5BTQA

Crystal structure of human heme oxygenase 1 h25r with biliverdin bound
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
213
structure length
213
Chain Sequence
QDLSEALKEATKEVRTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis
pubmed doi rcsb
source organism Homo sapiens
total genus 84
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2015-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 5btqA00
1XK1A 1TO9A 2GM7A 3K4FA 1XK3A 1ULXA 1S13A 1IX4A 2RD3A 1YAKA 1P3UA 3MVUA 4G7PA 4GOHA 3B5PA 4WWZA 3I9TA 2Z68A 2F2GA 1WNVA 1IW0A 1N3UA 1OZWA 1OZEA 1WWMA 2GM8A 4LQXA 1TO9B 1SK7A 4GPFA 1OYKA 2Q32A 3RM5A 1N45A 2A2MA 3BJDA 2QCXA 3B5OA 1TWNA 3NO6A 1XK0A 1P3TA 2QPPA 1WOXA 3HOKA 3MOOA 1Z72A 1UDDA 1OZLA 5BTQA 1NI6A 2QZCA 3IBXA 1J02A 4G8PA 1P3VA 4G98A 4FN6A 1WZGA 3HNHA 1J2CA 1IVJA 4G7TA 4G8WA 3HMLA 1IX3A 3HLXA 1WNWA 3OQLA 1XJZA 1XK2A 4G99A 4G7LA 4WMHA 4RAJA 3CZYA 1WZDA 2ZVUA 1OZRA 1TYHA 1OTVA 4WX0A 1V8XA 3I9UA 1OYLA 1WZFA 1OTWA 1UBBA 1J77A 1TWRA 2A2OA 4WWJA 1WOVA 3I8RA 2E7EA 4NY7A 4G7UA 1YAFA 2RGZA 1DVEA 1RCWA 4WD4A 1S8CA 1DVGA 1WNXA 3TGMA 4GPCA 4G8UA 2Q4XA 4GPHA 4MECA 1RTWA 3DDEA 1T5PA 1WOWA 2DY5A 1WE1A 1VGIA 1IW1A 1IRMA 2A6BA
chains in the Genus database with same CATH superfamily
1XK1A 1TO9A 2GM7A 3K4FA 1XK3A 1ULXA 1S13A 1IX4A 2RD3A 1YAKA 1P3UA 3MVUA 4G7PA 4GOHA 3B5PA 4WWZA 3I9TA 2Z68A 2F2GA 1WNVA 1IW0A 1N3UA 1OZWA 1OZEA 1WWMA 2GM8A 4LQXA 1TO9B 1SK7A 4GPFA 1OYKA 2Q32A 3RM5A 1N45A 2A2MA 3BJDA 2QCXA 3B5OA 1TWNA 3NO6A 1XK0A 1P3TA 2QPPA 1WOXA 3HOKA 3MOOA 1Z72A 1UDDA 1OZLA 5BTQA 1NI6A 2QZCA 3IBXA 1J02A 4G8PA 1P3VA 4G98A 4FN6A 1WZGA 3HNHA 1J2CA 1IVJA 4G7TA 4G8WA 3HMLA 1IX3A 3HLXA 1WNWA 3OQLA 1XJZA 1XK2A 4G99A 4G7LA 4WMHA 4RAJA 3CZYA 1WZDA 2ZVUA 1OZRA 1TYHA 1OTVA 4WX0A 1V8XA 3I9UA 1OYLA 1WZFA 1OTWA 1UBBA 1J77A 2LCUA 1TWRA 2A2OA 4WWJA 1WOVA 3I8RA 2E7EA 4NY7A 4G7UA 1YAFA 2RGZA 1DVEA 1RCWA 4WD4A 1S8CA 1DVGA 1WNXA 3TGMA 4GPCA 4G8UA 2Q4XA 4GPHA 4MECA 1RTWA 3DDEA 1T5PA 1WOWA 2DY5A 1WE1A 1VGIA 1IW1A 1IRMA 2A6BA
chains in the Genus database with same CATH topology
1XK1A 1TO9A 2GM7A 3K4FA 1XK3A 1ULXA 1S13A 1IX4A 2RD3A 1YAKA 1P3UA 3MVUA 4G7PA 4GOHA 3B5PA 4WWZA 3I9TA 2Z68A 2F2GA 1WNVA 1IW0A 1N3UA 1OZWA 1OZEA 1WWMA 2GM8A 4LQXA 1TO9B 1SK7A 4GPFA 1OYKA 2Q32A 3RM5A 1N45A 2A2MA 3BJDA 2QCXA 3B5OA 1TWNA 3NO6A 1XK0A 1P3TA 2QPPA 1WOXA 3HOKA 3MOOA 1Z72A 1UDDA 1OZLA 5BTQA 1NI6A 2QZCA 3IBXA 1J02A 4G8PA 1P3VA 4G98A 4FN6A 1WZGA 3HNHA 1J2CA 1IVJA 4G7TA 4G8WA 3HMLA 1IX3A 3HLXA 1WNWA 3OQLA 1XJZA 1XK2A 4G99A 4G7LA 4WMHA 4RAJA 3CZYA 1WZDA 2ZVUA 1OZRA 1TYHA 1OTVA 4WX0A 1V8XA 3I9UA 1OYLA 1WZFA 1OTWA 1UBBA 1J77A 1TWRA 2A2OA 4WWJA 1WOVA 3I8RA 2E7EA 4NY7A 4G7UA 1YAFA 2RGZA 1DVEA 1RCWA 4WD4A 1S8CA 1DVGA 1WNXA 3TGMA 4GPCA 4G8UA 2Q4XA 4GPHA 4MECA 1RTWA 3DDEA 1T5PA 1WOWA 2DY5A 1WE1A 1VGIA 1IW1A 1IRMA 2A6BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XK1 A;  1TO9 A;  2GM7 A;  3K4F A;  1XK3 A;  1ULX A;  1S13 A;  1IX4 A;  2RD3 A;  1YAK A;  1P3U A;  3MVU A;  4G7P A;  4GOH A;  3B5P A;  4WWZ A;  3I9T A;  2Z68 A;  2F2G A;  1WNV A;  1IW0 A;  1N3U A;  1OZW A;  1OZE A;  1WWM A;  2GM8 A;  4LQX A;  1TO9 B;  1SK7 A;  4GPF A;  1OYK A;  2Q32 A;  3RM5 A;  1N45 A;  2A2M A;  3BJD A;  2QCX A;  3B5O A;  1TWN A;  3NO6 A;  1XK0 A;  1P3T A;  2QPP A;  1WOX A;  3HOK A;  3MOO A;  1Z72 A;  1UDD A;  1OZL A;  5BTQ A;  1NI6 A;  2QZC A;  3IBX A;  1J02 A;  4G8P A;  1P3V A;  4G98 A;  4FN6 A;  1WZG A;  3HNH A;  1J2C A;  1IVJ A;  4G7T A;  4G8W A;  3HML A;  1IX3 A;  3HLX A;  1WNW A;  3OQL A;  1XJZ A;  1XK2 A;  4G99 A;  4G7L A;  4WMH A;  4RAJ A;  3CZY A;  1WZD A;  2ZVU A;  1OZR A;  1TYH A;  1OTV A;  4WX0 A;  1V8X A;  3I9U A;  1OYL A;  1WZF A;  1OTW A;  1UBB A;  1J77 A;  1TWR A;  2A2O A;  4WWJ A;  1WOV A;  3I8R A;  2E7E A;  4NY7 A;  4G7U A;  1YAF A;  2RGZ A;  1DVE A;  1RCW A;  4WD4 A;  1S8C A;  1DVG A;  1WNX A;  3TGM A;  4GPC A;  4G8U A;  2Q4X A;  4GPH A;  4MEC A;  1RTW A;  3DDE A;  1T5P A;  1WOW A;  2DY5 A;  1WE1 A;  1VGI A;  1IW1 A;  1IRM A;  2A6B A; 
#chains in the Genus database with same CATH topology
 1XK1 A;  1TO9 A;  2GM7 A;  3K4F A;  1XK3 A;  1ULX A;  1S13 A;  1IX4 A;  2RD3 A;  1YAK A;  1P3U A;  3MVU A;  4G7P A;  4GOH A;  3B5P A;  4WWZ A;  3I9T A;  2Z68 A;  2F2G A;  1WNV A;  1IW0 A;  1N3U A;  1OZW A;  1OZE A;  1WWM A;  2GM8 A;  4LQX A;  1TO9 B;  1SK7 A;  4GPF A;  1OYK A;  2Q32 A;  3RM5 A;  1N45 A;  2A2M A;  3BJD A;  2QCX A;  3B5O A;  1TWN A;  3NO6 A;  1XK0 A;  1P3T A;  2QPP A;  1WOX A;  3HOK A;  3MOO A;  1Z72 A;  1UDD A;  1OZL A;  5BTQ A;  1NI6 A;  2QZC A;  3IBX A;  1J02 A;  4G8P A;  1P3V A;  4G98 A;  4FN6 A;  1WZG A;  3HNH A;  1J2C A;  1IVJ A;  4G7T A;  4G8W A;  3HML A;  1IX3 A;  3HLX A;  1WNW A;  3OQL A;  1XJZ A;  1XK2 A;  4G99 A;  4G7L A;  4WMH A;  4RAJ A;  3CZY A;  1WZD A;  2ZVU A;  1OZR A;  1TYH A;  1OTV A;  4WX0 A;  1V8X A;  3I9U A;  1OYL A;  1WZF A;  1OTW A;  1UBB A;  1J77 A;  2LCU A;  1TWR A;  2A2O A;  4WWJ A;  1WOV A;  3I8R A;  2E7E A;  4NY7 A;  4G7U A;  1YAF A;  2RGZ A;  1DVE A;  1RCW A;  4WD4 A;  1S8C A;  1DVG A;  1WNX A;  3TGM A;  4GPC A;  4G8U A;  2Q4X A;  4GPH A;  4MEC A;  1RTW A;  3DDE A;  1T5P A;  1WOW A;  2DY5 A;  1WE1 A;  1VGI A;  1IW1 A;  1IRM A;  2A6B A; 
#chains in the Genus database with same CATH homology
 1XK1 A;  1TO9 A;  2GM7 A;  3K4F A;  1XK3 A;  1ULX A;  1S13 A;  1IX4 A;  2RD3 A;  1YAK A;  1P3U A;  3MVU A;  4G7P A;  4GOH A;  3B5P A;  4WWZ A;  3I9T A;  2Z68 A;  2F2G A;  1WNV A;  1IW0 A;  1N3U A;  1OZW A;  1OZE A;  1WWM A;  2GM8 A;  4LQX A;  1TO9 B;  1SK7 A;  4GPF A;  1OYK A;  2Q32 A;  3RM5 A;  1N45 A;  2A2M A;  3BJD A;  2QCX A;  3B5O A;  1TWN A;  3NO6 A;  1XK0 A;  1P3T A;  2QPP A;  1WOX A;  3HOK A;  3MOO A;  1Z72 A;  1UDD A;  1OZL A;  5BTQ A;  1NI6 A;  2QZC A;  3IBX A;  1J02 A;  4G8P A;  1P3V A;  4G98 A;  4FN6 A;  1WZG A;  3HNH A;  1J2C A;  1IVJ A;  4G7T A;  4G8W A;  3HML A;  1IX3 A;  3HLX A;  1WNW A;  3OQL A;  1XJZ A;  1XK2 A;  4G99 A;  4G7L A;  4WMH A;  4RAJ A;  3CZY A;  1WZD A;  2ZVU A;  1OZR A;  1TYH A;  1OTV A;  4WX0 A;  1V8X A;  3I9U A;  1OYL A;  1WZF A;  1OTW A;  1UBB A;  1J77 A;  1TWR A;  2A2O A;  4WWJ A;  1WOV A;  3I8R A;  2E7E A;  4NY7 A;  4G7U A;  1YAF A;  2RGZ A;  1DVE A;  1RCW A;  4WD4 A;  1S8C A;  1DVG A;  1WNX A;  3TGM A;  4GPC A;  4G8U A;  2Q4X A;  4GPH A;  4MEC A;  1RTW A;  3DDE A;  1T5P A;  1WOW A;  2DY5 A;  1WE1 A;  1VGI A;  1IW1 A;  1IRM A;  2A6B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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