5CEGB

X-ray structure of toxin/anti-toxin complex from mesorhizobium opportunistum
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
103
structure length
103
Chain Sequence
MAVRLVWSPTAKADLIDIYVMIGSENIRAADRYYDQLEARALQLADQPRMGVRRPDIRPSARMLVEAPFVLLYETVPDTDDGPVEWVEIVRVVDGRRDLNRLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Addiction module antidote protein, CopG/Arc/MetJ family
publication title Evolving New Protein-Protein Interaction Specificity through Promiscuous Intermediates.
pubmed doi rcsb
source organism Mesorhizobium opportunistum (strain lmg 24607 / hambi 3007 / wsm2075)
total genus 35
structure length 103
sequence length 103
chains with identical sequence D
ec nomenclature
pdb deposition date 2015-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF05016 ParE_toxin ParE toxin of type II toxin-antitoxin system, parDE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 5cegB00
5CW7B 1WMIA 4NRNA 2KC8A 4MCXB 4Q2UB 4FXHA 5IWHA 3KXEA 4MCTB 2A6QE 5CZEB 1Z8MA 4FXED 3BPQB 3G5OB 5CZFC 2OTRA 4PX8A 4LTTA 2KC9A 2KHEA 3OEIC 4ML0B 5CEGB 4LS4A 2A6RA 4FXIA 4MMGA 4MMJA 4YY3Y 4ML2A 2A6SA 4LSYA 5IXLA
chains in the Genus database with same CATH superfamily
5CW7B 1WMIA 3AO9A 4NRNA 4FBDA 2DFXE 2KC8A 4MCXB 4Q2UB 4FXHA 5IWHA 2DJHA 2PD0A 3KXEA 2A6QE 4MCTB 5CZEB 1Z8MA 4FXED 3BPQB 3G5OB 5CZFC 2OTRA 4PX8A 1XQBA 4LTTA 2KC9A 2KHEA 2FHZB 3OEIC 4ML0B 5CEGB 4LS4A 2A6RA 2A8KA 4FXIA 4MMGA 4MMJA 3HI2B 4YY3Y 4ML2A 2A6SA 3VJ7A 4LSYA 5IXLA
chains in the Genus database with same CATH topology
5CW7B 1WMIA 4NRNA 2KC8A 4MCXB 4Q2UB 4FXHA 5IWHA 3KXEA 4MCTB 2A6QE 5CZEB 1Z8MA 4FXED 3BPQB 3G5OB 5CZFC 2OTRA 4PX8A 4LTTA 2KC9A 2KHEA 3OEIC 4ML0B 5CEGB 4LS4A 2A6RA 4FXIA 4MMGA 4MMJA 4YY3Y 4ML2A 2A6SA 4LSYA 5IXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CW7 B;  1WMI A;  4NRN A;  2KC8 A;  4MCX B;  4Q2U B;  4FXH A;  5IWH A;  3KXE A;  4MCT B;  2A6Q E;  5CZE B;  1Z8M A;  4FXE D;  3BPQ B;  3G5O B;  5CZF C;  2OTR A;  4PX8 A;  4LTT A;  2KC9 A;  2KHE A;  3OEI C;  4ML0 B;  5CEG B;  4LS4 A;  2A6R A;  4FXI A;  4MMG A;  4MMJ A;  4YY3 Y;  4ML2 A;  2A6S A;  4LSY A;  5IXL A; 
#chains in the Genus database with same CATH topology
 5CW7 B;  1WMI A;  3AO9 A;  4NRN A;  4FBD A;  2DFX E;  2KC8 A;  4MCX B;  4Q2U B;  4FXH A;  5IWH A;  2DJH A;  2PD0 A;  3KXE A;  2A6Q E;  4MCT B;  5CZE B;  1Z8M A;  4FXE D;  3BPQ B;  3G5O B;  5CZF C;  2OTR A;  4PX8 A;  1XQB A;  4LTT A;  2KC9 A;  2KHE A;  2FHZ B;  3OEI C;  4ML0 B;  5CEG B;  4LS4 A;  2A6R A;  2A8K A;  4FXI A;  4MMG A;  4MMJ A;  3HI2 B;  4YY3 Y;  4ML2 A;  2A6S A;  3VJ7 A;  4LSY A;  5IXL A; 
#chains in the Genus database with same CATH homology
 5CW7 B;  1WMI A;  4NRN A;  2KC8 A;  4MCX B;  4Q2U B;  4FXH A;  5IWH A;  3KXE A;  4MCT B;  2A6Q E;  5CZE B;  1Z8M A;  4FXE D;  3BPQ B;  3G5O B;  5CZF C;  2OTR A;  4PX8 A;  4LTT A;  2KC9 A;  2KHE A;  3OEI C;  4ML0 B;  5CEG B;  4LS4 A;  2A6R A;  4FXI A;  4MMG A;  4MMJ A;  4YY3 Y;  4ML2 A;  2A6S A;  4LSY A;  5IXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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