The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
111
|
sequence length |
299
|
structure length |
299
|
Chain Sequence |
b'ESRTSAPSGCLTVGSDGTYSTIGDALDALGSSTSSACIYVASGTYEEQLTIDYAGDLTLYGETTDTSTYKDNVVTITHTISSPDAGSLDKSATVNVVSDGFSMYNINVENGYGEGAQAVALVGNADQLGFYGCQFSGYQDTLYVKAGTQYYSNCMIEGAVDYIFGDASVWFGECDIVSNGAGAITASSRETSSDSGWYAIDNCNIKAASGVSLTEEVYLGRPWRVLARVIYQNSVLSDIINPKGWTTMADGATPLYYEYNNSGAGSDTSDREYETSISAAVDKTTVLGETWGDWIDRSY'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control.
pubmed doi rcsb |
| molecule keywords |
Pectinesterase
|
| source organism |
Aspergillus niger (strain atcc 1015 / cbs 113.46 / fgsc a1144 / lshb ac4 / nctc
|
| molecule tags |
Hydrolase
|
| total genus |
111
|
| structure length |
299
|
| sequence length |
299
|
| ec nomenclature |
ec
3.1.1.11: Pectinesterase. |
| pdb deposition date | 2015-06-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01095 | Pectinesterase | Pectinesterase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like |
#chains in the Genus database with same CATH superfamily 4W8Q A; 4XOR A; 1PE9 A; 1AIR A; 1O8J A; 1O8L A; 2UVF A; 2NST A; 2VJJ A; 4Z05 A; 2QX3 A; 1OOC A; 4I84 A; 4XOP A; 1X0C A; 1OFM A; 5AMV A; 1CZF A; 4XLA A; 2NTQ A; 3B4N A; 2O04 A; 1PLU A; 1WMR A; 1OGO X; 4XKV A; 4AVZ A; 4W8T A; 1K5C A; 2O17 A; 2IQ7 A; 3VSV A; 1PXZ A; 3GQ9 A; 2UVE A; 2O1D A; 3SUC A; 3FY3 A; 4Z06 A; 1RU4 A; 2Z8G A; 2INU A; 1IDJ A; 3GQ8 A; 3VSU A; 4OJ6 A; 4PMH A; 1O8H A; 2NTP A; 2NSP A; 1DBG A; 2VJI A; 1EE6 A; 3GQA A; 4W8S A; 4XNF A; 4YEJ A; 4HWV A; 2X6Y A; 4MXN A; 4YZ0 A; 2O0V A; 4U4B A; 4NK8 A; 3B90 A; 1IDK A; 4OZY A; 2VBK A; 2EWE A; 2VBE A; 4XLE A; 4XQF A; 3VMV A; 1H80 A; 4OZZ A; 2NTB A; 1O8K A; 1DBO A; 1HG8 A; 4YZQ A; 4Z03 A; 3VST A; 2QXZ A; 4W8R A; 2BSP A; 1KCC A; 2ODL A; 3UW0 A; 5C1C A; 1QCX A; 4XN0 A; 2VBM A; 4XON A; 2NZM A; 2X6W A; 4XMY A; 3B8Y A; 1NHC A; 1RWR A; 4XOT A; 1O8F A; 4EW9 A; 2PEC A; 1BN8 A; 4YZA A; 1OGM X; 2X85 A; 4YZX A; 4NK6 A; 1O8M A; 4XN3 A; 3GQ7 A; 1OFL A; 1VBL A; 1O8E A; 2X3H A; 2X6X A; 1JTA A; 3T9G A; 1BHE A; 3ZSC A; 4OJ5 A; 4XR6 A; 4OJL A; 1KTW A; 1O8D A; 3GRH A; 1KCD A; 3JUR A; 4YEL A; 1QJV A; 1JRG A; 2PYG A; 4OJP A; 5C1E A; 4XM3 A; 4XKW A; 2O0W A; 1IB4 A; 4XL9 A; 2INV A; 4U49 A; 4MR0 A; 3EQN A; 4OJO A; 3ZPP A; 3WWG A; 2QY1 A; 2PYH A; 4URR A; 1O8G A; 1O88 A; 1GQ8 A; 3LMW A; 2NT9 A; 4XLH A; 4C2L A; 1XG2 A; 2NT6 A; 1O8I A; 3VMW A; 1IA5 A; 3KRG A; 1RMG A; 3EQO A; 4XLF A; 4XLC A; #chains in the Genus database with same CATH topology 4W8Q A; 4XOR A; 1PE9 A; 1AIR A; 1O8J A; 1O8L A; 2G0Y A; 4OM9 A; 2UVF A; 2NST A; 1HF2 A; 2VJJ A; 3H09 A; 4Z05 A; 2QX3 A; 1OOC A; 4YDT A; 4I84 A; 4XOP A; 1X0C A; 3PSZ A; 3RIQ A; 3TH0 A; 1DAB A; 1OFM A; 2VFM A; 1CZF A; 5AMV A; 1QA2 A; 1LLW A; 4OPW A; 4XLA A; 2NTQ A; 3B4N A; 4JRA C; 5DNS A; 2O04 A; 1PLU A; 1WMR A; 1OGO X; 3SZE A; 4XKV A; 3ML3 A; 4AVZ A; 1EA0 A; 4W8T A; 1K5C A; 2O17 A; 2IQ7 A; 3VSV A; 5JLV C; 2J8I A; 2W7Z A; 1PXZ A; 3GQ9 A; 2UVE A; 2O1D A; 2XTX A; 4KH3 A; 3SUC A; 3FY3 A; 2VFO A; 4Z06 A; 1RU4 A; 2VFQ A; 2INU A; 1IDJ A; 2Z8G A; 3GQ8 A; 1TSP A; 3VSU A; 4OJ6 A; 4PMH A; 1O8H A; 2NTP A; 2NSP A; 1DBG A; 2VJI A; 1EE6 A; 3GQA A; 4W8S A; 4XNF A; 1OFE A; 2J8K A; 3SYJ A; 3BH6 B; 4YEJ A; 4HWV A; 4YFO A; 2X6Y A; 4XLF A; 1QA3 A; 4MXN A; 4YZ0 A; 2O0V A; 4U4B A; 4NK8 A; 3B90 A; 3BH7 B; 1IDK A; 4OZY A; 2VBK A; 1L1I A; 2EWE A; 2VBE A; 4XLE A; 2BM7 A; 4XQF A; 3VMV A; 1H80 A; 4OZZ A; 2NTB A; 1O8K A; 1DBO A; 1HG8 A; 2VFP A; 4YZQ A; 4Z03 A; 1K4Z A; 3VST A; 2QXZ A; 4YCQ A; 3NB2 A; 4W8R A; 2BSP A; 1LLZ A; 2ODL A; 2VFN A; 3UW0 A; 5C1C A; 2B0R A; 1KCC A; 1QA1 A; 1QRB A; 1QCX A; 4XN0 A; 3N6Z A; 2VBM A; 1TYU A; 4YC5 A; 2IOU G; 2NZM A; 4XON A; 2X6W A; 4XMY A; 3SY2 A; 3B8Y A; 1NHC A; 3NAW A; 1RWR A; 4XOT A; 1O8F A; 4EW9 A; 2PEC A; 1BN8 A; 4YZA A; 1OGM X; 2X85 A; 3DU1 X; 4YZX A; 4NK6 A; 1O8M A; 1QRC A; 3JX8 A; 2BX6 A; 4XN3 A; 2XT4 A; 3GQ7 A; 1OFD A; 1OFL A; 1VBL A; 1O8E A; 2X3H A; 2X6X A; 2YUH A; 1JTA A; 1CLW A; 3LYC A; 3T9G A; 1BHE A; 3ZSC A; 4OJ5 A; 4XR6 A; 1WXR A; 2V5I A; 3PET A; 4OJL A; 1EZG A; 1KTW A; 3SQV A; 1O8D A; 2O6W A; 3GRH A; 2BM5 A; 3AK5 A; 1KCD A; 1TYW A; 3JUR A; 1QQ1 A; 4YEL A; 1QJV A; 1K8F A; 2BM6 A; 2QYU A; 3PSS A; 1KQ5 A; 1JRG A; 2PYG A; 2XT2 A; 4OJP A; 5C1E A; 4XM3 A; 3LJY A; 2O0W A; 4XKW A; 1IB4 A; 4XL9 A; 2INV A; 4U49 A; 4MR0 A; 3EQN A; 4OJO A; 3ZPP A; 2QZA A; 3WWG A; 1LM1 A; 2QY1 A; 2BM4 A; 2PYH A; 1TYX A; 4URR A; 1O8G A; 1O88 A; 1GQ8 A; 2XTW A; 3LMW A; 4V02 C; 2NT9 A; 2XTY A; 4XLH A; 3P4G A; 4C2L A; 1XG2 A; 2NT6 A; 1O8I A; 3VMW A; 1IA5 A; 3KRG A; 2XC1 A; 5JMC B; 3N90 A; 1RMG A; 3EQO A; 4YEI A; 1TYV A; 2F3L A; 4XLC A; #chains in the Genus database with same CATH homology 4W8Q A; 4XOR A; 1PE9 A; 1AIR A; 1O8J A; 1O8L A; 2UVF A; 2NST A; 2VJJ A; 4Z05 A; 2QX3 A; 1OOC A; 4I84 A; 4XOP A; 1X0C A; 1OFM A; 5AMV A; 1CZF A; 4XLA A; 2NTQ A; 3B4N A; 2O04 A; 1PLU A; 1WMR A; 1OGO X; 4XKV A; 4AVZ A; 4W8T A; 1K5C A; 2O17 A; 2IQ7 A; 3VSV A; 1PXZ A; 3GQ9 A; 2UVE A; 2O1D A; 3SUC A; 3FY3 A; 4Z06 A; 1RU4 A; 2Z8G A; 2INU A; 1IDJ A; 3GQ8 A; 3VSU A; 4OJ6 A; 4PMH A; 1O8H A; 2NTP A; 2NSP A; 1DBG A; 2VJI A; 1EE6 A; 3GQA A; 4W8S A; 4XNF A; 4YEJ A; 4HWV A; 2X6Y A; 4MXN A; 4YZ0 A; 2O0V A; 4U4B A; 4NK8 A; 3B90 A; 1IDK A; 4OZY A; 2VBK A; 2EWE A; 2VBE A; 4XLE A; 4XQF A; 3VMV A; 1H80 A; 4OZZ A; 2NTB A; 1O8K A; 1DBO A; 1HG8 A; 4YZQ A; 4Z03 A; 3VST A; 2QXZ A; 4W8R A; 2BSP A; 1KCC A; 2ODL A; 3UW0 A; 5C1C A; 1QCX A; 4XN0 A; 2VBM A; 4XON A; 2NZM A; 2X6W A; 4XMY A; 3B8Y A; 1NHC A; 1RWR A; 4XOT A; 1O8F A; 4EW9 A; 2PEC A; 1BN8 A; 4YZA A; 1OGM X; 2X85 A; 4YZX A; 4NK6 A; 1O8M A; 4XN3 A; 3GQ7 A; 1OFL A; 1VBL A; 1O8E A; 2X3H A; 2X6X A; 1JTA A; 3T9G A; 1BHE A; 3ZSC A; 4OJ5 A; 4XR6 A; 4OJL A; 1KTW A; 1O8D A; 3GRH A; 1KCD A; 3JUR A; 4YEL A; 1QJV A; 1JRG A; 2PYG A; 4OJP A; 5C1E A; 4XM3 A; 4XKW A; 2O0W A; 1IB4 A; 4XL9 A; 2INV A; 4U49 A; 4MR0 A; 3EQN A; 4OJO A; 3ZPP A; 3WWG A; 2QY1 A; 2PYH A; 4URR A; 1O8G A; 1O88 A; 1GQ8 A; 3LMW A; 2NT9 A; 4XLH A; 4C2L A; 1XG2 A; 2NT6 A; 1O8I A; 3VMW A; 1IA5 A; 3KRG A; 1RMG A; 3EQO A; 4XLF A; 4XLC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
