5C1CA

Crystal structure of the pectin methylesterase from aspergillus niger in deglycosylated form
Total Genus 111
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
299
structure length
299
Chain Sequence
ESRTSAPSGCLTVGSDGTYSTIGDALDALGSSTSSACIYVASGTYEEQLTIDYAGDLTLYGETTDTSTYKDNVVTITHTISSPDAGSLDKSATVNVVSDGFSMYNINVENGYGEGAQAVALVGNADQLGFYGCQFSGYQDTLYVKAGTQYYSNCMIEGAVDYIFGDASVWFGECDIVSNGAGAITASSRETSSDSGWYAIDNCNIKAASGVSLTEEVYLGRPWRVLARVIYQNSVLSDIINPKGWTTMADGATPLYYEYNNSGAGSDTSDREYETSISAAVDKTTVLGETWGDWIDRSY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Aspergillus niger (strain atcc 1015 / cbs 113.46 / fgsc a1144 / lshb ac4 / nctc
publication title Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control.
pubmed doi rcsb
molecule keywords Pectinesterase
total genus 111
structure length 299
sequence length 299
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2015-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 5c1cA00
1RU4A 2INUA 1OFMA 1QJVA 4XN3A 2QX3A 1O8IA 3WWGA 1O88A 4W8SA 1OFLA 1JRGA 4XR6A 4XLHA 5AMVA 3ZSCA 3B90A 2X6XA 4NK8A 2PECA 3GQAA 2PYHA 2NSPA 3GQ8A 4I84A 3B4NA 1CZFA 1O8DA 3VMVA 3EQNA 4OJPA 1EE6A 1O8KA 2O17A 4YZ0A 4PMHA 4URRA 5C1CA 3VSTA 4EW9A 1BN8A 3LMWA 2NT9A 4XL9A 1OOCA 4YEJA 3SUCA 4XQFA 4W8TA 4XOTA 1OGOX 1IA5A 1K5CA 1O8GA 4XORA 4OJOA 4YZAA 4XM3A 2O1DA 4YZXA 2VBKA 4YELA 3ZPPA 2BSPA 4OJ5A 2IQ7A 3UW0A 4XN0A 1O8HA 2NTPA 4MXNA 4XONA 2UVFA 2X6YA 2VBMA 4C2LA 1WMRA 2VBEA 2O04A 2O0WA 1IDKA 4XKWA 4OJLA 2NT6A 4W8QA 2UVEA 2X6WA 3GQ7A 4MR0A 1DBOA 1GQ8A 3GRHA 2NTBA 3JURA 1HG8A 1QCXA 3GQ9A 1O8EA 1JTAA 1KTWA 1H80A 2Z8GA 4Z06A 3VMWA 1AIRA 4HWVA 1IDJA 4XNFA 1VBLA 1O8LA 1O8MA 2VJIA 1OGMX 1RMGA 4YZQA 2NTQA 2QXZA 4U4BA 4XLAA 1O8JA 2X3HA 1XG2A 1KCCA 4AVZA 4W8RA 4Z05A 4XLFA 1PLUA 2INVA 3EQOA 3VSVA 2PYGA 1KCDA 4OZYA 2ODLA 1RWRA 4XLEA 1IB4A 4OJ6A 4XMYA 4XKVA 1O8FA 3T9GA 4NK6A 1NHCA 2X85A 2EWEA 4XLCA 5C1EA 1X0CA 2QY1A 1DBGA 1PE9A 2NZMA 1PXZA 2NSTA 4XOPA 2O0VA 2VJJA 3FY3A 3B8YA 3VSUA 4U49A 4Z03A 3KRGA 1BHEA 4OZZA
chains in the Genus database with same CATH superfamily
1RU4A 4YC5A 2INUA 1OFMA 1QJVA 4XN3A 2QYUA 2QX3A 4V02C 3SY2A 1O8IA 2BX6A 3WWGA 1O88A 4W8SA 1K4ZA 1TYWA 1OFLA 1JRGA 3NB2A 4XR6A 1K8FA 4XLHA 3SZEA 5AMVA 3ZSCA 3BH6B 2J8IA 3B90A 5JMCB 2X6XA 4NK8A 2PECA 2QZAA 3GQAA 2O6WA 1TYUA 2PYHA 2NSPA 3GQ8A 4I84A 3B4NA 1KQ5A 1CZFA 1O8DA 3VMVA 3EQNA 2VFPA 4OJPA 1EE6A 1O8KA 2O17A 4YZ0A 3DU1X 4PMHA 4URRA 5C1CA 2G0YA 3VSTA 2XT4A 1BN8A 3LMWA 2NT9A 4XL9A 2BM6A 1OOCA 4EW9A 1EA0A 4YEJA 1QRBA 3SUCA 4XQFA 1LLZA 4W8TA 4XOTA 1OGOX 1IA5A 1K5CA 2VFQA 1O8GA 1QA3A 2XT2A 4XORA 2VFOA 4OJOA 4XM3A 2F3LA 2O1DA 2VBKA 4YZAA 4YELA 2BSPA 4OJ5A 4YZXA 3ZPPA 2IQ7A 3UW0A 4OM9A 4XN0A 4YFOA 1O8HA 2NTPA 4MXNA 4XONA 3SYJA 2UVFA 2X6YA 2VBMA 2VFMA 4C2LA 3JX8A 1WMRA 2VBEA 2O04A 2O0WA 1IDKA 4XKWA 4OJLA 1LLWA 2NT6A 5DNSA 2BM4A 4W8QA 2UVEA 2X6WA 3GQ7A 4MR0A 3SQVA 1DBOA 1GQ8A 3GRHA 2B0RA 2NTBA 3JURA 4JRAC 2BM7A 1HG8A 2XTXA 3N6ZA 3P4GA 3TH0A 1QCXA 4YEIA 2J8KA 3GQ9A 3LYCA 1O8EA 1JTAA 3ML3A 1KTWA 1H80A 2Z8GA 2XTYA 3N90A 4Z06A 1AIRA 4HWVA 1IDJA 3RIQA 3NAWA 4XNFA 3PETA 1QRCA 1O8LA 1O8MA 1VBLA 2VJIA 1OGMX 3BH7B 1L1IA 1RMGA 4YZQA 4OPWA 2NTQA 1WXRA 2QXZA 1LM1A 4U4BA 1DABA 5JLVC 2XC1A 4XLAA 1O8JA 1TYVA 2X3HA 1OFEA 1XG2A 4YDTA 1KCCA 4AVZA 4W8RA 4YCQA 4Z05A 4XLFA 1PLUA 2INVA 2V5IA 3EQOA 3VSVA 2PYGA 3AK5A 1KCDA 2VFNA 4OZYA 2ODLA 1RWRA 4XLEA 1IB4A 1QA2A 2W7ZA 4OJ6A 3PSSA 4XMYA 4XKVA 1OFDA 2YUHA 1O8FA 3T9GA 2IOUG 4NK6A 1NHCA 2X85A 2EWEA 1HF2A 1TSPA 4XLCA 1CLWA 5C1EA 1X0CA 2QY1A 1DBGA 1PE9A 1TYXA 1EZGA 2BM5A 2NZMA 1PXZA 2NSTA 4XOPA 2O0VA 2VJJA 3FY3A 3H09A 1QQ1A 2XTWA 3B8YA 1QA1A 3PSZA 3VSUA 4U49A 4Z03A 3KRGA 1BHEA 4OZZA 3VMWA 3LJYA 4KH3A
chains in the Genus database with same CATH topology
1RU4A 2INUA 1OFMA 1QJVA 4XN3A 2QX3A 1O8IA 3WWGA 1O88A 4W8SA 1OFLA 1JRGA 4XR6A 4XLHA 5AMVA 3ZSCA 3B90A 2X6XA 4NK8A 2PECA 3GQAA 2PYHA 2NSPA 3GQ8A 4I84A 3B4NA 1CZFA 1O8DA 3VMVA 3EQNA 4OJPA 1EE6A 1O8KA 2O17A 4YZ0A 4PMHA 4URRA 5C1CA 3VSTA 4EW9A 1BN8A 3LMWA 2NT9A 4XL9A 1OOCA 4YEJA 3SUCA 4XQFA 4W8TA 4XOTA 1OGOX 1IA5A 1K5CA 1O8GA 4XORA 4OJOA 4YZAA 4XM3A 2O1DA 4YZXA 2VBKA 4YELA 3ZPPA 2BSPA 4OJ5A 2IQ7A 3UW0A 4XN0A 1O8HA 2NTPA 4MXNA 4XONA 2UVFA 2X6YA 2VBMA 4C2LA 1WMRA 2VBEA 2O04A 2O0WA 1IDKA 4XKWA 4OJLA 2NT6A 4W8QA 2UVEA 2X6WA 3GQ7A 4MR0A 1DBOA 1GQ8A 3GRHA 2NTBA 3JURA 1HG8A 1QCXA 3GQ9A 1O8EA 1JTAA 1KTWA 1H80A 2Z8GA 4Z06A 3VMWA 1AIRA 4HWVA 1IDJA 4XNFA 1VBLA 1O8LA 1O8MA 2VJIA 1OGMX 1RMGA 4YZQA 2NTQA 2QXZA 4U4BA 4XLAA 1O8JA 2X3HA 1XG2A 1KCCA 4AVZA 4W8RA 4Z05A 4XLFA 1PLUA 2INVA 3EQOA 3VSVA 2PYGA 1KCDA 4OZYA 2ODLA 1RWRA 4XLEA 1IB4A 4OJ6A 4XMYA 4XKVA 1O8FA 3T9GA 4NK6A 1NHCA 2X85A 2EWEA 4XLCA 5C1EA 1X0CA 2QY1A 1DBGA 1PE9A 2NZMA 1PXZA 2NSTA 4XOPA 2O0VA 2VJJA 3FY3A 3B8YA 3VSUA 4U49A 4Z03A 3KRGA 1BHEA 4OZZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RU4 A;  2INU A;  1OFM A;  1QJV A;  4XN3 A;  2QX3 A;  1O8I A;  3WWG A;  1O88 A;  4W8S A;  1OFL A;  1JRG A;  4XR6 A;  4XLH A;  5AMV A;  3ZSC A;  3B90 A;  2X6X A;  4NK8 A;  2PEC A;  3GQA A;  2PYH A;  2NSP A;  3GQ8 A;  4I84 A;  3B4N A;  1CZF A;  1O8D A;  3VMV A;  3EQN A;  4OJP A;  1EE6 A;  1O8K A;  2O17 A;  4YZ0 A;  4PMH A;  4URR A;  5C1C A;  3VST A;  4EW9 A;  1BN8 A;  3LMW A;  2NT9 A;  4XL9 A;  1OOC A;  4YEJ A;  3SUC A;  4XQF A;  4W8T A;  4XOT A;  1OGO X;  1IA5 A;  1K5C A;  1O8G A;  4XOR A;  4OJO A;  4YZA A;  4XM3 A;  2O1D A;  4YZX A;  2VBK A;  4YEL A;  3ZPP A;  2BSP A;  4OJ5 A;  2IQ7 A;  3UW0 A;  4XN0 A;  1O8H A;  2NTP A;  4MXN A;  4XON A;  2UVF A;  2X6Y A;  2VBM A;  4C2L A;  1WMR A;  2VBE A;  2O04 A;  2O0W A;  1IDK A;  4XKW A;  4OJL A;  2NT6 A;  4W8Q A;  2UVE A;  2X6W A;  3GQ7 A;  4MR0 A;  1DBO A;  1GQ8 A;  3GRH A;  2NTB A;  3JUR A;  1HG8 A;  1QCX A;  3GQ9 A;  1O8E A;  1JTA A;  1KTW A;  1H80 A;  2Z8G A;  4Z06 A;  3VMW A;  1AIR A;  4HWV A;  1IDJ A;  4XNF A;  1VBL A;  1O8L A;  1O8M A;  2VJI A;  1OGM X;  1RMG A;  4YZQ A;  2NTQ A;  2QXZ A;  4U4B A;  4XLA A;  1O8J A;  2X3H A;  1XG2 A;  1KCC A;  4AVZ A;  4W8R A;  4Z05 A;  4XLF A;  1PLU A;  2INV A;  3EQO A;  3VSV A;  2PYG A;  1KCD A;  4OZY A;  2ODL A;  1RWR A;  4XLE A;  1IB4 A;  4OJ6 A;  4XMY A;  4XKV A;  1O8F A;  3T9G A;  4NK6 A;  1NHC A;  2X85 A;  2EWE A;  4XLC A;  5C1E A;  1X0C A;  2QY1 A;  1DBG A;  1PE9 A;  2NZM A;  1PXZ A;  2NST A;  4XOP A;  2O0V A;  2VJJ A;  3FY3 A;  3B8Y A;  3VSU A;  4U49 A;  4Z03 A;  3KRG A;  1BHE A;  4OZZ A; 
#chains in the Genus database with same CATH topology
 1RU4 A;  4YC5 A;  2INU A;  1OFM A;  1QJV A;  4XN3 A;  2QYU A;  2QX3 A;  4V02 C;  3SY2 A;  1O8I A;  2BX6 A;  3WWG A;  1O88 A;  4W8S A;  1K4Z A;  1TYW A;  1OFL A;  1JRG A;  3NB2 A;  4XR6 A;  1K8F A;  4XLH A;  3SZE A;  5AMV A;  3ZSC A;  3BH6 B;  2J8I A;  3B90 A;  5JMC B;  2X6X A;  4NK8 A;  2PEC A;  2QZA A;  3GQA A;  2O6W A;  1TYU A;  2PYH A;  2NSP A;  3GQ8 A;  4I84 A;  3B4N A;  1KQ5 A;  1CZF A;  1O8D A;  3VMV A;  3EQN A;  2VFP A;  4OJP A;  1EE6 A;  1O8K A;  2O17 A;  4YZ0 A;  3DU1 X;  4PMH A;  4URR A;  5C1C A;  2G0Y A;  3VST A;  2XT4 A;  1BN8 A;  3LMW A;  2NT9 A;  4XL9 A;  2BM6 A;  1OOC A;  4EW9 A;  1EA0 A;  4YEJ A;  1QRB A;  3SUC A;  4XQF A;  1LLZ A;  4W8T A;  4XOT A;  1OGO X;  1IA5 A;  1K5C A;  2VFQ A;  1O8G A;  1QA3 A;  2XT2 A;  4XOR A;  2VFO A;  4OJO A;  4XM3 A;  2F3L A;  2O1D A;  2VBK A;  4YZA A;  4YEL A;  2BSP A;  4OJ5 A;  4YZX A;  3ZPP A;  2IQ7 A;  3UW0 A;  4OM9 A;  4XN0 A;  4YFO A;  1O8H A;  2NTP A;  4MXN A;  4XON A;  3SYJ A;  2UVF A;  2X6Y A;  2VBM A;  2VFM A;  4C2L A;  3JX8 A;  1WMR A;  2VBE A;  2O04 A;  2O0W A;  1IDK A;  4XKW A;  4OJL A;  1LLW A;  2NT6 A;  5DNS A;  2BM4 A;  4W8Q A;  2UVE A;  2X6W A;  3GQ7 A;  4MR0 A;  3SQV A;  1DBO A;  1GQ8 A;  3GRH A;  2B0R A;  2NTB A;  3JUR A;  4JRA C;  2BM7 A;  1HG8 A;  2XTX A;  3N6Z A;  3P4G A;  3TH0 A;  1QCX A;  4YEI A;  2J8K A;  3GQ9 A;  3LYC A;  1O8E A;  1JTA A;  3ML3 A;  1KTW A;  1H80 A;  2Z8G A;  2XTY A;  3N90 A;  4Z06 A;  1AIR A;  4HWV A;  1IDJ A;  3RIQ A;  3NAW A;  4XNF A;  3PET A;  1QRC A;  1O8L A;  1O8M A;  1VBL A;  2VJI A;  1OGM X;  3BH7 B;  1L1I A;  1RMG A;  4YZQ A;  4OPW A;  2NTQ A;  1WXR A;  2QXZ A;  1LM1 A;  4U4B A;  1DAB A;  5JLV C;  2XC1 A;  4XLA A;  1O8J A;  1TYV A;  2X3H A;  1OFE A;  1XG2 A;  4YDT A;  1KCC A;  4AVZ A;  4W8R A;  4YCQ A;  4Z05 A;  4XLF A;  1PLU A;  2INV A;  2V5I A;  3EQO A;  3VSV A;  2PYG A;  3AK5 A;  1KCD A;  2VFN A;  4OZY A;  2ODL A;  1RWR A;  4XLE A;  1IB4 A;  1QA2 A;  2W7Z A;  4OJ6 A;  3PSS A;  4XMY A;  4XKV A;  1OFD A;  2YUH A;  1O8F A;  3T9G A;  2IOU G;  4NK6 A;  1NHC A;  2X85 A;  2EWE A;  1HF2 A;  1TSP A;  4XLC A;  1CLW A;  5C1E A;  1X0C A;  2QY1 A;  1DBG A;  1PE9 A;  1TYX A;  1EZG A;  2BM5 A;  2NZM A;  1PXZ A;  2NST A;  4XOP A;  2O0V A;  2VJJ A;  3FY3 A;  3H09 A;  1QQ1 A;  2XTW A;  3B8Y A;  1QA1 A;  3PSZ A;  3VSU A;  4U49 A;  4Z03 A;  3KRG A;  1BHE A;  4OZZ A;  3VMW A;  3LJY A;  4KH3 A; 
#chains in the Genus database with same CATH homology
 1RU4 A;  2INU A;  1OFM A;  1QJV A;  4XN3 A;  2QX3 A;  1O8I A;  3WWG A;  1O88 A;  4W8S A;  1OFL A;  1JRG A;  4XR6 A;  4XLH A;  5AMV A;  3ZSC A;  3B90 A;  2X6X A;  4NK8 A;  2PEC A;  3GQA A;  2PYH A;  2NSP A;  3GQ8 A;  4I84 A;  3B4N A;  1CZF A;  1O8D A;  3VMV A;  3EQN A;  4OJP A;  1EE6 A;  1O8K A;  2O17 A;  4YZ0 A;  4PMH A;  4URR A;  5C1C A;  3VST A;  4EW9 A;  1BN8 A;  3LMW A;  2NT9 A;  4XL9 A;  1OOC A;  4YEJ A;  3SUC A;  4XQF A;  4W8T A;  4XOT A;  1OGO X;  1IA5 A;  1K5C A;  1O8G A;  4XOR A;  4OJO A;  4YZA A;  4XM3 A;  2O1D A;  4YZX A;  2VBK A;  4YEL A;  3ZPP A;  2BSP A;  4OJ5 A;  2IQ7 A;  3UW0 A;  4XN0 A;  1O8H A;  2NTP A;  4MXN A;  4XON A;  2UVF A;  2X6Y A;  2VBM A;  4C2L A;  1WMR A;  2VBE A;  2O04 A;  2O0W A;  1IDK A;  4XKW A;  4OJL A;  2NT6 A;  4W8Q A;  2UVE A;  2X6W A;  3GQ7 A;  4MR0 A;  1DBO A;  1GQ8 A;  3GRH A;  2NTB A;  3JUR A;  1HG8 A;  1QCX A;  3GQ9 A;  1O8E A;  1JTA A;  1KTW A;  1H80 A;  2Z8G A;  4Z06 A;  3VMW A;  1AIR A;  4HWV A;  1IDJ A;  4XNF A;  1VBL A;  1O8L A;  1O8M A;  2VJI A;  1OGM X;  1RMG A;  4YZQ A;  2NTQ A;  2QXZ A;  4U4B A;  4XLA A;  1O8J A;  2X3H A;  1XG2 A;  1KCC A;  4AVZ A;  4W8R A;  4Z05 A;  4XLF A;  1PLU A;  2INV A;  3EQO A;  3VSV A;  2PYG A;  1KCD A;  4OZY A;  2ODL A;  1RWR A;  4XLE A;  1IB4 A;  4OJ6 A;  4XMY A;  4XKV A;  1O8F A;  3T9G A;  4NK6 A;  1NHC A;  2X85 A;  2EWE A;  4XLC A;  5C1E A;  1X0C A;  2QY1 A;  1DBG A;  1PE9 A;  2NZM A;  1PXZ A;  2NST A;  4XOP A;  2O0V A;  2VJJ A;  3FY3 A;  3B8Y A;  3VSU A;  4U49 A;  4Z03 A;  3KRG A;  1BHE A;  4OZZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...