5CE9A

Structure of tyrosinase from walnut (juglans regia)
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
339
structure length
339
Chain Sequence
DPVSAPELTLCSEADLPAGALPVNCCPPTSKKIKDFVLPSQNTPLRVRPAAHLVDNDYIAKYNKGIELMKSLPADDPRSFTQQANVHCAYCDGAYTQVGFPDLSLQIHECWLFFPFHRYYVYFFEKILGKLIGDPTFALPFWNWDSPPGMQLPSLYAVSNSAIYDPLRNANHQPPTIIDLDYGETSESTTTTDQVPSNLKIMYRQMVSGAKNPTLFFGSPYRAGDEPDPGAGTIESTPHNNIHLWTGDDTQPNIENMGNFYSAGRDPIFFAHHSNVDRMWTIWKTLGGKRKDITDPDWLNSSFFFYDENADPVRVKVKDCVDNTKLRYVYQDVEIPWLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Polyphenol oxidase
publication title The Structure of a Plant Tyrosinase from Walnut Leaves Reveals the Importance of """"Substrate-Guiding Residues"""" for Enzymatic Specificity.
pubmed doi rcsb
total genus 112
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00264 Tyrosinase Common central domain of tyrosinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1280.10 Mainly Alpha Orthogonal Bundle di-copper center containing domain from catechol oxidase Di-copper center containing domain from catechol oxidase 5ce9A00
1LL1A 4Z0YA 1LNLA 4D87A 3HHSB 5I3AA 4P6TA 3NTMA 2ZMYA 1WX2A 4J3RA 2ZMZA 4Z0ZA 1HCYA 3AWWA 3GWJA 4J3PA 5I3BA 4OUAA 3NQ0A 4HD4A 1OXYA 2ZMXA 1JS8A 1BT1A 3HHSA 3WJMB 1BT3A 5I38A 1WX4A 4HD6A 4P6SA 4Z10A 1BT2A 4YZWA 3NPYA 5CE9A 3AWVA 3WKYA 3AWZA 1WX5A 3AWXA 2Y9WA 2AHKA 3NQ1A 3AWUA 2ZWEA 2P3XA 1BUGA 4P6RA 3AWYA 3WJMA 2ZWDA 2ZWFA 2ZWGA 3QJOA 1NOLA 1LLAA 4J3QA 4J6TA 4L37B 3W6WA 4OUAB 2AHLA 1WXCA 3W6QA 3AX0A 4HD7A 1HC1A 2Y9XA 3AWSA 3AWTA 3NQ5A 4L37A 4J6VA 3NM8A 4J6UA
chains in the Genus database with same CATH superfamily
1LL1A 4Z0YA 1LNLA 4D87A 3HHSB 5I3AA 4P6TA 3NTMA 2ZMYA 1WX2A 4J3RA 2ZMZA 4Z0ZA 1HCYA 3AWWA 3GWJA 4J3PA 5I3BA 4OUAA 3NQ0A 4HD4A 1OXYA 2ZMXA 1JS8A 1BT1A 3HHSA 3WJMB 1BT3A 5I38A 1WX4A 4HD6A 4P6SA 4Z10A 1BT2A 4YZWA 3NPYA 5CE9A 3AWVA 3WKYA 3AWZA 1WX5A 3AWXA 2Y9WA 2AHKA 3NQ1A 3AWUA 2ZWEA 2P3XA 1BUGA 4P6RA 3AWYA 3WJMA 2ZWDA 2ZWFA 2ZWGA 3QJOA 1NOLA 1LLAA 4J3QA 4J6TA 4L37B 3W6WA 4OUAB 2AHLA 1WXCA 3W6QA 3AX0A 4HD7A 1HC1A 2Y9XA 3AWSA 3AWTA 3NQ5A 4L37A 4J6VA 3NM8A 4J6UA
chains in the Genus database with same CATH topology
1LL1A 4Z0YA 1LNLA 4D87A 3HHSB 5I3AA 4P6TA 3NTMA 2ZMYA 1WX2A 4J3RA 2ZMZA 4Z0ZA 1HCYA 3AWWA 3GWJA 4J3PA 5I3BA 4OUAA 3NQ0A 4HD4A 1OXYA 2ZMXA 1JS8A 1BT1A 3HHSA 3WJMB 1BT3A 5I38A 1WX4A 4HD6A 4P6SA 4Z10A 1BT2A 4YZWA 3NPYA 5CE9A 3AWVA 3WKYA 3AWZA 1WX5A 3AWXA 2Y9WA 2AHKA 3NQ1A 3AWUA 2ZWEA 2P3XA 1BUGA 4P6RA 3AWYA 3WJMA 2ZWDA 2ZWFA 2ZWGA 3QJOA 1NOLA 1LLAA 4J3QA 4J6TA 4L37B 3W6WA 4OUAB 2AHLA 1WXCA 3W6QA 3AX0A 4HD7A 1HC1A 2Y9XA 3AWSA 3AWTA 3NQ5A 4L37A 4J6VA 3NM8A 4J6UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LL1 A;  4Z0Y A;  1LNL A;  4D87 A;  3HHS B;  5I3A A;  4P6T A;  3NTM A;  2ZMY A;  1WX2 A;  4J3R A;  2ZMZ A;  4Z0Z A;  1HCY A;  3AWW A;  3GWJ A;  4J3P A;  5I3B A;  4OUA A;  3NQ0 A;  4HD4 A;  1OXY A;  2ZMX A;  1JS8 A;  1BT1 A;  3HHS A;  3WJM B;  1BT3 A;  5I38 A;  1WX4 A;  4HD6 A;  4P6S A;  4Z10 A;  1BT2 A;  4YZW A;  3NPY A;  5CE9 A;  3AWV A;  3WKY A;  3AWZ A;  1WX5 A;  3AWX A;  2Y9W A;  2AHK A;  3NQ1 A;  3AWU A;  2ZWE A;  2P3X A;  1BUG A;  4P6R A;  3AWY A;  3WJM A;  2ZWD A;  2ZWF A;  2ZWG A;  3QJO A;  1NOL A;  1LLA A;  4J3Q A;  4J6T A;  4L37 B;  3W6W A;  4OUA B;  2AHL A;  1WXC A;  3W6Q A;  3AX0 A;  4HD7 A;  1HC1 A;  2Y9X A;  3AWS A;  3AWT A;  3NQ5 A;  4L37 A;  4J6V A;  3NM8 A;  4J6U A; 
#chains in the Genus database with same CATH topology
 1LL1 A;  4Z0Y A;  1LNL A;  4D87 A;  3HHS B;  5I3A A;  4P6T A;  3NTM A;  2ZMY A;  1WX2 A;  4J3R A;  2ZMZ A;  4Z0Z A;  1HCY A;  3AWW A;  3GWJ A;  4J3P A;  5I3B A;  4OUA A;  3NQ0 A;  4HD4 A;  1OXY A;  2ZMX A;  1JS8 A;  1BT1 A;  3HHS A;  3WJM B;  1BT3 A;  5I38 A;  1WX4 A;  4HD6 A;  4P6S A;  4Z10 A;  1BT2 A;  4YZW A;  3NPY A;  5CE9 A;  3AWV A;  3WKY A;  3AWZ A;  1WX5 A;  3AWX A;  2Y9W A;  2AHK A;  3NQ1 A;  3AWU A;  2ZWE A;  2P3X A;  1BUG A;  4P6R A;  3AWY A;  3WJM A;  2ZWD A;  2ZWF A;  2ZWG A;  3QJO A;  1NOL A;  1LLA A;  4J3Q A;  4J6T A;  4L37 B;  3W6W A;  4OUA B;  2AHL A;  1WXC A;  3W6Q A;  3AX0 A;  4HD7 A;  1HC1 A;  2Y9X A;  3AWS A;  3AWT A;  3NQ5 A;  4L37 A;  4J6V A;  3NM8 A;  4J6U A; 
#chains in the Genus database with same CATH homology
 1LL1 A;  4Z0Y A;  1LNL A;  4D87 A;  3HHS B;  5I3A A;  4P6T A;  3NTM A;  2ZMY A;  1WX2 A;  4J3R A;  2ZMZ A;  4Z0Z A;  1HCY A;  3AWW A;  3GWJ A;  4J3P A;  5I3B A;  4OUA A;  3NQ0 A;  4HD4 A;  1OXY A;  2ZMX A;  1JS8 A;  1BT1 A;  3HHS A;  3WJM B;  1BT3 A;  5I38 A;  1WX4 A;  4HD6 A;  4P6S A;  4Z10 A;  1BT2 A;  4YZW A;  3NPY A;  5CE9 A;  3AWV A;  3WKY A;  3AWZ A;  1WX5 A;  3AWX A;  2Y9W A;  2AHK A;  3NQ1 A;  3AWU A;  2ZWE A;  2P3X A;  1BUG A;  4P6R A;  3AWY A;  3WJM A;  2ZWD A;  2ZWF A;  2ZWG A;  3QJO A;  1NOL A;  1LLA A;  4J3Q A;  4J6T A;  4L37 B;  3W6W A;  4OUA B;  2AHL A;  1WXC A;  3W6Q A;  3AX0 A;  4HD7 A;  1HC1 A;  2Y9X A;  3AWS A;  3AWT A;  3NQ5 A;  4L37 A;  4J6V A;  3NM8 A;  4J6U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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