5C1CA

Crystal structure of the pectin methylesterase from aspergillus niger in deglycosylated form
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
299
structure length
299
Chain Sequence
b'ESRTSAPSGCLTVGSDGTYSTIGDALDALGSSTSSACIYVASGTYEEQLTIDYAGDLTLYGETTDTSTYKDNVVTITHTISSPDAGSLDKSATVNVVSDGFSMYNINVENGYGEGAQAVALVGNADQLGFYGCQFSGYQDTLYVKAGTQYYSNCMIEGAVDYIFGDASVWFGECDIVSNGAGAITASSRETSSDSGWYAIDNCNIKAASGVSLTEEVYLGRPWRVLARVIYQNSVLSDIINPKGWTTMADGATPLYYEYNNSGAGSDTSDREYETSISAAVDKTTVLGETWGDWIDRSY'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control.
pubmed doi rcsb
molecule keywords Pectinesterase
source organism Aspergillus niger (strain atcc 1015 / cbs 113.46 / fgsc a1144 / lshb ac4 / nctc
molecule tags Hydrolase
total genus 111
structure length 299
sequence length 299
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2015-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 5c1cA00
4W8QA 4XORA 1PE9A 1AIRA 1O8JA 1O8LA 2UVFA 2NSTA 2VJJA 4Z05A 2QX3A 1OOCA 4I84A 4XOPA 1X0CA 1OFMA 5AMVA 1CZFA 4XLAA 2NTQA 3B4NA 2O04A 1PLUA 1WMRA 1OGOX 4XKVA 4AVZA 4W8TA 1K5CA 2O17A 2IQ7A 3VSVA 1PXZA 3GQ9A 2UVEA 2O1DA 3SUCA 3FY3A 4Z06A 1RU4A 2Z8GA 2INUA 1IDJA 3GQ8A 3VSUA 4OJ6A 4PMHA 1O8HA 2NTPA 2NSPA 1DBGA 2VJIA 1EE6A 3GQAA 4W8SA 4XNFA 4YEJA 4HWVA 2X6YA 4MXNA 4YZ0A 2O0VA 4U4BA 4NK8A 3B90A 1IDKA 4OZYA 2VBKA 2EWEA 2VBEA 4XLEA 4XQFA 3VMVA 1H80A 4OZZA 2NTBA 1O8KA 1DBOA 1HG8A 4YZQA 4Z03A 3VSTA 2QXZA 4W8RA 2BSPA 1KCCA 2ODLA 3UW0A 5C1CA 1QCXA 4XN0A 2VBMA 4XONA 2NZMA 2X6WA 4XMYA 3B8YA 1NHCA 1RWRA 4XOTA 1O8FA 4EW9A 2PECA 1BN8A 4YZAA 1OGMX 2X85A 4YZXA 4NK6A 1O8MA 4XN3A 3GQ7A 1OFLA 1VBLA 1O8EA 2X3HA 2X6XA 1JTAA 3T9GA 1BHEA 3ZSCA 4OJ5A 4XR6A 4OJLA 1KTWA 1O8DA 3GRHA 1KCDA 3JURA 4YELA 1QJVA 1JRGA 2PYGA 4OJPA 5C1EA 4XM3A 4XKWA 2O0WA 1IB4A 4XL9A 2INVA 4U49A 4MR0A 3EQNA 4OJOA 3ZPPA 3WWGA 2QY1A 2PYHA 4URRA 1O8GA 1O88A 1GQ8A 3LMWA 2NT9A 4XLHA 4C2LA 1XG2A 2NT6A 1O8IA 3VMWA 1IA5A 3KRGA 1RMGA 3EQOA 4XLFA 4XLCA
chains in the Genus database with same CATH superfamily
4W8QA 4XORA 1PE9A 1AIRA 1O8JA 1O8LA 2G0YA 4OM9A 2UVFA 2NSTA 1HF2A 2VJJA 3H09A 4Z05A 2QX3A 1OOCA 4YDTA 4I84A 4XOPA 1X0CA 3PSZA 3RIQA 3TH0A 1DABA 1OFMA 2VFMA 1CZFA 5AMVA 1QA2A 1LLWA 4OPWA 4XLAA 2NTQA 3B4NA 4JRAC 5DNSA 2O04A 1PLUA 1WMRA 1OGOX 3SZEA 4XKVA 3ML3A 4AVZA 1EA0A 4W8TA 1K5CA 2O17A 2IQ7A 3VSVA 5JLVC 2J8IA 2W7ZA 1PXZA 3GQ9A 2UVEA 2O1DA 2XTXA 4KH3A 3SUCA 3FY3A 2VFOA 4Z06A 1RU4A 2VFQA 2INUA 1IDJA 2Z8GA 3GQ8A 1TSPA 3VSUA 4OJ6A 4PMHA 1O8HA 2NTPA 2NSPA 1DBGA 2VJIA 1EE6A 3GQAA 4W8SA 4XNFA 1OFEA 2J8KA 3SYJA 3BH6B 4YEJA 4HWVA 4YFOA 2X6YA 4XLFA 1QA3A 4MXNA 4YZ0A 2O0VA 4U4BA 4NK8A 3B90A 3BH7B 1IDKA 4OZYA 2VBKA 1L1IA 2EWEA 2VBEA 4XLEA 2BM7A 4XQFA 3VMVA 1H80A 4OZZA 2NTBA 1O8KA 1DBOA 1HG8A 2VFPA 4YZQA 4Z03A 1K4ZA 3VSTA 2QXZA 4YCQA 3NB2A 4W8RA 2BSPA 1LLZA 2ODLA 2VFNA 3UW0A 5C1CA 2B0RA 1KCCA 1QA1A 1QRBA 1QCXA 4XN0A 3N6ZA 2VBMA 1TYUA 4YC5A 2IOUG 2NZMA 4XONA 2X6WA 4XMYA 3SY2A 3B8YA 1NHCA 3NAWA 1RWRA 4XOTA 1O8FA 4EW9A 2PECA 1BN8A 4YZAA 1OGMX 2X85A 3DU1X 4YZXA 4NK6A 1O8MA 1QRCA 3JX8A 2BX6A 4XN3A 2XT4A 3GQ7A 1OFDA 1OFLA 1VBLA 1O8EA 2X3HA 2X6XA 2YUHA 1JTAA 1CLWA 3LYCA 3T9GA 1BHEA 3ZSCA 4OJ5A 4XR6A 1WXRA 2V5IA 3PETA 4OJLA 1EZGA 1KTWA 3SQVA 1O8DA 2O6WA 3GRHA 2BM5A 3AK5A 1KCDA 1TYWA 3JURA 1QQ1A 4YELA 1QJVA 1K8FA 2BM6A 2QYUA 3PSSA 1KQ5A 1JRGA 2PYGA 2XT2A 4OJPA 5C1EA 4XM3A 3LJYA 2O0WA 4XKWA 1IB4A 4XL9A 2INVA 4U49A 4MR0A 3EQNA 4OJOA 3ZPPA 2QZAA 3WWGA 1LM1A 2QY1A 2BM4A 2PYHA 1TYXA 4URRA 1O8GA 1O88A 1GQ8A 2XTWA 3LMWA 4V02C 2NT9A 2XTYA 4XLHA 3P4GA 4C2LA 1XG2A 2NT6A 1O8IA 3VMWA 1IA5A 3KRGA 2XC1A 5JMCB 3N90A 1RMGA 3EQOA 4YEIA 1TYVA 2F3LA 4XLCA
chains in the Genus database with same CATH topology
4W8QA 4XORA 1PE9A 1AIRA 1O8JA 1O8LA 2UVFA 2NSTA 2VJJA 4Z05A 2QX3A 1OOCA 4I84A 4XOPA 1X0CA 1OFMA 5AMVA 1CZFA 4XLAA 2NTQA 3B4NA 2O04A 1PLUA 1WMRA 1OGOX 4XKVA 4AVZA 4W8TA 1K5CA 2O17A 2IQ7A 3VSVA 1PXZA 3GQ9A 2UVEA 2O1DA 3SUCA 3FY3A 4Z06A 1RU4A 2Z8GA 2INUA 1IDJA 3GQ8A 3VSUA 4OJ6A 4PMHA 1O8HA 2NTPA 2NSPA 1DBGA 2VJIA 1EE6A 3GQAA 4W8SA 4XNFA 4YEJA 4HWVA 2X6YA 4MXNA 4YZ0A 2O0VA 4U4BA 4NK8A 3B90A 1IDKA 4OZYA 2VBKA 2EWEA 2VBEA 4XLEA 4XQFA 3VMVA 1H80A 4OZZA 2NTBA 1O8KA 1DBOA 1HG8A 4YZQA 4Z03A 3VSTA 2QXZA 4W8RA 2BSPA 1KCCA 2ODLA 3UW0A 5C1CA 1QCXA 4XN0A 2VBMA 4XONA 2NZMA 2X6WA 4XMYA 3B8YA 1NHCA 1RWRA 4XOTA 1O8FA 4EW9A 2PECA 1BN8A 4YZAA 1OGMX 2X85A 4YZXA 4NK6A 1O8MA 4XN3A 3GQ7A 1OFLA 1VBLA 1O8EA 2X3HA 2X6XA 1JTAA 3T9GA 1BHEA 3ZSCA 4OJ5A 4XR6A 4OJLA 1KTWA 1O8DA 3GRHA 1KCDA 3JURA 4YELA 1QJVA 1JRGA 2PYGA 4OJPA 5C1EA 4XM3A 4XKWA 2O0WA 1IB4A 4XL9A 2INVA 4U49A 4MR0A 3EQNA 4OJOA 3ZPPA 3WWGA 2QY1A 2PYHA 4URRA 1O8GA 1O88A 1GQ8A 3LMWA 2NT9A 4XLHA 4C2LA 1XG2A 2NT6A 1O8IA 3VMWA 1IA5A 3KRGA 1RMGA 3EQOA 4XLFA 4XLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8Q A;  4XOR A;  1PE9 A;  1AIR A;  1O8J A;  1O8L A;  2UVF A;  2NST A;  2VJJ A;  4Z05 A;  2QX3 A;  1OOC A;  4I84 A;  4XOP A;  1X0C A;  1OFM A;  5AMV A;  1CZF A;  4XLA A;  2NTQ A;  3B4N A;  2O04 A;  1PLU A;  1WMR A;  1OGO X;  4XKV A;  4AVZ A;  4W8T A;  1K5C A;  2O17 A;  2IQ7 A;  3VSV A;  1PXZ A;  3GQ9 A;  2UVE A;  2O1D A;  3SUC A;  3FY3 A;  4Z06 A;  1RU4 A;  2Z8G A;  2INU A;  1IDJ A;  3GQ8 A;  3VSU A;  4OJ6 A;  4PMH A;  1O8H A;  2NTP A;  2NSP A;  1DBG A;  2VJI A;  1EE6 A;  3GQA A;  4W8S A;  4XNF A;  4YEJ A;  4HWV A;  2X6Y A;  4MXN A;  4YZ0 A;  2O0V A;  4U4B A;  4NK8 A;  3B90 A;  1IDK A;  4OZY A;  2VBK A;  2EWE A;  2VBE A;  4XLE A;  4XQF A;  3VMV A;  1H80 A;  4OZZ A;  2NTB A;  1O8K A;  1DBO A;  1HG8 A;  4YZQ A;  4Z03 A;  3VST A;  2QXZ A;  4W8R A;  2BSP A;  1KCC A;  2ODL A;  3UW0 A;  5C1C A;  1QCX A;  4XN0 A;  2VBM A;  4XON A;  2NZM A;  2X6W A;  4XMY A;  3B8Y A;  1NHC A;  1RWR A;  4XOT A;  1O8F A;  4EW9 A;  2PEC A;  1BN8 A;  4YZA A;  1OGM X;  2X85 A;  4YZX A;  4NK6 A;  1O8M A;  4XN3 A;  3GQ7 A;  1OFL A;  1VBL A;  1O8E A;  2X3H A;  2X6X A;  1JTA A;  3T9G A;  1BHE A;  3ZSC A;  4OJ5 A;  4XR6 A;  4OJL A;  1KTW A;  1O8D A;  3GRH A;  1KCD A;  3JUR A;  4YEL A;  1QJV A;  1JRG A;  2PYG A;  4OJP A;  5C1E A;  4XM3 A;  4XKW A;  2O0W A;  1IB4 A;  4XL9 A;  2INV A;  4U49 A;  4MR0 A;  3EQN A;  4OJO A;  3ZPP A;  3WWG A;  2QY1 A;  2PYH A;  4URR A;  1O8G A;  1O88 A;  1GQ8 A;  3LMW A;  2NT9 A;  4XLH A;  4C2L A;  1XG2 A;  2NT6 A;  1O8I A;  3VMW A;  1IA5 A;  3KRG A;  1RMG A;  3EQO A;  4XLF A;  4XLC A; 
#chains in the Genus database with same CATH topology
 4W8Q A;  4XOR A;  1PE9 A;  1AIR A;  1O8J A;  1O8L A;  2G0Y A;  4OM9 A;  2UVF A;  2NST A;  1HF2 A;  2VJJ A;  3H09 A;  4Z05 A;  2QX3 A;  1OOC A;  4YDT A;  4I84 A;  4XOP A;  1X0C A;  3PSZ A;  3RIQ A;  3TH0 A;  1DAB A;  1OFM A;  2VFM A;  1CZF A;  5AMV A;  1QA2 A;  1LLW A;  4OPW A;  4XLA A;  2NTQ A;  3B4N A;  4JRA C;  5DNS A;  2O04 A;  1PLU A;  1WMR A;  1OGO X;  3SZE A;  4XKV A;  3ML3 A;  4AVZ A;  1EA0 A;  4W8T A;  1K5C A;  2O17 A;  2IQ7 A;  3VSV A;  5JLV C;  2J8I A;  2W7Z A;  1PXZ A;  3GQ9 A;  2UVE A;  2O1D A;  2XTX A;  4KH3 A;  3SUC A;  3FY3 A;  2VFO A;  4Z06 A;  1RU4 A;  2VFQ A;  2INU A;  1IDJ A;  2Z8G A;  3GQ8 A;  1TSP A;  3VSU A;  4OJ6 A;  4PMH A;  1O8H A;  2NTP A;  2NSP A;  1DBG A;  2VJI A;  1EE6 A;  3GQA A;  4W8S A;  4XNF A;  1OFE A;  2J8K A;  3SYJ A;  3BH6 B;  4YEJ A;  4HWV A;  4YFO A;  2X6Y A;  4XLF A;  1QA3 A;  4MXN A;  4YZ0 A;  2O0V A;  4U4B A;  4NK8 A;  3B90 A;  3BH7 B;  1IDK A;  4OZY A;  2VBK A;  1L1I A;  2EWE A;  2VBE A;  4XLE A;  2BM7 A;  4XQF A;  3VMV A;  1H80 A;  4OZZ A;  2NTB A;  1O8K A;  1DBO A;  1HG8 A;  2VFP A;  4YZQ A;  4Z03 A;  1K4Z A;  3VST A;  2QXZ A;  4YCQ A;  3NB2 A;  4W8R A;  2BSP A;  1LLZ A;  2ODL A;  2VFN A;  3UW0 A;  5C1C A;  2B0R A;  1KCC A;  1QA1 A;  1QRB A;  1QCX A;  4XN0 A;  3N6Z A;  2VBM A;  1TYU A;  4YC5 A;  2IOU G;  2NZM A;  4XON A;  2X6W A;  4XMY A;  3SY2 A;  3B8Y A;  1NHC A;  3NAW A;  1RWR A;  4XOT A;  1O8F A;  4EW9 A;  2PEC A;  1BN8 A;  4YZA A;  1OGM X;  2X85 A;  3DU1 X;  4YZX A;  4NK6 A;  1O8M A;  1QRC A;  3JX8 A;  2BX6 A;  4XN3 A;  2XT4 A;  3GQ7 A;  1OFD A;  1OFL A;  1VBL A;  1O8E A;  2X3H A;  2X6X A;  2YUH A;  1JTA A;  1CLW A;  3LYC A;  3T9G A;  1BHE A;  3ZSC A;  4OJ5 A;  4XR6 A;  1WXR A;  2V5I A;  3PET A;  4OJL A;  1EZG A;  1KTW A;  3SQV A;  1O8D A;  2O6W A;  3GRH A;  2BM5 A;  3AK5 A;  1KCD A;  1TYW A;  3JUR A;  1QQ1 A;  4YEL A;  1QJV A;  1K8F A;  2BM6 A;  2QYU A;  3PSS A;  1KQ5 A;  1JRG A;  2PYG A;  2XT2 A;  4OJP A;  5C1E A;  4XM3 A;  3LJY A;  2O0W A;  4XKW A;  1IB4 A;  4XL9 A;  2INV A;  4U49 A;  4MR0 A;  3EQN A;  4OJO A;  3ZPP A;  2QZA A;  3WWG A;  1LM1 A;  2QY1 A;  2BM4 A;  2PYH A;  1TYX A;  4URR A;  1O8G A;  1O88 A;  1GQ8 A;  2XTW A;  3LMW A;  4V02 C;  2NT9 A;  2XTY A;  4XLH A;  3P4G A;  4C2L A;  1XG2 A;  2NT6 A;  1O8I A;  3VMW A;  1IA5 A;  3KRG A;  2XC1 A;  5JMC B;  3N90 A;  1RMG A;  3EQO A;  4YEI A;  1TYV A;  2F3L A;  4XLC A; 
#chains in the Genus database with same CATH homology
 4W8Q A;  4XOR A;  1PE9 A;  1AIR A;  1O8J A;  1O8L A;  2UVF A;  2NST A;  2VJJ A;  4Z05 A;  2QX3 A;  1OOC A;  4I84 A;  4XOP A;  1X0C A;  1OFM A;  5AMV A;  1CZF A;  4XLA A;  2NTQ A;  3B4N A;  2O04 A;  1PLU A;  1WMR A;  1OGO X;  4XKV A;  4AVZ A;  4W8T A;  1K5C A;  2O17 A;  2IQ7 A;  3VSV A;  1PXZ A;  3GQ9 A;  2UVE A;  2O1D A;  3SUC A;  3FY3 A;  4Z06 A;  1RU4 A;  2Z8G A;  2INU A;  1IDJ A;  3GQ8 A;  3VSU A;  4OJ6 A;  4PMH A;  1O8H A;  2NTP A;  2NSP A;  1DBG A;  2VJI A;  1EE6 A;  3GQA A;  4W8S A;  4XNF A;  4YEJ A;  4HWV A;  2X6Y A;  4MXN A;  4YZ0 A;  2O0V A;  4U4B A;  4NK8 A;  3B90 A;  1IDK A;  4OZY A;  2VBK A;  2EWE A;  2VBE A;  4XLE A;  4XQF A;  3VMV A;  1H80 A;  4OZZ A;  2NTB A;  1O8K A;  1DBO A;  1HG8 A;  4YZQ A;  4Z03 A;  3VST A;  2QXZ A;  4W8R A;  2BSP A;  1KCC A;  2ODL A;  3UW0 A;  5C1C A;  1QCX A;  4XN0 A;  2VBM A;  4XON A;  2NZM A;  2X6W A;  4XMY A;  3B8Y A;  1NHC A;  1RWR A;  4XOT A;  1O8F A;  4EW9 A;  2PEC A;  1BN8 A;  4YZA A;  1OGM X;  2X85 A;  4YZX A;  4NK6 A;  1O8M A;  4XN3 A;  3GQ7 A;  1OFL A;  1VBL A;  1O8E A;  2X3H A;  2X6X A;  1JTA A;  3T9G A;  1BHE A;  3ZSC A;  4OJ5 A;  4XR6 A;  4OJL A;  1KTW A;  1O8D A;  3GRH A;  1KCD A;  3JUR A;  4YEL A;  1QJV A;  1JRG A;  2PYG A;  4OJP A;  5C1E A;  4XM3 A;  4XKW A;  2O0W A;  1IB4 A;  4XL9 A;  2INV A;  4U49 A;  4MR0 A;  3EQN A;  4OJO A;  3ZPP A;  3WWG A;  2QY1 A;  2PYH A;  4URR A;  1O8G A;  1O88 A;  1GQ8 A;  3LMW A;  2NT9 A;  4XLH A;  4C2L A;  1XG2 A;  2NT6 A;  1O8I A;  3VMW A;  1IA5 A;  3KRG A;  1RMG A;  3EQO A;  4XLF A;  4XLC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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