5CMOA

Crystal structure of holo-[acyl-carrier-protein] synthase (acps) from neisseria meningitidis
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
125
structure length
125
Chain Sequence
MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGKPVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQGISRVSLSMSDEEDTVLAFVVAEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Holo-[acyl-carrier-protein] synthase
publication title Crystal structure of holo-[acyl-carrier-protein] synthase (AcpS) from Neisseria meningitidis
rcsb
source organism Neisseria meningitidis serogroup c / serotype 2a (strain atcc 700532 / dsm 15464
total genus 36
structure length 125
sequence length 125
chains with identical sequence B, C
ec nomenclature ec 2.7.8.7: Holo-[acyl-carrier-protein] synthase.
pdb deposition date 2015-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01648 ACPS 4'-phosphopantetheinyl transferase superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.20 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A 4'-phosphopantetheinyl transferase domain 5cmoA00
1F7TA 2WDSA 3NE1A 2C43A 4HC6A 5CXDA 2QG8A 2WASA 2WDYA 4DXEA 2BYDA 2WASB 2WATA 3H7QA 1FTHA 3HQJA 3HYKA 2JCAA 5CMOA 3NFDA 4MRTA 3GWMA 1QR0A 2CG5A 3NE9A 2JBZA 2WDOA 3QMNA 2BDDA 1FTEA 1F7LA 4JM7A 3NE3B 1FTFA 1F80A
chains in the Genus database with same CATH superfamily
1F7TA 2WDSA 4IOCP 1VQMR 3CC2R 1I4JA 3NE1A 4HC6A 1QVGQ 1VQ5R 1K9MS 4IOAP 3J7YT 1VQ4R 4WFBP 3H7QA 3PIOP 3HYKA 5DM6P 5CMOA 4WF9P 5GAHT 5GAET 1YI2R 3NE9A 4JM7A 5GADT 1K73S 1BXEA 1F80A 1KC8S 4V19W 4UY8S 5GAGT 3G71R 3CXCQ 3G4SR 2ZJRP 2C43A 1VQPR 2WDYA 2WASB 1KD1S 2OTLR 1VQLR 2QEXR 5MLCU 4WCEP 1YJNR 3GWMA 2D0OA 2ZJPP 2CG5A 1Q81S 5HL7P 2WDOA 3I56R 3CD6R 1W2BQ 1FTEA 1F7LA 1M90S 5JVGP 1JJ2Q 5H1SU 1YJWR 5DM7P 3G6ER 1Q86S 5CXDA 4U67P 2WASA 3PIPP 3CPWQ 1VQ7R 3CCVR 1YITR 2WATA 4IO9P 2JCAA 3NFDA 3I55R 3CC7R 2QA4R 3CC4R 1QR0A 1YIJR 1VQ6R 3CCRR 1N8RS 1VQNR 2BDDA 1Q7YS 1Q82S 1YJ9R 3CCUR 1QVFQ 1FTFA 2ZJQP 2D0PA 3CMER 3CCSR 3J7ZS 3OW2Q 1M1KS 2QG8A 1S72R 4DXEA 1K8AS 5JVHP 4WFNP 2BYDA 1FTHA 3HQJA 1VQ9R 3CCJR 3DLLP 3CMAR 1VQ8R 4MRTA 1VQKR 3CF5P 3CCLR 1VQOR 1NJIS 1NBWA 2JBZA 3QMNA 3CCER 3CCMR 4WFAP 3NE3B 1YHQR 2OTJR 3CCQR 1KQSQ
chains in the Genus database with same CATH topology
1F7TA 2WDSA 3NE1A 2C43A 4HC6A 5CXDA 2QG8A 2WASA 2WDYA 4DXEA 2BYDA 2WASB 2WATA 3H7QA 1FTHA 3HQJA 3HYKA 2JCAA 5CMOA 3NFDA 4MRTA 3GWMA 1QR0A 2CG5A 3NE9A 2JBZA 2WDOA 3QMNA 2BDDA 1FTEA 1F7LA 4JM7A 3NE3B 1FTFA 1F80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F7T A;  2WDS A;  3NE1 A;  2C43 A;  4HC6 A;  5CXD A;  2QG8 A;  2WAS A;  2WDY A;  4DXE A;  2BYD A;  2WAS B;  2WAT A;  3H7Q A;  1FTH A;  3HQJ A;  3HYK A;  2JCA A;  5CMO A;  3NFD A;  4MRT A;  3GWM A;  1QR0 A;  2CG5 A;  3NE9 A;  2JBZ A;  2WDO A;  3QMN A;  2BDD A;  1FTE A;  1F7L A;  4JM7 A;  3NE3 B;  1FTF A;  1F80 A; 
#chains in the Genus database with same CATH topology
 1F7T A;  2WDS A;  4IOC P;  1VQM R;  3CC2 R;  1I4J A;  3NE1 A;  4HC6 A;  1QVG Q;  1VQ5 R;  1K9M S;  4IOA P;  3J7Y T;  1VQ4 R;  4WFB P;  3H7Q A;  3PIO P;  3HYK A;  5DM6 P;  5CMO A;  4WF9 P;  5GAH T;  5GAE T;  1YI2 R;  3NE9 A;  4JM7 A;  5GAD T;  1K73 S;  1BXE A;  1F80 A;  1KC8 S;  4V19 W;  4UY8 S;  5GAG T;  3G71 R;  3CXC Q;  3G4S R;  2ZJR P;  2C43 A;  1VQP R;  2WDY A;  2WAS B;  1KD1 S;  2OTL R;  1VQL R;  2QEX R;  5MLC U;  4WCE P;  1YJN R;  3GWM A;  2D0O A;  2ZJP P;  2CG5 A;  1Q81 S;  5HL7 P;  2WDO A;  3I56 R;  3CD6 R;  1W2B Q;  1FTE A;  1F7L A;  1M90 S;  5JVG P;  1JJ2 Q;  5H1S U;  1YJW R;  5DM7 P;  3G6E R;  1Q86 S;  5CXD A;  4U67 P;  2WAS A;  3PIP P;  3CPW Q;  1VQ7 R;  3CCV R;  1YIT R;  2WAT A;  4IO9 P;  2JCA A;  3NFD A;  3I55 R;  3CC7 R;  2QA4 R;  3CC4 R;  1QR0 A;  1YIJ R;  1VQ6 R;  3CCR R;  1N8R S;  1VQN R;  2BDD A;  1Q7Y S;  1Q82 S;  1YJ9 R;  3CCU R;  1QVF Q;  1FTF A;  2ZJQ P;  2D0P A;  3CME R;  3CCS R;  3J7Z S;  3OW2 Q;  1M1K S;  2QG8 A;  1S72 R;  4DXE A;  1K8A S;  5JVH P;  4WFN P;  2BYD A;  1FTH A;  3HQJ A;  1VQ9 R;  3CCJ R;  3DLL P;  3CMA R;  1VQ8 R;  4MRT A;  1VQK R;  3CF5 P;  3CCL R;  1VQO R;  1NJI S;  1NBW A;  2JBZ A;  3QMN A;  3CCE R;  3CCM R;  4WFA P;  3NE3 B;  1YHQ R;  2OTJ R;  3CCQ R;  1KQS Q; 
#chains in the Genus database with same CATH homology
 1F7T A;  2WDS A;  3NE1 A;  2C43 A;  4HC6 A;  5CXD A;  2QG8 A;  2WAS A;  2WDY A;  4DXE A;  2BYD A;  2WAS B;  2WAT A;  3H7Q A;  1FTH A;  3HQJ A;  3HYK A;  2JCA A;  5CMO A;  3NFD A;  4MRT A;  3GWM A;  1QR0 A;  2CG5 A;  3NE9 A;  2JBZ A;  2WDO A;  3QMN A;  2BDD A;  1FTE A;  1F7L A;  4JM7 A;  3NE3 B;  1FTF A;  1F80 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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