5BW0B

The crystal structure of minor pseudopilin binary complex of xcpv and xcpw from the type 2 secretion system of pseudomonas aeruginosa
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
91
structure length
89
Chain Sequence
NASRLEDKTLAMWIADNRLNELQLEQTPPSSGRNQGELEFAGRRWEWRTQVDSTAEQDMRRVIVWVAAKPLGRGSIEERAAARLVGFLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Type II secretion system protein J
publication title Structure-guided disruption of the pseudopilus tip complex inhibits the Type II secretion in Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 19
structure length 89
sequence length 91
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2015-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02501 T2SSI Type II secretion system (T2SS), protein I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 5bw0B00
2GR8A 5BW0B 2GR7A 3EMOA 2LMEA 3CFIA 3CI0I 3CI0K 2RETA
chains in the Genus database with same CATH superfamily
4EFKA 2G3DA 2A53A 3LF4A 2G5ZA 3IVXA 3IMGA 3Q10A 5G2FA 2GW4A 3HL6A 4DE5A 3N8HA 3IODA 1N2GA 3IOCA 2IECA 3AG5A 3CI0K 5HG0A 1N2JA 3IVGA 1N2HA 4DDHA 3IOEA 3LE8A 2A7XA 2GR8A 2A88A 4FZJA 2A50A 3ISJA 5BW0B 3COVA 2A86A 3CFAL 4IXJA 4MUKA 2I52A 4MUIA 3UY4A 2G2SA 4MUGA 3CFHL 3INNA 3MUEA 3CFFL 1IHOA 1N2EA 5KWVA 4G5FA 2A52A 3UA0A 5EXCA 2G16A 1MOPA 4MUNA 3UK2A 3COZA 2GR7A 4MUJA 2A84A 2A54A 2RETA 4DDMA 1V8FA 4MUHA 3CFIA 3COWA 1N2IA 3IMEA 1N2BA 2A56A 3IVCA 2EJCA 1N2OA 4MQ6A 3IUEA 4DDKA 4G5YA 4MULA 3Q12A 3QTTA 4BHRA 2LMEA 2X3FA 1UFVA 3IMCA 4EF6A 2OGFA 3IUBA 3AG6A 3COYA 3MXTA 4MUEA 3EMOA 3IOBA 4MUFA 3CI0I
chains in the Genus database with same CATH topology
2GR8A 5BW0B 2GR7A 3EMOA 2LMEA 3CFIA 3CI0I 3CI0J 3CI0K 2RETA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GR8 A;  5BW0 B;  2GR7 A;  3EMO A;  2LME A;  3CFI A;  3CI0 I;  3CI0 K;  2RET A; 
#chains in the Genus database with same CATH topology
 4EFK A;  2G3D A;  2A53 A;  3LF4 A;  2G5Z A;  3IVX A;  3IMG A;  3Q10 A;  5G2F A;  2GW4 A;  3HL6 A;  4DE5 A;  3N8H A;  3IOD A;  1N2G A;  3IOC A;  2IEC A;  3AG5 A;  3CI0 K;  5HG0 A;  1N2J A;  3IVG A;  1N2H A;  4DDH A;  3IOE A;  3LE8 A;  2A7X A;  2GR8 A;  2A88 A;  4FZJ A;  2A50 A;  3ISJ A;  5BW0 B;  3COV A;  2A86 A;  3CFA L;  4IXJ A;  4MUK A;  2I52 A;  4MUI A;  3UY4 A;  2G2S A;  4MUG A;  3CFH L;  3INN A;  3MUE A;  3CFF L;  1IHO A;  1N2E A;  5KWV A;  4G5F A;  2A52 A;  3UA0 A;  5EXC A;  2G16 A;  1MOP A;  4MUN A;  3UK2 A;  3COZ A;  2GR7 A;  4MUJ A;  2A84 A;  2A54 A;  2RET A;  4DDM A;  1V8F A;  4MUH A;  3CFI A;  3COW A;  1N2I A;  3IME A;  1N2B A;  2A56 A;  3IVC A;  2EJC A;  1N2O A;  4MQ6 A;  3IUE A;  4DDK A;  4G5Y A;  4MUL A;  3Q12 A;  3QTT A;  4BHR A;  2LME A;  2X3F A;  1UFV A;  3IMC A;  4EF6 A;  2OGF A;  3IUB A;  3AG6 A;  3COY A;  3MXT A;  4MUE A;  3EMO A;  3IOB A;  4MUF A;  3CI0 I; 
#chains in the Genus database with same CATH homology
 2GR8 A;  5BW0 B;  2GR7 A;  3EMO A;  2LME A;  3CFI A;  3CI0 I;  3CI0 J;  3CI0 K;  2RET A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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