;  4U0F A;  1VQ9 P;  3M1M A;  2L6E A;  2DGY A;  1VQ4 P;  5BS1 A;  5HGN A;  1VQ6 P;  1M6E X;  2KOD A;  5DCK A;  3DS3 A;  1QVF O;  1KC8 Q;  3CXC O;  5HGL A;  3DS2 A;  2PEN A;  3P05 A;  4COC A;  3G29 A;  3H47 A;  1EIA A;  1EOQ A;  3MGE A;  4M0I A;  4U0E A;  3DTJ A;  1K9M Q;  2XT1 A;  4U0C A;  5F2K A;  3DS0 A;  3VRL C;  2BUO A;  2PEO A;  1VQ8 P;  1RO0 A;  2Z46 A;  1Q7Y Q;  2EFJ A;  1BAJ A;  2XXM A;  2Z44 A;  4PH1 A;  1M1K Q;  3CMA P;  1YIJ P;  4U0A A;  1QRJ A;  4QNB A;  1M90 Q;  4U0D A;  3WBH A;  3DS4 A;  1QVG O;  2JYL A;  2CWO A;  3G0V A;  4IPY A;  1VQM P;  4WYM A;  5JPA A;  3E2D A;  5BS2 A;  1VQN P;  4XFZ A;  3G26 A;  1VQ7 P;  3CD6 P;  3CCV P;  3OW2 O;  4XFY A;  2EIA A;  4U0B A;  1YI2 P;  1IUQ A;  3G21 A;  3G6E P;  2BHV A;  3H0D A;  2Z45 A;  3CC4 P;  1YJN P;  1ZMB A;  1YIT P;  4PH0 A;  5F2O A;  3LRY A;  1VQP P;  1KD1 Q;  2XV6 A;  3G28 A;  3G4S P;  3NTE A;  3I55 P;  1K8A Q;  2M8N A;  2PEJ A;  2E1M A;  2QEX P;  3DS1 A;  3CCJ P;  2PY8 A;  2OTJ P;  2PEM A;  4GR6 A;  3CCR P;  3CCL P;  3DPH A;  2LF4 A;  2PEQ A;  3H4E A;  1N8R Q;  1D1D A;  3HZQ A;  2PEI A;  2OTL P;  3B5I A;  1JJ2 O;  4XFX A;  1W2B O;  1YJ9 P;  1RO2 A;  3CCE P;  1M6N A;  1YJW P;  4COP A;  3CCQ P;  2M8L A;  2JO0 A;  5I4T G;  3CCM P;  3G1I A;  3CCS P;  1NJI Q;  1M74 A;  2P9X A;  1KQS O;  1A43 A;  3Q20 A;  3HYB A;  4XRQ A;  1K30 A;  3CCU P;  1RNI A;  1Q82 Q;  2PEK A;  3DS5 A;  1E6J P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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