5BW2A

X-ray crystal structure of aplysia californica acetylcholine binding protein (ac-achbp) y55w in complex with 2-pyridin-3-yl-1-aza-bicyclo[2.2.2]octane; 2-(3-pyridyl)quinuclidine; 2-pq (ti-4699)
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
212
structure length
211
Chain Sequence
DKLHSQANLMRLKSDLFNRSMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Comparisons of Binding Affinities for Neuronal Nicotinic Receptors (NNRs) and AChBPs
rcsb
molecule keywords Soluble acetylcholine receptor
source organism Aplysia californica
molecule tags Acetylcholine binding protein
total genus 52
structure length 211
sequence length 212
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5bw2A00
4Z91A 2BG9B 3JAEA 2XNTA 4B5DA 3JADA 3TLWA 3U8LA 4UM1A 4Z90A 3IGQA 2BYRA 5AFKA 4ILAA 4QH5A 2BJ0A 4TWDA 5AINA 4HFDA 2W8FA 2Y7YA 5AFMB 5LXBA 4X5TA 2C9TA 2W8GA 4ZRUA 5L4HA 5L47A 2XZ6A 5CFBA 2X00D 4ZK4A 3WTNA 3WIPA 3WTHA 4A97A 2YOEA 5AFNA 5KE4A 2WNCA 3WTLA 4TNWA 2BYQA 3P50A 2XQ8A 3RIFA 3WTKA 4PIRA 2VL0A 2Y58A 5HEGA 3P4WA 3GUAA 4FRRA 5SYOA 4F8HA 4ZR6A 3UU4A 3JAFA 3RI5A 2BG9A 3TLSA 5J5FA 4BQTA 4AFHA 4AFGA 5AFHA 3WTOA 3U8NA 3RQWA 2ZJVA 2XYTA 3U8JA 4ILBA 2XQ6A 3UU8A 4ZJTA 3ZKRA 4IL9A 4XHEA 3U8MA 5J5HA 5HCJA 2BR7A 4HFEA 3EI0A 3ZDGA 5BW2A 3UU3A 2BG9C 2WNJA 4ZJSA 4QABA 2YMDA 2BYPA 3RQUA 3TLVA 4QH4A 4UXUA 4D01A 4LMKA 4WV9A 3T4MA 2Y56A 5HCMA 2YMEA 3EAMA 1I9BA 4TWHA 3LSVA 3WTMA 4ILCA 4TNVA 5HEUA 4UM3S 2BYNA 4ALXA 5CO5A 4NPPA 2WNLA 5HEOA 5L4EA 5TVCA 2YKSA 5J5IA 2YN6A 4UM3A 4QH1A 2XQ4A 3WTJA 2XQAA 4TWFA 3SH1A 3TLTA 3ZDHA 5IUXA 4HQPA 3PMZA 2BR8A 2UZ6A 5AFMA 3UQ7A 3SQ6A 4ZZCA 3UUBA 2ZJUA 2XQ9A 4QACA 4EZ1A 5BP0A 3WTIA 5LG3A 4HFBA 2XNUA 3RHWA 3UQ4A 2PH9A 2XQ5A 4AFTA 4IREA 4HFHA 4NZBA 4XK9A 1UX2A 2XQ7A 3PEOA 4HFCA 3TLUA 4ZZBA 3U8KA 2X00A 5FJVA 4UY2A 4A98A 2Y57A 2PGZA 3SQ9A 2XZ5A 4COFA 1UV6A 2XQ3A 5KZUA 5J0ZA 3UU5A 4LMLA 2Y54A 2QC1B 4BFQA 2WN9A 5J5GA 5HEHA 2BG9E 2WZYA 3EHZA 4DBMA 5AFJA 3SIOA 2XYSA 5HEJA 3UU6A 3C79A 4UM3P 2XNVA 4HFIA 3C84A 3RIAA 5AFLA 4QAAA 4LMJA 1UW6A 4IL4A 5BRXA 5JMEA 2BYSA 4ZK1A
chains in the Genus database with same CATH superfamily
4Z91A 2BG9B 3JAEA 2XNTA 4B5DA 3JADA 3TLWA 3U8LA 4UM1A 4Z90A 3IGQA 2BYRA 5AFKA 4ILAA 4QH5A 2BJ0A 4TWDA 5AINA 4HFDA 2W8FA 2Y7YA 5AFMB 5LXBA 4X5TA 2C9TA 2W8GA 4ZRUA 5L4HA 5L47A 2XZ6A 5CFBA 2X00D 4ZK4A 3WTNA 3WIPA 3WTHA 4A97A 2YOEA 5AFNA 5KE4A 2WNCA 3WTLA 4TNWA 2BYQA 3P50A 2XQ8A 3RIFA 3WTKA 4PIRA 2VL0A 2Y58A 5HEGA 3P4WA 3GUAA 4FRRA 5SYOA 4F8HA 4ZR6A 3UU4A 3JAFA 3RI5A 2BG9A 3TLSA 5J5FA 4BQTA 4AFHA 4AFGA 5AFHA 3WTOA 3U8NA 3RQWA 2ZJVA 2XYTA 3U8JA 4ILBA 2XQ6A 3UU8A 4ZJTA 3ZKRA 4IL9A 4XHEA 3U8MA 5J5HA 5HCJA 2BR7A 4HFEA 3EI0A 3ZDGA 5BW2A 3UU3A 2BG9C 2WNJA 4ZJSA 4QABA 2YMDA 2BYPA 3RQUA 3TLVA 4QH4A 4UXUA 4D01A 4LMKA 4WV9A 3T4MA 2Y56A 5HCMA 2YMEA 3EAMA 1I9BA 4TWHA 3LSVA 3WTMA 4ILCA 4TNVA 5HEUA 4UM3S 2BYNA 4ALXA 5CO5A 4NPPA 2WNLA 5HEOA 5L4EA 5TVCA 2YKSA 5J5IA 2YN6A 4UM3A 4QH1A 2XQ4A 3WTJA 2XQAA 4TWFA 3SH1A 3TLTA 3ZDHA 5IUXA 4HQPA 3PMZA 2BR8A 2UZ6A 5AFMA 3UQ7A 3SQ6A 4ZZCA 3UUBA 2ZJUA 2XQ9A 4QACA 4EZ1A 5BP0A 3WTIA 5LG3A 4HFBA 2XNUA 3RHWA 3UQ4A 2PH9A 2XQ5A 4AFTA 4IREA 4HFHA 4NZBA 4XK9A 1UX2A 2XQ7A 3PEOA 4HFCA 3TLUA 4ZZBA 3U8KA 2X00A 5FJVA 4UY2A 4A98A 2Y57A 2PGZA 3SQ9A 2XZ5A 4COFA 1UV6A 2XQ3A 5KZUA 5J0ZA 3UU5A 4LMLA 2Y54A 2QC1B 4BFQA 2WN9A 5J5GA 5HEHA 2BG9E 2WZYA 3EHZA 4DBMA 5AFJA 3SIOA 2XYSA 5HEJA 3UU6A 3C79A 4UM3P 2XNVA 4HFIA 3C84A 3RIAA 5AFLA 4QAAA 4LMJA 1UW6A 4IL4A 5BRXA 5JMEA 2BYSA 4ZK1A
chains in the Genus database with same CATH topology
4Z91A 2BG9B 3JAEA 2XNTA 4B5DA 3JADA 3TLWA 3U8LA 4UM1A 4Z90A 3IGQA 2BYRA 5AFKA 4ILAA 4QH5A 2BJ0A 4TWDA 5AINA 4HFDA 2W8FA 2Y7YA 5AFMB 5LXBA 4X5TA 2C9TA 2W8GA 4ZRUA 5L4HA 5L47A 2XZ6A 5CFBA 2X00D 4ZK4A 3WTNA 3WIPA 3WTHA 4A97A 2YOEA 5AFNA 5KE4A 2WNCA 3WTLA 4TNWA 2BYQA 3P50A 2XQ8A 3RIFA 3WTKA 4PIRA 2VL0A 2Y58A 5HEGA 3P4WA 3GUAA 4FRRA 5SYOA 4F8HA 4ZR6A 3UU4A 3JAFA 3RI5A 2BG9A 3TLSA 5J5FA 4BQTA 4AFHA 4AFGA 5AFHA 3WTOA 3U8NA 3RQWA 2ZJVA 2XYTA 3U8JA 4ILBA 2XQ6A 3UU8A 4ZJTA 3ZKRA 4IL9A 4XHEA 3U8MA 5J5HA 5HCJA 2BR7A 4HFEA 3EI0A 3ZDGA 5BW2A 3UU3A 2BG9C 2WNJA 4ZJSA 4QABA 2YMDA 2BYPA 3RQUA 3TLVA 4QH4A 4UXUA 4D01A 4LMKA 4WV9A 3T4MA 2Y56A 5HCMA 2YMEA 3EAMA 1I9BA 4TWHA 3LSVA 3WTMA 4ILCA 4TNVA 5HEUA 4UM3S 2BYNA 4ALXA 5CO5A 4NPPA 2WNLA 5HEOA 5L4EA 5TVCA 2YKSA 5J5IA 2YN6A 4UM3A 4QH1A 2XQ4A 3WTJA 2XQAA 4TWFA 3SH1A 3TLTA 3ZDHA 5IUXA 4HQPA 3PMZA 2BR8A 2UZ6A 5AFMA 3UQ7A 3SQ6A 4ZZCA 3UUBA 2ZJUA 2XQ9A 4QACA 4EZ1A 5BP0A 3WTIA 5LG3A 4HFBA 2XNUA 3RHWA 3UQ4A 2PH9A 2XQ5A 4AFTA 4IREA 4HFHA 4NZBA 4XK9A 1UX2A 2XQ7A 3PEOA 4HFCA 3TLUA 4ZZBA 3U8KA 2X00A 5FJVA 4UY2A 4A98A 2Y57A 2PGZA 3SQ9A 2XZ5A 4COFA 1UV6A 2XQ3A 5KZUA 5J0ZA 3UU5A 4LMLA 2Y54A 2QC1B 4BFQA 2WN9A 5J5GA 5HEHA 2BG9E 2WZYA 3EHZA 4DBMA 5AFJA 3SIOA 2XYSA 5HEJA 3UU6A 3C79A 4UM3P 2XNVA 4HFIA 3C84A 3RIAA 5AFLA 4QAAA 4LMJA 1UW6A 4IL4A 5BRXA 5JMEA 2BYSA 4ZK1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z91 A;  2BG9 B;  3JAE A;  2XNT A;  4B5D A;  3JAD A;  3TLW A;  3U8L A;  4UM1 A;  4Z90 A;  3IGQ A;  2BYR A;  5AFK A;  4ILA A;  4QH5 A;  2BJ0 A;  4TWD A;  5AIN A;  4HFD A;  2W8F A;  2Y7Y A;  5AFM B;  5LXB A;  4X5T A;  2C9T A;  2W8G A;  4ZRU A;  5L4H A;  5L47 A;  2XZ6 A;  5CFB A;  2X00 D;  4ZK4 A;  3WTN A;  3WIP A;  3WTH A;  4A97 A;  2YOE A;  5AFN A;  5KE4 A;  2WNC A;  3WTL A;  4TNW A;  2BYQ A;  3P50 A;  2XQ8 A;  3RIF A;  3WTK A;  4PIR A;  2VL0 A;  2Y58 A;  5HEG A;  3P4W A;  3GUA A;  4FRR A;  5SYO A;  4F8H A;  4ZR6 A;  3UU4 A;  3JAF A;  3RI5 A;  2BG9 A;  3TLS A;  5J5F A;  4BQT A;  4AFH A;  4AFG A;  5AFH A;  3WTO A;  3U8N A;  3RQW A;  2ZJV A;  2XYT A;  3U8J A;  4ILB A;  2XQ6 A;  3UU8 A;  4ZJT A;  3ZKR A;  4IL9 A;  4XHE A;  3U8M A;  5J5H A;  5HCJ A;  2BR7 A;  4HFE A;  3EI0 A;  3ZDG A;  5BW2 A;  3UU3 A;  2BG9 C;  2WNJ A;  4ZJS A;  4QAB A;  2YMD A;  2BYP A;  3RQU A;  3TLV A;  4QH4 A;  4UXU A;  4D01 A;  4LMK A;  4WV9 A;  3T4M A;  2Y56 A;  5HCM A;  2YME A;  3EAM A;  1I9B A;  4TWH A;  3LSV A;  3WTM A;  4ILC A;  4TNV A;  5HEU A;  4UM3 S;  2BYN A;  4ALX A;  5CO5 A;  4NPP A;  2WNL A;  5HEO A;  5L4E A;  5TVC A;  2YKS A;  5J5I A;  2YN6 A;  4UM3 A;  4QH1 A;  2XQ4 A;  3WTJ A;  2XQA A;  4TWF A;  3SH1 A;  3TLT A;  3ZDH A;  5IUX A;  4HQP A;  3PMZ A;  2BR8 A;  2UZ6 A;  5AFM A;  3UQ7 A;  3SQ6 A;  4ZZC A;  3UUB A;  2ZJU A;  2XQ9 A;  4QAC A;  4EZ1 A;  5BP0 A;  3WTI A;  5LG3 A;  4HFB A;  2XNU A;  3RHW A;  3UQ4 A;  2PH9 A;  2XQ5 A;  4AFT A;  4IRE A;  4HFH A;  4NZB A;  4XK9 A;  1UX2 A;  2XQ7 A;  3PEO A;  4HFC A;  3TLU A;  4ZZB A;  3U8K A;  2X00 A;  5FJV A;  4UY2 A;  4A98 A;  2Y57 A;  2PGZ A;  3SQ9 A;  2XZ5 A;  4COF A;  1UV6 A;  2XQ3 A;  5KZU A;  5J0Z A;  3UU5 A;  4LML A;  2Y54 A;  2QC1 B;  4BFQ A;  2WN9 A;  5J5G A;  5HEH A;  2BG9 E;  2WZY A;  3EHZ A;  4DBM A;  5AFJ A;  3SIO A;  2XYS A;  5HEJ A;  3UU6 A;  3C79 A;  4UM3 P;  2XNV A;  4HFI A;  3C84 A;  3RIA A;  5AFL A;  4QAA A;  4LMJ A;  1UW6 A;  4IL4 A;  5BRX A;  5JME A;  2BYS A;  4ZK1 A; 
#chains in the Genus database with same CATH topology
 4Z91 A;  2BG9 B;  3JAE A;  2XNT A;  4B5D A;  3JAD A;  3TLW A;  3U8L A;  4UM1 A;  4Z90 A;  3IGQ A;  2BYR A;  5AFK A;  4ILA A;  4QH5 A;  2BJ0 A;  4TWD A;  5AIN A;  4HFD A;  2W8F A;  2Y7Y A;  5AFM B;  5LXB A;  4X5T A;  2C9T A;  2W8G A;  4ZRU A;  5L4H A;  5L47 A;  2XZ6 A;  5CFB A;  2X00 D;  4ZK4 A;  3WTN A;  3WIP A;  3WTH A;  4A97 A;  2YOE A;  5AFN A;  5KE4 A;  2WNC A;  3WTL A;  4TNW A;  2BYQ A;  3P50 A;  2XQ8 A;  3RIF A;  3WTK A;  4PIR A;  2VL0 A;  2Y58 A;  5HEG A;  3P4W A;  3GUA A;  4FRR A;  5SYO A;  4F8H A;  4ZR6 A;  3UU4 A;  3JAF A;  3RI5 A;  2BG9 A;  3TLS A;  5J5F A;  4BQT A;  4AFH A;  4AFG A;  5AFH A;  3WTO A;  3U8N A;  3RQW A;  2ZJV A;  2XYT A;  3U8J A;  4ILB A;  2XQ6 A;  3UU8 A;  4ZJT A;  3ZKR A;  4IL9 A;  4XHE A;  3U8M A;  5J5H A;  5HCJ A;  2BR7 A;  4HFE A;  3EI0 A;  3ZDG A;  5BW2 A;  3UU3 A;  2BG9 C;  2WNJ A;  4ZJS A;  4QAB A;  2YMD A;  2BYP A;  3RQU A;  3TLV A;  4QH4 A;  4UXU A;  4D01 A;  4LMK A;  4WV9 A;  3T4M A;  2Y56 A;  5HCM A;  2YME A;  3EAM A;  1I9B A;  4TWH A;  3LSV A;  3WTM A;  4ILC A;  4TNV A;  5HEU A;  4UM3 S;  2BYN A;  4ALX A;  5CO5 A;  4NPP A;  2WNL A;  5HEO A;  5L4E A;  5TVC A;  2YKS A;  5J5I A;  2YN6 A;  4UM3 A;  4QH1 A;  2XQ4 A;  3WTJ A;  2XQA A;  4TWF A;  3SH1 A;  3TLT A;  3ZDH A;  5IUX A;  4HQP A;  3PMZ A;  2BR8 A;  2UZ6 A;  5AFM A;  3UQ7 A;  3SQ6 A;  4ZZC A;  3UUB A;  2ZJU A;  2XQ9 A;  4QAC A;  4EZ1 A;  5BP0 A;  3WTI A;  5LG3 A;  4HFB A;  2XNU A;  3RHW A;  3UQ4 A;  2PH9 A;  2XQ5 A;  4AFT A;  4IRE A;  4HFH A;  4NZB A;  4XK9 A;  1UX2 A;  2XQ7 A;  3PEO A;  4HFC A;  3TLU A;  4ZZB A;  3U8K A;  2X00 A;  5FJV A;  4UY2 A;  4A98 A;  2Y57 A;  2PGZ A;  3SQ9 A;  2XZ5 A;  4COF A;  1UV6 A;  2XQ3 A;  5KZU A;  5J0Z A;  3UU5 A;  4LML A;  2Y54 A;  2QC1 B;  4BFQ A;  2WN9 A;  5J5G A;  5HEH A;  2BG9 E;  2WZY A;  3EHZ A;  4DBM A;  5AFJ A;  3SIO A;  2XYS A;  5HEJ A;  3UU6 A;  3C79 A;  4UM3 P;  2XNV A;  4HFI A;  3C84 A;  3RIA A;  5AFL A;  4QAA A;  4LMJ A;  1UW6 A;  4IL4 A;  5BRX A;  5JME A;  2BYS A;  4ZK1 A; 
#chains in the Genus database with same CATH homology
 4Z91 A;  2BG9 B;  3JAE A;  2XNT A;  4B5D A;  3JAD A;  3TLW A;  3U8L A;  4UM1 A;  4Z90 A;  3IGQ A;  2BYR A;  5AFK A;  4ILA A;  4QH5 A;  2BJ0 A;  4TWD A;  5AIN A;  4HFD A;  2W8F A;  2Y7Y A;  5AFM B;  5LXB A;  4X5T A;  2C9T A;  2W8G A;  4ZRU A;  5L4H A;  5L47 A;  2XZ6 A;  5CFB A;  2X00 D;  4ZK4 A;  3WTN A;  3WIP A;  3WTH A;  4A97 A;  2YOE A;  5AFN A;  5KE4 A;  2WNC A;  3WTL A;  4TNW A;  2BYQ A;  3P50 A;  2XQ8 A;  3RIF A;  3WTK A;  4PIR A;  2VL0 A;  2Y58 A;  5HEG A;  3P4W A;  3GUA A;  4FRR A;  5SYO A;  4F8H A;  4ZR6 A;  3UU4 A;  3JAF A;  3RI5 A;  2BG9 A;  3TLS A;  5J5F A;  4BQT A;  4AFH A;  4AFG A;  5AFH A;  3WTO A;  3U8N A;  3RQW A;  2ZJV A;  2XYT A;  3U8J A;  4ILB A;  2XQ6 A;  3UU8 A;  4ZJT A;  3ZKR A;  4IL9 A;  4XHE A;  3U8M A;  5J5H A;  5HCJ A;  2BR7 A;  4HFE A;  3EI0 A;  3ZDG A;  5BW2 A;  3UU3 A;  2BG9 C;  2WNJ A;  4ZJS A;  4QAB A;  2YMD A;  2BYP A;  3RQU A;  3TLV A;  4QH4 A;  4UXU A;  4D01 A;  4LMK A;  4WV9 A;  3T4M A;  2Y56 A;  5HCM A;  2YME A;  3EAM A;  1I9B A;  4TWH A;  3LSV A;  3WTM A;  4ILC A;  4TNV A;  5HEU A;  4UM3 S;  2BYN A;  4ALX A;  5CO5 A;  4NPP A;  2WNL A;  5HEO A;  5L4E A;  5TVC A;  2YKS A;  5J5I A;  2YN6 A;  4UM3 A;  4QH1 A;  2XQ4 A;  3WTJ A;  2XQA A;  4TWF A;  3SH1 A;  3TLT A;  3ZDH A;  5IUX A;  4HQP A;  3PMZ A;  2BR8 A;  2UZ6 A;  5AFM A;  3UQ7 A;  3SQ6 A;  4ZZC A;  3UUB A;  2ZJU A;  2XQ9 A;  4QAC A;  4EZ1 A;  5BP0 A;  3WTI A;  5LG3 A;  4HFB A;  2XNU A;  3RHW A;  3UQ4 A;  2PH9 A;  2XQ5 A;  4AFT A;  4IRE A;  4HFH A;  4NZB A;  4XK9 A;  1UX2 A;  2XQ7 A;  3PEO A;  4HFC A;  3TLU A;  4ZZB A;  3U8K A;  2X00 A;  5FJV A;  4UY2 A;  4A98 A;  2Y57 A;  2PGZ A;  3SQ9 A;  2XZ5 A;  4COF A;  1UV6 A;  2XQ3 A;  5KZU A;  5J0Z A;  3UU5 A;  4LML A;  2Y54 A;  2QC1 B;  4BFQ A;  2WN9 A;  5J5G A;  5HEH A;  2BG9 E;  2WZY A;  3EHZ A;  4DBM A;  5AFJ A;  3SIO A;  2XYS A;  5HEJ A;  3UU6 A;  3C79 A;  4UM3 P;  2XNV A;  4HFI A;  3C84 A;  3RIA A;  5AFL A;  4QAA A;  4LMJ A;  1UW6 A;  4IL4 A;  5BRX A;  5JME A;  2BYS A;  4ZK1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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