5CFYA

Crystal structure of gltph r397a in complex with na+ and l-asp
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
Knots found
sequence length
411
structure length
411
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPKQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGATMVNVTGDLTGTAIVAKTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords 425aa long hypothetical proton glutamate symport protein
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
source organism Pyrococcus horikoshii (strain atcc 700860 / dsm 12428 / jcm 9974 / nbrc 100139 /
total genus 134
structure length 411
sequence length 411
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2015-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporter 5cfyA00
3V8FA 4P1AA 3KBCA 4OYEA 5CFYA 2NWWA 4OYFA 5E9SA 5DWYA 2NWXA 4P3JA 4P19A 4KY0A 2NWLA 1XFHA
chains in the Genus database with same CATH superfamily
3V8FA 4P1AA 3KBCA 4OYEA 5CFYA 2NWWA 4OYFA 5E9SA 5DWYA 2NWXA 4P3JA 4P19A 4KY0A 2NWLA 1XFHA
chains in the Genus database with same CATH topology
3V8FA 4P1AA 3KBCA 4OYEA 5CFYA 2NWWA 4OYFA 5E9SA 5DWYA 2NWXA 4P3JA 4P19A 4KY0A 2NWLA 1XFHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V8F A;  4P1A A;  3KBC A;  4OYE A;  5CFY A;  2NWW A;  4OYF A;  5E9S A;  5DWY A;  2NWX A;  4P3J A;  4P19 A;  4KY0 A;  2NWL A;  1XFH A; 
#chains in the Genus database with same CATH topology
 3V8F A;  4P1A A;  3KBC A;  4OYE A;  5CFY A;  2NWW A;  4OYF A;  5E9S A;  5DWY A;  2NWX A;  4P3J A;  4P19 A;  4KY0 A;  2NWL A;  1XFH A; 
#chains in the Genus database with same CATH homology
 3V8F A;  4P1A A;  3KBC A;  4OYE A;  5CFY A;  2NWW A;  4OYF A;  5E9S A;  5DWY A;  2NWX A;  4P3J A;  4P19 A;  4KY0 A;  2NWL A;  1XFH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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