5C0PA

The crystal structure of endo-arabinase from bacteroides thetaiotaomicron vpi-5482
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
284
structure length
284
Chain Sequence
ESFTIPVSSLRLRDPFILVDKKTSMYYLHFNNNLKIRVYKSKDLSTWKDEGYSFIAKSDFWGQQDFWAPDVYEYEGRYYLFTTFSNAGVKRGTSILVSDSPKGPFTPLVNKAITPSGWMCLDGSLYIDKEGNPWLLFCREWLETIDGEIYAQRLAKDLKTTEGDPYLLFKASEAPWVGSITSSGVTGNVTDAPFIYRLDDGKLIMLWSSFRKTDGKYAIGQAVSASGNVLGPWVQEPETLNSDDGGHAMVFKDLKGRLMISYHAPNSQTEHPVITPIYIKDGKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Bacteroides thetaiotaomicron (strain atcc 29148 / dsm 2079 / nctc 10582 / e50 /
publication title The crystal structure of endo-arabinase from Bacteroides thetaiotaomicron VPI-5482
rcsb
molecule keywords Endo-arabinase
total genus 69
structure length 284
sequence length 284
ec nomenclature
pdb deposition date 2015-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5c0pA00
2VDTA 5GLPA 3BYKA 3KSTA 5GLNA 3VT1A 3U75A 3LIGA 2AC1A 3BYLA 5A7VA 4PVAA 4UDJA 4UDGA 3D5ZA 3R67A 5FMDA 4AK7A 2QQUA 5AYDA 3WPVA 1Y9MA 3LFIA 4ONZA 5B6TA 5AYEA 3WATA 5GLOA 3BYNA 4KC7A 2ADEA 3OM7A 3D61A 3PIGA 3CU9A 2YFSA 3P2NA 4N4BA 4KC8A 4UDKE 3AKIA 2AEYA 1YRZA 1Y7BA 3QEEA 1UYPA 3AKFA 2X8FA 2AEZA 4UDIA 4N1IA 2EXKA 3VSZA 3WASA 3WPUA 3R4YA 4O8NA 3VT2A 5A8CA 1Y4WA 5FMBA 5FK8A 3K1UA 3C7OA 3WN1A 4AK6A 5JOZA 1GYHA 5AYCA 1Y9GA 1GYEB 3D60A 5JOWA 3OM2A 4AK5A 3OM5A 5JOYA 2ADDA 5FK7A 5A7VB 3RWKX 1GYDB 3LIHA 3QEFA 4QQSA 2EXIA 3LEMA 3U14A 1W18A 5A8DA 2YFTA 4KCAA 1YIFA 3NQHA 3C7FA 4FFFA 1OYGA 3QC2A 3VSSA 3R4ZA 3C2UA 2X8TA 4KMIA 4D47A 5JOXA 3PIJA 3C7EA 3VSRA 3OM4A 5C0PA 3VSFA 3AKGA 3VT0A 4FFHA 5AY9A 1WL7A 3QZ4A 3ZXLA 2OXBA 1VKDA 3LF7A 4UDKA 5FLWA 5GLQA 4O8OA 2EXHA 3QEDA 4O8PA 4NOVA 5GLMA 3WN0A 3LDRA 4PVIA 3ZXKA 4U6DA 3UGHA 1YI7A 5FKCA 3KF3A 2B4WA 3TAWA 1ST8A 4FFGA 3AKHA 5ANNA 3LV4A 5FIXA 5GLLA 4MLGA 2XQRA 3WN2A 3WAUA 3LDKA 4COTA 4N2ZA 1UV4A 3ZXJA 3WPYA 2X8SA 3D5YA 5FKBA 3SC7X 3WMYA 5GLRA 4KCBA 3BYJA 3KF5A 5GLKA 1W2TA 3UGGA 3WMZA 4EQVA 3UGFA 3WPZA 5B6SA 4FFIA 2QQWA 3C7HA 2QQVA 3OM6A 5FMCA 1PT2A 2EXJA 4N2RA 3C7GA 2YFRA 4U6BA
chains in the Genus database with same CATH superfamily
2VDTA 5GLPA 3BYKA 3KSTA 5GLNA 3VT1A 3U75A 3LIGA 2AC1A 3BYLA 5A7VA 4PVAA 4UDJA 4UDGA 3D5ZA 3R67A 5FMDA 4AK7A 2QQUA 5AYDA 3WPVA 1Y9MA 3LFIA 4ONZA 5B6TA 5AYEA 3WATA 5GLOA 3BYNA 4KC7A 2ADEA 3OM7A 3D61A 3PIGA 3CU9A 2YFSA 3P2NA 4N4BA 4KC8A 4UDKE 3AKIA 2AEYA 1YRZA 1Y7BA 3QEEA 1UYPA 3AKFA 2X8FA 2AEZA 4UDIA 4N1IA 2EXKA 3VSZA 3WASA 3WPUA 3R4YA 4O8NA 3VT2A 5A8CA 1Y4WA 5FMBA 5FK8A 3K1UA 3C7OA 3WN1A 4AK6A 5JOZA 1GYHA 5AYCA 1Y9GA 1GYEB 3D60A 5JOWA 3OM2A 4AK5A 3OM5A 5JOYA 2ADDA 5FK7A 5A7VB 3RWKX 1GYDB 3LIHA 3QEFA 4QQSA 2EXIA 3LEMA 1TL2A 3U14A 5C2MA 1W18A 5A8DA 2YFTA 4KCAA 1YIFA 3NQHA 3C7FA 4FFFA 1OYGA 3QC2A 3VSSA 3R4ZA 3C2UA 2X8TA 4KMIA 4D47A 5JOXA 3PIJA 3C7EA 3VSRA 3OM4A 5C0PA 3VSFA 3AKGA 3VT0A 4FFHA 5AY9A 1WL7A 3QZ4A 3ZXLA 2OXBA 1VKDA 3LF7A 4UDKA 5FLWA 5GLQA 4O8OA 2EXHA 3QEDA 4O8PA 4NOVA 5GLMA 3WN0A 3LDRA 4PVIA 3ZXKA 4U6DA 3UGHA 1YI7A 5FKCA 3KF3A 2B4WA 3TAWA 1ST8A 4FFGA 3AKHA 5ANNA 3LV4A 5FIXA 5GLLA 4MLGA 2XQRA 3WN2A 3WAUA 3LDKA 4COTA 4N2ZA 1UV4A 3ZXJA 3WPYA 2X8SA 3D5YA 5FKBA 3SC7X 3WMYA 5GLRA 4KCBA 3BYJA 3KF5A 5GLKA 1W2TA 3UGGA 3WMZA 4EQVA 3UGFA 3WPZA 5B6SA 4FFIA 2QQWA 3C7HA 2QQVA 3OM6A 5FMCA 1PT2A 2EXJA 4N2RA 3C7GA 2YFRA 4U6BA
chains in the Genus database with same CATH topology
2VDTA 5GLPA 3BYKA 3KSTA 5GLNA 3VT1A 3U75A 3LIGA 2AC1A 3BYLA 5A7VA 4PVAA 4UDJA 4UDGA 3D5ZA 3R67A 5FMDA 4AK7A 2QQUA 5AYDA 3WPVA 1Y9MA 3LFIA 4ONZA 5B6TA 5AYEA 3WATA 5GLOA 3BYNA 4KC7A 2ADEA 3OM7A 3D61A 3PIGA 3CU9A 2YFSA 3P2NA 4N4BA 4KC8A 4UDKE 3AKIA 2AEYA 1YRZA 1Y7BA 3QEEA 1UYPA 3AKFA 2X8FA 2AEZA 4UDIA 4N1IA 2EXKA 3VSZA 3WASA 3WPUA 3R4YA 4O8NA 3VT2A 5A8CA 1Y4WA 5FMBA 5FK8A 3K1UA 3C7OA 3WN1A 4AK6A 5JOZA 1GYHA 5AYCA 1Y9GA 1GYEB 3D60A 5JOWA 3OM2A 4AK5A 3OM5A 5JOYA 2ADDA 5FK7A 5A7VB 3RWKX 1GYDB 3LIHA 3QEFA 4QQSA 2EXIA 3LEMA 3U14A 1W18A 5A8DA 2YFTA 4KCAA 1YIFA 3NQHA 3C7FA 4FFFA 1OYGA 3QC2A 3VSSA 3R4ZA 3C2UA 2X8TA 4KMIA 4D47A 5JOXA 3PIJA 3C7EA 3VSRA 3OM4A 5C0PA 3VSFA 3AKGA 3VT0A 4FFHA 5AY9A 1WL7A 3QZ4A 3ZXLA 2OXBA 1VKDA 3LF7A 4UDKA 5FLWA 5GLQA 4O8OA 2EXHA 3QEDA 4O8PA 4NOVA 5GLMA 3WN0A 3LDRA 4PVIA 3ZXKA 4U6DA 3UGHA 1YI7A 5FKCA 3KF3A 2B4WA 3TAWA 1ST8A 4FFGA 3AKHA 5ANNA 3LV4A 5FIXA 5GLLA 4MLGA 2XQRA 3WN2A 3WAUA 3LDKA 4COTA 4N2ZA 1UV4A 3ZXJA 3WPYA 2X8SA 3D5YA 5FKBA 3SC7X 3WMYA 5GLRA 4KCBA 3BYJA 3KF5A 5GLKA 1W2TA 3UGGA 3WMZA 4EQVA 3UGFA 3WPZA 5B6SA 4FFIA 2QQWA 3C7HA 2QQVA 3OM6A 5FMCA 1PT2A 2EXJA 4N2RA 3C7GA 2YFRA 4U6BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VDT A;  5GLP A;  3BYK A;  3KST A;  5GLN A;  3VT1 A;  3U75 A;  3LIG A;  2AC1 A;  3BYL A;  5A7V A;  4PVA A;  4UDJ A;  4UDG A;  3D5Z A;  3R67 A;  5FMD A;  4AK7 A;  2QQU A;  5AYD A;  3WPV A;  1Y9M A;  3LFI A;  4ONZ A;  5B6T A;  5AYE A;  3WAT A;  5GLO A;  3BYN A;  4KC7 A;  2ADE A;  3OM7 A;  3D61 A;  3PIG A;  3CU9 A;  2YFS A;  3P2N A;  4N4B A;  4KC8 A;  4UDK E;  3AKI A;  2AEY A;  1YRZ A;  1Y7B A;  3QEE A;  1UYP A;  3AKF A;  2X8F A;  2AEZ A;  4UDI A;  4N1I A;  2EXK A;  3VSZ A;  3WAS A;  3WPU A;  3R4Y A;  4O8N A;  3VT2 A;  5A8C A;  1Y4W A;  5FMB A;  5FK8 A;  3K1U A;  3C7O A;  3WN1 A;  4AK6 A;  5JOZ A;  1GYH A;  5AYC A;  1Y9G A;  1GYE B;  3D60 A;  5JOW A;  3OM2 A;  4AK5 A;  3OM5 A;  5JOY A;  2ADD A;  5FK7 A;  5A7V B;  3RWK X;  1GYD B;  3LIH A;  3QEF A;  4QQS A;  2EXI A;  3LEM A;  3U14 A;  1W18 A;  5A8D A;  2YFT A;  4KCA A;  1YIF A;  3NQH A;  3C7F A;  4FFF A;  1OYG A;  3QC2 A;  3VSS A;  3R4Z A;  3C2U A;  2X8T A;  4KMI A;  4D47 A;  5JOX A;  3PIJ A;  3C7E A;  3VSR A;  3OM4 A;  5C0P A;  3VSF A;  3AKG A;  3VT0 A;  4FFH A;  5AY9 A;  1WL7 A;  3QZ4 A;  3ZXL A;  2OXB A;  1VKD A;  3LF7 A;  4UDK A;  5FLW A;  5GLQ A;  4O8O A;  2EXH A;  3QED A;  4O8P A;  4NOV A;  5GLM A;  3WN0 A;  3LDR A;  4PVI A;  3ZXK A;  4U6D A;  3UGH A;  1YI7 A;  5FKC A;  3KF3 A;  2B4W A;  3TAW A;  1ST8 A;  4FFG A;  3AKH A;  5ANN A;  3LV4 A;  5FIX A;  5GLL A;  4MLG A;  2XQR A;  3WN2 A;  3WAU A;  3LDK A;  4COT A;  4N2Z A;  1UV4 A;  3ZXJ A;  3WPY A;  2X8S A;  3D5Y A;  5FKB A;  3SC7 X;  3WMY A;  5GLR A;  4KCB A;  3BYJ A;  3KF5 A;  5GLK A;  1W2T A;  3UGG A;  3WMZ A;  4EQV A;  3UGF A;  3WPZ A;  5B6S A;  4FFI A;  2QQW A;  3C7H A;  2QQV A;  3OM6 A;  5FMC A;  1PT2 A;  2EXJ A;  4N2R A;  3C7G A;  2YFR A;  4U6B A; 
#chains in the Genus database with same CATH topology
 2VDT A;  5GLP A;  3BYK A;  3KST A;  5GLN A;  3VT1 A;  3U75 A;  3LIG A;  2AC1 A;  3BYL A;  5A7V A;  4PVA A;  4UDJ A;  4UDG A;  3D5Z A;  3R67 A;  5FMD A;  4AK7 A;  2QQU A;  5AYD A;  3WPV A;  1Y9M A;  3LFI A;  4ONZ A;  5B6T A;  5AYE A;  3WAT A;  5GLO A;  3BYN A;  4KC7 A;  2ADE A;  3OM7 A;  3D61 A;  3PIG A;  3CU9 A;  2YFS A;  3P2N A;  4N4B A;  4KC8 A;  4UDK E;  3AKI A;  2AEY A;  1YRZ A;  1Y7B A;  3QEE A;  1UYP A;  3AKF A;  2X8F A;  2AEZ A;  4UDI A;  4N1I A;  2EXK A;  3VSZ A;  3WAS A;  3WPU A;  3R4Y A;  4O8N A;  3VT2 A;  5A8C A;  1Y4W A;  5FMB A;  5FK8 A;  3K1U A;  3C7O A;  3WN1 A;  4AK6 A;  5JOZ A;  1GYH A;  5AYC A;  1Y9G A;  1GYE B;  3D60 A;  5JOW A;  3OM2 A;  4AK5 A;  3OM5 A;  5JOY A;  2ADD A;  5FK7 A;  5A7V B;  3RWK X;  1GYD B;  3LIH A;  3QEF A;  4QQS A;  2EXI A;  3LEM A;  1TL2 A;  3U14 A;  5C2M A;  1W18 A;  5A8D A;  2YFT A;  4KCA A;  1YIF A;  3NQH A;  3C7F A;  4FFF A;  1OYG A;  3QC2 A;  3VSS A;  3R4Z A;  3C2U A;  2X8T A;  4KMI A;  4D47 A;  5JOX A;  3PIJ A;  3C7E A;  3VSR A;  3OM4 A;  5C0P A;  3VSF A;  3AKG A;  3VT0 A;  4FFH A;  5AY9 A;  1WL7 A;  3QZ4 A;  3ZXL A;  2OXB A;  1VKD A;  3LF7 A;  4UDK A;  5FLW A;  5GLQ A;  4O8O A;  2EXH A;  3QED A;  4O8P A;  4NOV A;  5GLM A;  3WN0 A;  3LDR A;  4PVI A;  3ZXK A;  4U6D A;  3UGH A;  1YI7 A;  5FKC A;  3KF3 A;  2B4W A;  3TAW A;  1ST8 A;  4FFG A;  3AKH A;  5ANN A;  3LV4 A;  5FIX A;  5GLL A;  4MLG A;  2XQR A;  3WN2 A;  3WAU A;  3LDK A;  4COT A;  4N2Z A;  1UV4 A;  3ZXJ A;  3WPY A;  2X8S A;  3D5Y A;  5FKB A;  3SC7 X;  3WMY A;  5GLR A;  4KCB A;  3BYJ A;  3KF5 A;  5GLK A;  1W2T A;  3UGG A;  3WMZ A;  4EQV A;  3UGF A;  3WPZ A;  5B6S A;  4FFI A;  2QQW A;  3C7H A;  2QQV A;  3OM6 A;  5FMC A;  1PT2 A;  2EXJ A;  4N2R A;  3C7G A;  2YFR A;  4U6B A; 
#chains in the Genus database with same CATH homology
 2VDT A;  5GLP A;  3BYK A;  3KST A;  5GLN A;  3VT1 A;  3U75 A;  3LIG A;  2AC1 A;  3BYL A;  5A7V A;  4PVA A;  4UDJ A;  4UDG A;  3D5Z A;  3R67 A;  5FMD A;  4AK7 A;  2QQU A;  5AYD A;  3WPV A;  1Y9M A;  3LFI A;  4ONZ A;  5B6T A;  5AYE A;  3WAT A;  5GLO A;  3BYN A;  4KC7 A;  2ADE A;  3OM7 A;  3D61 A;  3PIG A;  3CU9 A;  2YFS A;  3P2N A;  4N4B A;  4KC8 A;  4UDK E;  3AKI A;  2AEY A;  1YRZ A;  1Y7B A;  3QEE A;  1UYP A;  3AKF A;  2X8F A;  2AEZ A;  4UDI A;  4N1I A;  2EXK A;  3VSZ A;  3WAS A;  3WPU A;  3R4Y A;  4O8N A;  3VT2 A;  5A8C A;  1Y4W A;  5FMB A;  5FK8 A;  3K1U A;  3C7O A;  3WN1 A;  4AK6 A;  5JOZ A;  1GYH A;  5AYC A;  1Y9G A;  1GYE B;  3D60 A;  5JOW A;  3OM2 A;  4AK5 A;  3OM5 A;  5JOY A;  2ADD A;  5FK7 A;  5A7V B;  3RWK X;  1GYD B;  3LIH A;  3QEF A;  4QQS A;  2EXI A;  3LEM A;  3U14 A;  1W18 A;  5A8D A;  2YFT A;  4KCA A;  1YIF A;  3NQH A;  3C7F A;  4FFF A;  1OYG A;  3QC2 A;  3VSS A;  3R4Z A;  3C2U A;  2X8T A;  4KMI A;  4D47 A;  5JOX A;  3PIJ A;  3C7E A;  3VSR A;  3OM4 A;  5C0P A;  3VSF A;  3AKG A;  3VT0 A;  4FFH A;  5AY9 A;  1WL7 A;  3QZ4 A;  3ZXL A;  2OXB A;  1VKD A;  3LF7 A;  4UDK A;  5FLW A;  5GLQ A;  4O8O A;  2EXH A;  3QED A;  4O8P A;  4NOV A;  5GLM A;  3WN0 A;  3LDR A;  4PVI A;  3ZXK A;  4U6D A;  3UGH A;  1YI7 A;  5FKC A;  3KF3 A;  2B4W A;  3TAW A;  1ST8 A;  4FFG A;  3AKH A;  5ANN A;  3LV4 A;  5FIX A;  5GLL A;  4MLG A;  2XQR A;  3WN2 A;  3WAU A;  3LDK A;  4COT A;  4N2Z A;  1UV4 A;  3ZXJ A;  3WPY A;  2X8S A;  3D5Y A;  5FKB A;  3SC7 X;  3WMY A;  5GLR A;  4KCB A;  3BYJ A;  3KF5 A;  5GLK A;  1W2T A;  3UGG A;  3WMZ A;  4EQV A;  3UGF A;  3WPZ A;  5B6S A;  4FFI A;  2QQW A;  3C7H A;  2QQV A;  3OM6 A;  5FMC A;  1PT2 A;  2EXJ A;  4N2R A;  3C7G A;  2YFR A;  4U6B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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