5BW2A

X-ray crystal structure of aplysia californica acetylcholine binding protein (ac-achbp) y55w in complex with 2-pyridin-3-yl-1-aza-bicyclo[2.2.2]octane; 2-(3-pyridyl)quinuclidine; 2-pq (ti-4699)
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
212
structure length
211
Chain Sequence
DKLHSQANLMRLKSDLFNRSMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine binding protein
source organism Aplysia californica
publication title Comparisons of Binding Affinities for Neuronal Nicotinic Receptors (NNRs) and AChBPs
rcsb
molecule keywords Soluble acetylcholine receptor
total genus 52
structure length 211
sequence length 212
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5bw2A00
5HCMA 2ZJVA 5AFNA 3RQUA 2XQ9A 5AFKA 3ZDGA 3U8LA 5BW2A 2BR8A 5AFLA 3PMZA 2YKSA 3TLVA 5J5HA 3WTKA 4QABA 4IL9A 3U8JA 3WTNA 3RIFA 4UM3S 3EHZA 5L4EA 2XZ5A 3UUBA 3UU4A 4AFGA 3IGQA 5KE4A 4TWHA 2Y7YA 4UXUA 2W8FA 2WN9A 4LMJA 4TNVA 5J5IA 3SIOA 3ZDHA 2XQ4A 3UU3A 5IUXA 3ZKRA 2VL0A 4ZZBA 2XQ3A 2XYSA 3T4MA 2PGZA 3TLTA 5FJVA 2XNVA 4ZR6A 3UQ7A 4DBMA 2BYSA 4ZJTA 5BRXA 2BYRA 2XZ6A 4TNWA 3UQ4A 3SQ9A 2BYQA 4F8HA 2BR7A 5L4HA 4PIRA 4ALXA 3RQWA 3TLWA 4HFHA 4ILCA 3SQ6A 4ZK1A 4COFA 4HQPA 5BP0A 2WNLA 2BG9B 2WZYA 3WTMA 3WIPA 5J5GA 2Y54A 4A97A 5AFHA 3P50A 3P4WA 4TWDA 2XQ8A 3EI0A 3WTHA 1I9BA 4HFBA 2C9TA 4BQTA 3LSVA 3C79A 2W8GA 4QH5A 2YMDA 4ILAA 2XNTA 4LMLA 4QH1A 1UW6A 2Y58A 3RI5A 2X00A 2YMEA 3WTIA 2XQAA 2YOEA 5AFMB 2BJ0A 3U8MA 2X00D 3WTLA 4ZK4A 2XQ5A 3U8KA 4BFQA 4ZZCA 2Y57A 5J0ZA 2BG9A 2Y56A 2XNUA 4XK9A 5KZUA 5L47A 5LXBA 3U8NA 4ILBA 3EAMA 4X5TA 4NZBA 2PH9A 3TLSA 5TVCA 2QC1B 5SYOA 3WTJA 4LMKA 4UM1A 2YN6A 4AFHA 5J5FA 4ZJSA 4Z90A 4A98A 3GUAA 1UV6A 5HEOA 2BYNA 3TLUA 2WNCA 5HCJA 2BYPA 4D01A 2XQ6A 3UU6A 2BG9E 4HFEA 5AFMA 5CO5A 3WTOA 4B5DA 4UM3A 2XQ7A 4UY2A 5AINA 4IREA 4QH4A 3JADA 5JMEA 4HFCA 3JAFA 4NPPA 2WNJA 4HFIA 5HEGA 3RHWA 2BG9C 3JAEA 5LG3A 4ZRUA 3RIAA 4AFTA 5HEUA 4QACA 5HEHA 5HEJA 2UZ6A 4QAAA 1UX2A 4XHEA 5AFJA 3C84A 3PEOA 4WV9A 4UM3P 3UU8A 5CFBA 4EZ1A 4FRRA 3SH1A 4TWFA 3UU5A 2XYTA 4Z91A 4IL4A 4HFDA 2ZJUA
chains in the Genus database with same CATH superfamily
5HCMA 2ZJVA 5AFNA 3RQUA 2XQ9A 5AFKA 3ZDGA 3U8LA 5BW2A 2BR8A 5AFLA 3PMZA 2YKSA 3TLVA 5J5HA 3WTKA 4QABA 4IL9A 3U8JA 3WTNA 3RIFA 4UM3S 3EHZA 5L4EA 2XZ5A 3UUBA 3UU4A 4AFGA 3IGQA 5KE4A 4TWHA 2Y7YA 4UXUA 2W8FA 2WN9A 4LMJA 4TNVA 5J5IA 3SIOA 3ZDHA 2XQ4A 3UU3A 5IUXA 3ZKRA 2VL0A 4ZZBA 2XQ3A 2XYSA 3T4MA 2PGZA 3TLTA 5FJVA 2XNVA 4ZR6A 3UQ7A 4DBMA 2BYSA 4ZJTA 5BRXA 2BYRA 2XZ6A 4TNWA 3UQ4A 3SQ9A 2BYQA 4F8HA 2BR7A 5L4HA 4PIRA 4ALXA 3RQWA 3TLWA 4HFHA 4ILCA 3SQ6A 4ZK1A 4COFA 4HQPA 5BP0A 2WNLA 2BG9B 2WZYA 3WTMA 3WIPA 5J5GA 2Y54A 4A97A 5AFHA 3P50A 3P4WA 4TWDA 2XQ8A 3EI0A 3WTHA 1I9BA 4HFBA 2C9TA 4BQTA 3LSVA 3C79A 2W8GA 4QH5A 2YMDA 4ILAA 2XNTA 4LMLA 4QH1A 1UW6A 2Y58A 3RI5A 2X00A 2YMEA 3WTIA 2XQAA 2YOEA 5AFMB 2BJ0A 3U8MA 2X00D 3WTLA 4ZK4A 2XQ5A 3U8KA 4BFQA 4ZZCA 2Y57A 5J0ZA 2BG9A 2Y56A 2XNUA 4XK9A 5KZUA 5L47A 5LXBA 3U8NA 4ILBA 3EAMA 4X5TA 4NZBA 2PH9A 3TLSA 5TVCA 2QC1B 5SYOA 3WTJA 4LMKA 4UM1A 2YN6A 4AFHA 5J5FA 4ZJSA 4Z90A 4A98A 3GUAA 1UV6A 5HEOA 2BYNA 3TLUA 2WNCA 5HCJA 2BYPA 4D01A 2XQ6A 3UU6A 2BG9E 4HFEA 5AFMA 5CO5A 3WTOA 4B5DA 4UM3A 2XQ7A 4UY2A 5AINA 4IREA 4QH4A 3JADA 5JMEA 4HFCA 3JAFA 4NPPA 2WNJA 4HFIA 5HEGA 3RHWA 2BG9C 3JAEA 5LG3A 4ZRUA 3RIAA 4AFTA 5HEUA 4QACA 5HEHA 5HEJA 2UZ6A 4QAAA 1UX2A 4XHEA 5AFJA 3C84A 3PEOA 4WV9A 4UM3P 3UU8A 5CFBA 4EZ1A 4FRRA 3SH1A 4TWFA 3UU5A 2XYTA 4Z91A 4IL4A 4HFDA 2ZJUA
chains in the Genus database with same CATH topology
5HCMA 2ZJVA 5AFNA 3RQUA 2XQ9A 5AFKA 3ZDGA 3U8LA 5BW2A 2BR8A 5AFLA 3PMZA 2YKSA 3TLVA 5J5HA 3WTKA 4QABA 4IL9A 3U8JA 3WTNA 3RIFA 4UM3S 3EHZA 5L4EA 2XZ5A 3UUBA 3UU4A 4AFGA 3IGQA 5KE4A 4TWHA 2Y7YA 4UXUA 2W8FA 2WN9A 4LMJA 4TNVA 5J5IA 3SIOA 3ZDHA 2XQ4A 3UU3A 5IUXA 3ZKRA 2VL0A 4ZZBA 2XQ3A 2XYSA 3T4MA 2PGZA 3TLTA 5FJVA 2XNVA 4ZR6A 3UQ7A 4DBMA 2BYSA 4ZJTA 5BRXA 2BYRA 2XZ6A 4TNWA 3UQ4A 3SQ9A 2BYQA 4F8HA 2BR7A 5L4HA 4PIRA 4ALXA 3RQWA 3TLWA 4HFHA 4ILCA 3SQ6A 4ZK1A 4COFA 4HQPA 5BP0A 2WNLA 2BG9B 2WZYA 3WTMA 3WIPA 5J5GA 2Y54A 4A97A 5AFHA 3P50A 3P4WA 4TWDA 2XQ8A 3EI0A 3WTHA 1I9BA 4HFBA 2C9TA 4BQTA 3LSVA 3C79A 2W8GA 4QH5A 2YMDA 4ILAA 2XNTA 4LMLA 4QH1A 1UW6A 2Y58A 3RI5A 2X00A 2YMEA 3WTIA 2XQAA 2YOEA 5AFMB 2BJ0A 3U8MA 2X00D 3WTLA 4ZK4A 2XQ5A 3U8KA 4BFQA 4ZZCA 2Y57A 5J0ZA 2BG9A 2Y56A 2XNUA 4XK9A 5KZUA 5L47A 5LXBA 3U8NA 4ILBA 3EAMA 4X5TA 4NZBA 2PH9A 3TLSA 5TVCA 2QC1B 5SYOA 3WTJA 4LMKA 4UM1A 2YN6A 4AFHA 5J5FA 4ZJSA 4Z90A 4A98A 3GUAA 1UV6A 5HEOA 2BYNA 3TLUA 2WNCA 5HCJA 2BYPA 4D01A 2XQ6A 3UU6A 2BG9E 4HFEA 5AFMA 5CO5A 3WTOA 4B5DA 4UM3A 2XQ7A 4UY2A 5AINA 4IREA 4QH4A 3JADA 5JMEA 4HFCA 3JAFA 4NPPA 2WNJA 4HFIA 5HEGA 3RHWA 2BG9C 3JAEA 5LG3A 4ZRUA 3RIAA 4AFTA 5HEUA 4QACA 5HEHA 5HEJA 2UZ6A 4QAAA 1UX2A 4XHEA 5AFJA 3C84A 3PEOA 4WV9A 4UM3P 3UU8A 5CFBA 4EZ1A 4FRRA 3SH1A 4TWFA 3UU5A 2XYTA 4Z91A 4IL4A 4HFDA 2ZJUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HCM A;  2ZJV A;  5AFN A;  3RQU A;  2XQ9 A;  5AFK A;  3ZDG A;  3U8L A;  5BW2 A;  2BR8 A;  5AFL A;  3PMZ A;  2YKS A;  3TLV A;  5J5H A;  3WTK A;  4QAB A;  4IL9 A;  3U8J A;  3WTN A;  3RIF A;  4UM3 S;  3EHZ A;  5L4E A;  2XZ5 A;  3UUB A;  3UU4 A;  4AFG A;  3IGQ A;  5KE4 A;  4TWH A;  2Y7Y A;  4UXU A;  2W8F A;  2WN9 A;  4LMJ A;  4TNV A;  5J5I A;  3SIO A;  3ZDH A;  2XQ4 A;  3UU3 A;  5IUX A;  3ZKR A;  2VL0 A;  4ZZB A;  2XQ3 A;  2XYS A;  3T4M A;  2PGZ A;  3TLT A;  5FJV A;  2XNV A;  4ZR6 A;  3UQ7 A;  4DBM A;  2BYS A;  4ZJT A;  5BRX A;  2BYR A;  2XZ6 A;  4TNW A;  3UQ4 A;  3SQ9 A;  2BYQ A;  4F8H A;  2BR7 A;  5L4H A;  4PIR A;  4ALX A;  3RQW A;  3TLW A;  4HFH A;  4ILC A;  3SQ6 A;  4ZK1 A;  4COF A;  4HQP A;  5BP0 A;  2WNL A;  2BG9 B;  2WZY A;  3WTM A;  3WIP A;  5J5G A;  2Y54 A;  4A97 A;  5AFH A;  3P50 A;  3P4W A;  4TWD A;  2XQ8 A;  3EI0 A;  3WTH A;  1I9B A;  4HFB A;  2C9T A;  4BQT A;  3LSV A;  3C79 A;  2W8G A;  4QH5 A;  2YMD A;  4ILA A;  2XNT A;  4LML A;  4QH1 A;  1UW6 A;  2Y58 A;  3RI5 A;  2X00 A;  2YME A;  3WTI A;  2XQA A;  2YOE A;  5AFM B;  2BJ0 A;  3U8M A;  2X00 D;  3WTL A;  4ZK4 A;  2XQ5 A;  3U8K A;  4BFQ A;  4ZZC A;  2Y57 A;  5J0Z A;  2BG9 A;  2Y56 A;  2XNU A;  4XK9 A;  5KZU A;  5L47 A;  5LXB A;  3U8N A;  4ILB A;  3EAM A;  4X5T A;  4NZB A;  2PH9 A;  3TLS A;  5TVC A;  2QC1 B;  5SYO A;  3WTJ A;  4LMK A;  4UM1 A;  2YN6 A;  4AFH A;  5J5F A;  4ZJS A;  4Z90 A;  4A98 A;  3GUA A;  1UV6 A;  5HEO A;  2BYN A;  3TLU A;  2WNC A;  5HCJ A;  2BYP A;  4D01 A;  2XQ6 A;  3UU6 A;  2BG9 E;  4HFE A;  5AFM A;  5CO5 A;  3WTO A;  4B5D A;  4UM3 A;  2XQ7 A;  4UY2 A;  5AIN A;  4IRE A;  4QH4 A;  3JAD A;  5JME A;  4HFC A;  3JAF A;  4NPP A;  2WNJ A;  4HFI A;  5HEG A;  3RHW A;  2BG9 C;  3JAE A;  5LG3 A;  4ZRU A;  3RIA A;  4AFT A;  5HEU A;  4QAC A;  5HEH A;  5HEJ A;  2UZ6 A;  4QAA A;  1UX2 A;  4XHE A;  5AFJ A;  3C84 A;  3PEO A;  4WV9 A;  4UM3 P;  3UU8 A;  5CFB A;  4EZ1 A;  4FRR A;  3SH1 A;  4TWF A;  3UU5 A;  2XYT A;  4Z91 A;  4IL4 A;  4HFD A;  2ZJU A; 
#chains in the Genus database with same CATH topology
 5HCM A;  2ZJV A;  5AFN A;  3RQU A;  2XQ9 A;  5AFK A;  3ZDG A;  3U8L A;  5BW2 A;  2BR8 A;  5AFL A;  3PMZ A;  2YKS A;  3TLV A;  5J5H A;  3WTK A;  4QAB A;  4IL9 A;  3U8J A;  3WTN A;  3RIF A;  4UM3 S;  3EHZ A;  5L4E A;  2XZ5 A;  3UUB A;  3UU4 A;  4AFG A;  3IGQ A;  5KE4 A;  4TWH A;  2Y7Y A;  4UXU A;  2W8F A;  2WN9 A;  4LMJ A;  4TNV A;  5J5I A;  3SIO A;  3ZDH A;  2XQ4 A;  3UU3 A;  5IUX A;  3ZKR A;  2VL0 A;  4ZZB A;  2XQ3 A;  2XYS A;  3T4M A;  2PGZ A;  3TLT A;  5FJV A;  2XNV A;  4ZR6 A;  3UQ7 A;  4DBM A;  2BYS A;  4ZJT A;  5BRX A;  2BYR A;  2XZ6 A;  4TNW A;  3UQ4 A;  3SQ9 A;  2BYQ A;  4F8H A;  2BR7 A;  5L4H A;  4PIR A;  4ALX A;  3RQW A;  3TLW A;  4HFH A;  4ILC A;  3SQ6 A;  4ZK1 A;  4COF A;  4HQP A;  5BP0 A;  2WNL A;  2BG9 B;  2WZY A;  3WTM A;  3WIP A;  5J5G A;  2Y54 A;  4A97 A;  5AFH A;  3P50 A;  3P4W A;  4TWD A;  2XQ8 A;  3EI0 A;  3WTH A;  1I9B A;  4HFB A;  2C9T A;  4BQT A;  3LSV A;  3C79 A;  2W8G A;  4QH5 A;  2YMD A;  4ILA A;  2XNT A;  4LML A;  4QH1 A;  1UW6 A;  2Y58 A;  3RI5 A;  2X00 A;  2YME A;  3WTI A;  2XQA A;  2YOE A;  5AFM B;  2BJ0 A;  3U8M A;  2X00 D;  3WTL A;  4ZK4 A;  2XQ5 A;  3U8K A;  4BFQ A;  4ZZC A;  2Y57 A;  5J0Z A;  2BG9 A;  2Y56 A;  2XNU A;  4XK9 A;  5KZU A;  5L47 A;  5LXB A;  3U8N A;  4ILB A;  3EAM A;  4X5T A;  4NZB A;  2PH9 A;  3TLS A;  5TVC A;  2QC1 B;  5SYO A;  3WTJ A;  4LMK A;  4UM1 A;  2YN6 A;  4AFH A;  5J5F A;  4ZJS A;  4Z90 A;  4A98 A;  3GUA A;  1UV6 A;  5HEO A;  2BYN A;  3TLU A;  2WNC A;  5HCJ A;  2BYP A;  4D01 A;  2XQ6 A;  3UU6 A;  2BG9 E;  4HFE A;  5AFM A;  5CO5 A;  3WTO A;  4B5D A;  4UM3 A;  2XQ7 A;  4UY2 A;  5AIN A;  4IRE A;  4QH4 A;  3JAD A;  5JME A;  4HFC A;  3JAF A;  4NPP A;  2WNJ A;  4HFI A;  5HEG A;  3RHW A;  2BG9 C;  3JAE A;  5LG3 A;  4ZRU A;  3RIA A;  4AFT A;  5HEU A;  4QAC A;  5HEH A;  5HEJ A;  2UZ6 A;  4QAA A;  1UX2 A;  4XHE A;  5AFJ A;  3C84 A;  3PEO A;  4WV9 A;  4UM3 P;  3UU8 A;  5CFB A;  4EZ1 A;  4FRR A;  3SH1 A;  4TWF A;  3UU5 A;  2XYT A;  4Z91 A;  4IL4 A;  4HFD A;  2ZJU A; 
#chains in the Genus database with same CATH homology
 5HCM A;  2ZJV A;  5AFN A;  3RQU A;  2XQ9 A;  5AFK A;  3ZDG A;  3U8L A;  5BW2 A;  2BR8 A;  5AFL A;  3PMZ A;  2YKS A;  3TLV A;  5J5H A;  3WTK A;  4QAB A;  4IL9 A;  3U8J A;  3WTN A;  3RIF A;  4UM3 S;  3EHZ A;  5L4E A;  2XZ5 A;  3UUB A;  3UU4 A;  4AFG A;  3IGQ A;  5KE4 A;  4TWH A;  2Y7Y A;  4UXU A;  2W8F A;  2WN9 A;  4LMJ A;  4TNV A;  5J5I A;  3SIO A;  3ZDH A;  2XQ4 A;  3UU3 A;  5IUX A;  3ZKR A;  2VL0 A;  4ZZB A;  2XQ3 A;  2XYS A;  3T4M A;  2PGZ A;  3TLT A;  5FJV A;  2XNV A;  4ZR6 A;  3UQ7 A;  4DBM A;  2BYS A;  4ZJT A;  5BRX A;  2BYR A;  2XZ6 A;  4TNW A;  3UQ4 A;  3SQ9 A;  2BYQ A;  4F8H A;  2BR7 A;  5L4H A;  4PIR A;  4ALX A;  3RQW A;  3TLW A;  4HFH A;  4ILC A;  3SQ6 A;  4ZK1 A;  4COF A;  4HQP A;  5BP0 A;  2WNL A;  2BG9 B;  2WZY A;  3WTM A;  3WIP A;  5J5G A;  2Y54 A;  4A97 A;  5AFH A;  3P50 A;  3P4W A;  4TWD A;  2XQ8 A;  3EI0 A;  3WTH A;  1I9B A;  4HFB A;  2C9T A;  4BQT A;  3LSV A;  3C79 A;  2W8G A;  4QH5 A;  2YMD A;  4ILA A;  2XNT A;  4LML A;  4QH1 A;  1UW6 A;  2Y58 A;  3RI5 A;  2X00 A;  2YME A;  3WTI A;  2XQA A;  2YOE A;  5AFM B;  2BJ0 A;  3U8M A;  2X00 D;  3WTL A;  4ZK4 A;  2XQ5 A;  3U8K A;  4BFQ A;  4ZZC A;  2Y57 A;  5J0Z A;  2BG9 A;  2Y56 A;  2XNU A;  4XK9 A;  5KZU A;  5L47 A;  5LXB A;  3U8N A;  4ILB A;  3EAM A;  4X5T A;  4NZB A;  2PH9 A;  3TLS A;  5TVC A;  2QC1 B;  5SYO A;  3WTJ A;  4LMK A;  4UM1 A;  2YN6 A;  4AFH A;  5J5F A;  4ZJS A;  4Z90 A;  4A98 A;  3GUA A;  1UV6 A;  5HEO A;  2BYN A;  3TLU A;  2WNC A;  5HCJ A;  2BYP A;  4D01 A;  2XQ6 A;  3UU6 A;  2BG9 E;  4HFE A;  5AFM A;  5CO5 A;  3WTO A;  4B5D A;  4UM3 A;  2XQ7 A;  4UY2 A;  5AIN A;  4IRE A;  4QH4 A;  3JAD A;  5JME A;  4HFC A;  3JAF A;  4NPP A;  2WNJ A;  4HFI A;  5HEG A;  3RHW A;  2BG9 C;  3JAE A;  5LG3 A;  4ZRU A;  3RIA A;  4AFT A;  5HEU A;  4QAC A;  5HEH A;  5HEJ A;  2UZ6 A;  4QAA A;  1UX2 A;  4XHE A;  5AFJ A;  3C84 A;  3PEO A;  4WV9 A;  4UM3 P;  3UU8 A;  5CFB A;  4EZ1 A;  4FRR A;  3SH1 A;  4TWF A;  3UU5 A;  2XYT A;  4Z91 A;  4IL4 A;  4HFD A;  2ZJU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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