5BS1A

Crystal structure of rbcx-iia from chlamydomonas reinhardtii
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
123
structure length
118
Chain Sequence
MHIPADSFSGASPERKAAVALRSLFTFVAARVVLEQLQGTTYNQQAYLDLMDFLGTPMKGDGGDEWMAAVMRKNHALALRLMEVREAYLDEFEWGKTMEMASRETREANTRLMRAAAM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CrRbcX-IIa
publication title Structural Analysis of the Rubisco-Assembly Chaperone RbcX-II from Chlamydomonas reinhardtii.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
molecule tags Chaperone
total genus 37
structure length 118
sequence length 123
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-06-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 5bs1A00
2PEIA 2PEMA 2PENA 2PEOA 3RG6C 2PY8A 3Q20A 5BS1A 2Z46A 2Z45A 2PEKA 2PEJA 4GR2A 5BS2A 2Z44A 3HYBA 2PEQA 4GR6A
chains in the Genus database with same CATH superfamily
1VQ9P 2ERHA 1VQPP 2KOSA 1E0HA 2M8NA 1RO2A 2KGCA 2L4BA 2L9FA 3LMOA 2M8PA 1Z6MA 1VKUA 4U0BA 4NEOA 3G28A 2X2BA 3DS2A 3CCEP 1VQ4P 4U0FA 3DS0A 3E2DA 1N8RQ 1KQSO 2JYLA 4U0DA 1EOQA 2BHVA 3G4SP 5HGMA 2N5HA 3CC2P 1QVGO 1VQ8P 2N5IA 3DS5A 3B5IA 3GZMA 3CMAP 3I55P 1JJ2O 2VLQA 4U0EA 2DNWA 2CWOA 2KGDA 4PXHB 2KOPA 2CNRA 5EJDA 3U43A 1ZNVA 4XFYA 3CCUP 2Z44A 2VLNA 2LF4A 4F37A 2K92A 2LIWA 1A8OA 1Q81Q 5KP6B 1AYIA 2K94A 3G29A 1GPJA 1K30A 2DGYA 1KD1Q 2JO0A 2L6EA 1YJ9P 5BS1A 2LMLA 3HYBA 2JB0A 2GZEA 3CC7P 3CCQP 1UJZA 2PENA 1L0HA 3LRYA 1VQKP 3GZLA 1AUMA 4MRTC 3CCRP 2MD9A 2GZFA 1VQNP 2M5RA 2K0YA 4XROA 1K9MQ 3GKLC 2NO8A 2JBGA 1QVFO 2AFDA 1YHQP 3CC4P 2AFEA 1T8KA 3CCMP 2K5XA 2MR8A 2JGPA 1W2BO 2EFJA 2K2QA 1YJWP 5I4TG 2N98A 2LIUA 1HQBA 4COCA 2QNWA 3G21A 2OTLP 1CEIA 1BAJA 5JPAA 1KC8Q 1Q86Q 2FVAA 2GZJA 3CE7A 3G1IA 1E6JP 1UNKA 2L0QA 1QRJA 3DS4A 2JAZA 4BPGA 5KP7B 3G26A 4R0MA 3DS1A 2EIAA 1VQLP 2MY5A 2FVEA 5F2OA 2OARA 1S72P 3DPHA 2FACA 2EG5A 2KORA 3DTJA 2XZ1C 1F80D 3H0DA 2GZIA 1OR5A 1VHNA 2JU2A 1RO0A 1HY8A 1VQMP 1YJNP 2LPKA 1YI2P 2PEMA 2PEOA 3VRLC 2PEQA 2FADA 2KG9A 2JU1A 2ONTA 1VQOP 4GR6A 2AF8A 2N50A 1D1DA 2KGAA 2ROQA 2PEKA 4XRQA 3RG2A 4U0CA 1ACPA 2KOOA 1VQ7P 3M1MA 4GR2A 2EHSA 3G0VA 4PH0A 2FAEA 3NTEA 2CG5B 1VQ5P 1BXIA 1M90Q 2M8LA 1X3OA 2LL8A 2N6YA 1VQ6P 1EIAA 5CZDB 2GDYA 2FVFA 4HKGA 3EJDA 2PNGA 1NJIQ 1ZMBA 4IPYA 2PEIA 1M6NA 4XFXA 3HZQA 2AVAA 4BPFA 2GDWA 2QA4P 2KODA 3EJBA 1Q82Q 1KLPA 3G6EP 3P05A 1EMVA 1K8AQ 4UHPB 2CGQA 2VSQA 5HGNA 1IUQA 2PY8A 2Z46A 4XFZA 2EHTA 3B4QA 2KWLA 2KW2A 5F2KA 2MF4A 4H2WC 2GDXA 1NQ4A 4H2XC 2CQ8A 2PEJA 2LTEA 1YITP 1DV5A 2LOLA 2LKIA 2N6ZA 2MVUA 2GYKA 1FR2A 1IMPA 2P9XA 5F2NA 3H47A 5HGOA 2L22A 4DG9A 2FHSC 1AF8A 4U0AA 5HV8A 3CXCO 1DNYA 2JQ4A 4BPHA 2VLOA 5HVCA 1RNIA 2QEXP 1Q7YQ 1M1KQ 2OTJP 2XV6A 5BS2A 3GJNA 1K73Q 2KOQA 3CD6P 4QNBA 3CCLP 1M74A 2MR7A 2K93A 4M0IA 2E1MA 2K0XA 2FQ0A 1GXHA 2XT1A 3H4EA 4PWVB 2VLPA 3MGEA 2XXMA 3OW2O 2WPTA 3CMEP 4COPA 7CEIA 3I56P 3G71P 1L0IA 2KGEA 5KP8B 3Q20A 3WBHA 3NY7B 2GZGA 3CCVP 1MZ8A 5DCKA 2KR5A 2KG6A 5HGLA 1IMQA 2JYGA 1M6EX 3G1GA 4PH1A 4WYMA 3DS3A 1GXGA 2XZ0D 3EJEA 4H2YC 4IZ6A 2K0DX 2Z45A 2FQ1A 2MVVA 1YIJP 5EW5E 3CPWO 1A43A 4QKOA 3CCSP 2FQ2A 4CA3A 3RG6C 3CCJP 2BUOA 2KG8A
chains in the Genus database with same CATH topology
2P9XA 3G0VA 5F2NA 1VQ9P 3H47A 1VQPP 4XROA 5HGOA 4PH0A 1K9MQ 2M8NA 3NTEA 1VQ5P 1QVFO 1RO2A 1M90Q 4U0AA 1YHQP 3CC4P 3CCMP 2M8LA 3CXCO 1W2BO 1VQ6P 2EFJA 2M8PA 1YJWP 5I4TG 1EIAA 4U0BA 4COCA 3G28A 3G21A 1RNIA 1BAJA 2OTLP 5JPAA 2QEXP 1KC8Q 1Q7YQ 1M1KQ 1Q86Q 3DS2A 3CCEP 2OTJP 2XV6A 1VQ4P 1NJIQ 5BS2A 4U0FA 1K73Q 3DS0A 3G1IA 1E6JP 4QNBA 3CD6P 3E2DA 3CCLP 1QRJA 1ZMBA 1N8RQ 4IPYA 3DS4A 1KQSO 1M74A 2PEIA 2JYLA 4U0DA 1EOQA 3G26A 2BHVA 3DS1A 4M0IA 3G4SP 5HGMA 2EIAA 3CC2P 1QVGO 1VQ8P 1VQLP 1M6NA 2E1MA 4XFXA 3HZQA 3DS5A 2XT1A 3H4EA 3B5IA 3MGEA 3CMAP 2XXMA 3I55P 1JJ2O 3OW2O 5F2OA 2QA4P 2OARA 1S72P 3DPHA 2KODA 3CMEP 1Q82Q 2EG5A 4COPA 4U0EA 3DTJA 2CWOA 3I56P 3G71P 3G6EP 3Q20A 3P05A 4XFYA 3H0DA 3WBHA 3CCUP 1K8AQ 2Z44A 3CCVP 5HGNA 5DCKA 1IUQA 2PY8A 2LF4A 1RO0A 1A8OA 5HGLA 2Z46A 1VQMP 2JYGA 4XFZA 1YJNP 1Q81Q 1M6EX 1YI2P 2PEMA 2PEOA 3G1GA 4PH1A 4WYMA 3DS3A 3G29A 2PEQA 3VRLC 1K30A 5F2KA 2DGYA 2ONTA 1VQOP 1KD1Q 2JO0A 2L6EA 1YJ9P 5BS1A 2Z45A 2PEJA 3HYBA 4GR6A 1YIJP 1D1DA 3CC7P 1YITP 2PEKA 3CPWO 4XRQA 1A43A 3CCQP 3CCSP 2PENA 4U0CA 3RG6C 2BUOA 3CCJP 1VQ7P 3LRYA 1VQKP 1AUMA 3M1MA 3CCRP 1VQNP 4GR2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEI A;  2PEM A;  2PEN A;  2PEO A;  3RG6 C;  2PY8 A;  3Q20 A;  5BS1 A;  2Z46 A;  2Z45 A;  2PEK A;  2PEJ A;  4GR2 A;  5BS2 A;  2Z44 A;  3HYB A;  2PEQ A;  4GR6 A; 
#chains in the Genus database with same CATH topology
 1VQ9 P;  2ERH A;  1VQP P;  2KOS A;  1E0H A;  2M8N A;  1RO2 A;  2KGC A;  2L4B A;  2L9F A;  3LMO A;  2M8P A;  1Z6M A;  1VKU A;  4U0B A;  4NEO A;  3G28 A;  2X2B A;  3DS2 A;  3CCE P;  1VQ4 P;  4U0F A;  3DS0 A;  3E2D A;  1N8R Q;  1KQS O;  2JYL A;  4U0D A;  1EOQ A;  2BHV A;  3G4S P;  5HGM A;  2N5H A;  3CC2 P;  1QVG O;  1VQ8 P;  2N5I A;  3DS5 A;  3B5I A;  3GZM A;  3CMA P;  3I55 P;  1JJ2 O;  2VLQ A;  4U0E A;  2DNW A;  2CWO A;  2KGD A;  4PXH B;  2KOP A;  2CNR A;  5EJD A;  3U43 A;  1ZNV A;  4XFY A;  3CCU P;  2Z44 A;  2VLN A;  2LF4 A;  4F37 A;  2K92 A;  2LIW A;  1A8O A;  1Q81 Q;  5KP6 B;  1AYI A;  2K94 A;  3G29 A;  1GPJ A;  1K30 A;  2DGY A;  1KD1 Q;  2JO0 A;  2L6E A;  1YJ9 P;  5BS1 A;  2LML A;  3HYB A;  2JB0 A;  2GZE A;  3CC7 P;  3CCQ P;  1UJZ A;  2PEN A;  1L0H A;  3LRY A;  1VQK P;  3GZL A;  1AUM A;  4MRT C;  3CCR P;  2MD9 A;  2GZF A;  1VQN P;  2M5R A;  2K0Y A;  4XRO A;  1K9M Q;  3GKL C;  2NO8 A;  2JBG A;  1QVF O;  2AFD A;  1YHQ P;  3CC4 P;  2AFE A;  1T8K A;  3CCM P;  2K5X A;  2MR8 A;  2JGP A;  1W2B O;  2EFJ A;  2K2Q A;  1YJW P;  5I4T G;  2N98 A;  2LIU A;  1HQB A;  4COC A;  2QNW A;  3G21 A;  2OTL P;  1CEI A;  1BAJ A;  5JPA A;  1KC8 Q;  1Q86 Q;  2FVA A;  2GZJ A;  3CE7 A;  3G1I A;  1E6J P;  1UNK A;  2L0Q A;  1QRJ A;  3DS4 A;  2JAZ A;  4BPG A;  5KP7 B;  3G26 A;  4R0M A;  3DS1 A;  2EIA A;  1VQL P;  2MY5 A;  2FVE A;  5F2O A;  2OAR A;  1S72 P;  3DPH A;  2FAC A;  2EG5 A;  2KOR A;  3DTJ A;  2XZ1 C;  1F80 D;  3H0D A;  2GZI A;  1OR5 A;  1VHN A;  2JU2 A;  1RO0 A;  1HY8 A;  1VQM P;  1YJN P;  2LPK A;  1YI2 P;  2PEM A;  2PEO A;  3VRL C;  2PEQ A;  2FAD A;  2KG9 A;  2JU1 A;  2ONT A;  1VQO P;  4GR6 A;  2AF8 A;  2N50 A;  1D1D A;  2KGA A;  2ROQ A;  2PEK A;  4XRQ A;  3RG2 A;  4U0C A;  1ACP A;  2KOO A;  1VQ7 P;  3M1M A;  4GR2 A;  2EHS A;  3G0V A;  4PH0 A;  2FAE A;  3NTE A;  2CG5 B;  1VQ5 P;  1BXI A;  1M90 Q;  2M8L A;  1X3O A;  2LL8 A;  2N6Y A;  1VQ6 P;  1EIA A;  5CZD B;  2GDY A;  2FVF A;  4HKG A;  3EJD A;  2PNG A;  1NJI Q;  1ZMB A;  4IPY A;  2PEI A;  1M6N A;  4XFX A;  3HZQ A;  2AVA A;  4BPF A;  2GDW A;  2QA4 P;  2KOD A;  3EJB A;  1Q82 Q;  1KLP A;  3G6E P;  3P05 A;  1EMV A;  1K8A Q;  4UHP B;  2CGQ A;  2VSQ A;  5HGN A;  1IUQ A;  2PY8 A;  2Z46 A;  4XFZ A;  2EHT A;  3B4Q A;  2KWL A;  2KW2 A;  5F2K A;  2MF4 A;  4H2W C;  2GDX A;  1NQ4 A;  4H2X C;  2CQ8 A;  2PEJ A;  2LTE A;  1YIT P;  1DV5 A;  2LOL A;  2LKI A;  2N6Z A;  2MVU A;  2GYK A;  1FR2 A;  1IMP A;  2P9X A;  5F2N A;  3H47 A;  5HGO A;  2L22 A;  4DG9 A;  2FHS C;  1AF8 A;  4U0A A;  5HV8 A;  3CXC O;  1DNY A;  2JQ4 A;  4BPH A;  2VLO A;  5HVC A;  1RNI A;  2QEX P;  1Q7Y Q;  1M1K Q;  2OTJ P;  2XV6 A;  5BS2 A;  3GJN A;  1K73 Q;  2KOQ A;  3CD6 P;  4QNB A;  3CCL P;  1M74 A;  2MR7 A;  2K93 A;  4M0I A;  2E1M A;  2K0X A;  2FQ0 A;  1GXH A;  2XT1 A;  3H4E A;  4PWV B;  2VLP A;  3MGE A;  2XXM A;  3OW2 O;  2WPT A;  3CME P;  4COP A;  7CEI A;  3I56 P;  3G71 P;  1L0I A;  2KGE A;  5KP8 B;  3Q20 A;  3WBH A;  3NY7 B;  2GZG A;  3CCV P;  1MZ8 A;  5DCK A;  2KR5 A;  2KG6 A;  5HGL A;  1IMQ A;  2JYG A;  1M6E X;  3G1G A;  4PH1 A;  4WYM A;  3DS3 A;  1GXG A;  2XZ0 D;  3EJE A;  4H2Y C;  4IZ6 A;  2K0D X;  2Z45 A;  2FQ1 A;  2MVV A;  1YIJ P;  5EW5 E;  3CPW O;  1A43 A;  4QKO A;  3CCS P;  2FQ2 A;  4CA3 A;  3RG6 C;  3CCJ P;  2BUO A;  2KG8 A; 
#chains in the Genus database with same CATH homology
 2P9X A;  3G0V A;  5F2N A;  1VQ9 P;  3H47 A;  1VQP P;  4XRO A;  5HGO A;  4PH0 A;  1K9M Q;  2M8N A;  3NTE A;  1VQ5 P;  1QVF O;  1RO2 A;  1M90 Q;  4U0A A;  1YHQ P;  3CC4 P;  3CCM P;  2M8L A;  3CXC O;  1W2B O;  1VQ6 P;  2EFJ A;  2M8P A;  1YJW P;  5I4T G;  1EIA A;  4U0B A;  4COC A;  3G28 A;  3G21 A;  1RNI A;  1BAJ A;  2OTL P;  5JPA A;  2QEX P;  1KC8 Q;  1Q7Y Q;  1M1K Q;  1Q86 Q;  3DS2 A;  3CCE P;  2OTJ P;  2XV6 A;  1VQ4 P;  1NJI Q;  5BS2 A;  4U0F A;  1K73 Q;  3DS0 A;  3G1I A;  1E6J P;  4QNB A;  3CD6 P;  3E2D A;  3CCL P;  1QRJ A;  1ZMB A;  1N8R Q;  4IPY A;  3DS4 A;  1KQS O;  1M74 A;  2PEI A;  2JYL A;  4U0D A;  1EOQ A;  3G26 A;  2BHV A;  3DS1 A;  4M0I A;  3G4S P;  5HGM A;  2EIA A;  3CC2 P;  1QVG O;  1VQ8 P;  1VQL P;  1M6N A;  2E1M A;  4XFX A;  3HZQ A;  3DS5 A;  2XT1 A;  3H4E A;  3B5I A;  3MGE A;  3CMA P;  2XXM A;  3I55 P;  1JJ2 O;  3OW2 O;  5F2O A;  2QA4 P;  2OAR A;  1S72 P;  3DPH A;  2KOD A;  3CME P;  1Q82 Q;  2EG5 A;  4COP A;  4U0E A;  3DTJ A;  2CWO A;  3I56 P;  3G71 P;  3G6E P;  3Q20 A;  3P05 A;  4XFY A;  3H0D A;  3WBH A;  3CCU P;  1K8A Q;  2Z44 A;  3CCV P;  5HGN A;  5DCK A;  1IUQ A;  2PY8 A;  2LF4 A;  1RO0 A;  1A8O A;  5HGL A;  2Z46 A;  1VQM P;  2JYG A;  4XFZ A;  1YJN P;  1Q81 Q;  1M6E X;  1YI2 P;  2PEM A;  2PEO A;  3G1G A;  4PH1 A;  4WYM A;  3DS3 A;  3G29 A;  2PEQ A;  3VRL C;  1K30 A;  5F2K A;  2DGY A;  2ONT A;  1VQO P;  1KD1 Q;  2JO0 A;  2L6E A;  1YJ9 P;  5BS1 A;  2Z45 A;  2PEJ A;  3HYB A;  4GR6 A;  1YIJ P;  1D1D A;  3CC7 P;  1YIT P;  2PEK A;  3CPW O;  4XRQ A;  1A43 A;  3CCQ P;  3CCS P;  2PEN A;  4U0C A;  3RG6 C;  2BUO A;  3CCJ P;  1VQ7 P;  3LRY A;  1VQK P;  1AUM A;  3M1M A;  3CCR P;  1VQN P;  4GR2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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