5CS2A

Crystal structure of plasmodium falciparum diadenosine triphosphate hydrolase in complex with cyclomarin a
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
198
structure length
147
Chain Sequence
EKYKNILEKLEWYKNKSSEKYEFGIYEIDKREVFITTKYSYGFVNNKPLLPGHILLTTLKKKKHYNDLDIEEIIDINLLCNFMCYIMGNLFNTTDFSIAIQDGKEAGQTVDHVHIHIIPRKINDIRSIEQMEEEANLIKSYINEKFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Histidine triad protein
publication title Gift from Nature: Cyclomarin A Kills Mycobacteria and Malaria Parasites by Distinct Modes of Action.
pubmed doi rcsb
source organism Plasmodium falciparum (isolate 3d7)
total genus 45
structure length 147
sequence length 198
ec nomenclature
pdb deposition date 2015-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 5cs2A00
4INIA 1HXPA 5IPEA 1EMSA 4QDVA 3WO5A 3O1CA 3LB5A 4ZKVA 5CS2A 2Q4LA 4ZKLA 1XMLA 4NDGA 3SP4A 5EMTA 3BLAA 5ED3A 5ED6A 3OXKA 5I2EA 1ST4A 4QDEA 3RHNA 3KSVA 1FITA 2H39A 4INCA 3ANOA 1Y23A 1ST0A 3SPDA 5FITA 1GUQA 4QEBA 5IPDA 4NJXA 1FHIA 5IPCA 2FHIA 4NDFA 2Q4HA 4NJYA 4EQGA 4RHNA 1AV5A 4FITA 4XBAA 5IN3A 3SPLA 4ZGLA 3SZQA 3R6FA 3OJ7A 4NDIA 1HXQA 4NK0A 2OIKA 1KPCA 3N1TA 1KPEA 1ZWJA 3O0MA 4EQEA 1XMMA 3N1SA 3O1ZA 3OMFA 3I24A 6FITA 3NRDA 5I2FA 1KPFA 2EO4A 3P0TA 5IPBA 1Z84A 1VLRA 1GUPA 3IMIA 1KPBA 3L7XA 1KPAA 4NJZA 5RHNA 5BV3A 2FITA 4NDHA 1RZYA 4EQHA 3QGZA 3BL7A 3I4SA 6RHNA 3OHEA 4EGUA 4YKLB 3O1XA 3FITA 3TW2A 3BL9A
chains in the Genus database with same CATH superfamily
4INIA 1HXPA 1L9VA 5IPEA 1EMSA 2POFA 4QDVA 2R8FA 3WO5A 3O1CA 3LB5A 4ZKVA 5CS2A 2Q4LA 4ZKLA 1XMLA 4NDGA 3SP4A 5EMTA 3BLAA 5ED3A 5ED6A 3OXKA 5I2EA 1ST4A 4QDEA 4G0JA 3RHNA 3KSVA 2GU0A 1FITA 2H39A 4INCA 3ANOA 1Y23A 1ST0A 3SPDA 5FITA 1GUQA 4QEBA 5IPDA 2R7PA 4G0AA 4NJXA 1FHIA 5IPCA 2FHIA 4I5TA 4NDFA 2Q4HA 4NJYA 4EQGA 4RHNA 1AV5A 4FITA 4XBAA 5IN3A 2R7JA 4ZGLA 3SPLA 3SZQA 3R6FA 3OJ7A 4NDIA 1HXQA 4NK0A 2OIKA 1KPCA 4I5WA 3N1TA 1KPEA 1ZWJA 3O0MA 4EQEA 2LJWA 2R7CA 1XMMA 3N1SA 3O1ZA 3OMFA 3I24A 6FITA 3NRDA 5I2FA 1KPFA 2EO4A 3P0TA 5IPBA 1Z84A 4I5VA 1VLRA 1GUPA 3IMIA 1KPBA 3L7XA 1KPAA 4NJZA 5RHNA 5BV3A 2FITA 4NDHA 1RZYA 4EQHA 3QGZA 3BL7A 3I4SA 6RHNA 3OHEA 4EGUA 4YKLB 3O1XA 3FITA 3TW2A 3BL9A
chains in the Genus database with same CATH topology
4INIA 1HXPA 5IPEA 1EMSA 4QDVA 3WO5A 3O1CA 3LB5A 4ZKVA 5CS2A 2Q4LA 4ZKLA 1XMLA 4NDGA 3SP4A 5EMTA 3BLAA 5ED3A 5ED6A 3OXKA 5I2EA 1ST4A 4QDEA 3RHNA 3KSVA 1FITA 2H39A 4INCA 3ANOA 1Y23A 1ST0A 3SPDA 5FITA 1GUQA 4QEBA 5IPDA 4NJXA 1FHIA 5IPCA 2FHIA 4NDFA 2Q4HA 4NJYA 4EQGA 4RHNA 1AV5A 4FITA 4XBAA 5IN3A 3SPLA 4ZGLA 3SZQA 3R6FA 3OJ7A 4NDIA 1HXQA 4NK0A 2OIKA 1KPCA 3N1TA 1KPEA 1ZWJA 3O0MA 4EQEA 1XMMA 3N1SA 3O1ZA 3OMFA 3I24A 6FITA 3NRDA 5I2FA 1KPFA 2EO4A 3P0TA 5IPBA 1Z84A 1VLRA 1GUPA 3IMIA 1KPBA 3L7XA 1KPAA 4NJZA 5RHNA 5BV3A 2FITA 4NDHA 1RZYA 4EQHA 3QGZA 3BL7A 3I4SA 6RHNA 3OHEA 4EGUA 4YKLB 3O1XA 3FITA 3TW2A 3BL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4INI A;  1HXP A;  5IPE A;  1EMS A;  4QDV A;  3WO5 A;  3O1C A;  3LB5 A;  4ZKV A;  5CS2 A;  2Q4L A;  4ZKL A;  1XML A;  4NDG A;  3SP4 A;  5EMT A;  3BLA A;  5ED3 A;  5ED6 A;  3OXK A;  5I2E A;  1ST4 A;  4QDE A;  3RHN A;  3KSV A;  1FIT A;  2H39 A;  4INC A;  3ANO A;  1Y23 A;  1ST0 A;  3SPD A;  5FIT A;  1GUQ A;  4QEB A;  5IPD A;  4NJX A;  1FHI A;  5IPC A;  2FHI A;  4NDF A;  2Q4H A;  4NJY A;  4EQG A;  4RHN A;  1AV5 A;  4FIT A;  4XBA A;  5IN3 A;  3SPL A;  4ZGL A;  3SZQ A;  3R6F A;  3OJ7 A;  4NDI A;  1HXQ A;  4NK0 A;  2OIK A;  1KPC A;  3N1T A;  1KPE A;  1ZWJ A;  3O0M A;  4EQE A;  1XMM A;  3N1S A;  3O1Z A;  3OMF A;  3I24 A;  6FIT A;  3NRD A;  5I2F A;  1KPF A;  2EO4 A;  3P0T A;  5IPB A;  1Z84 A;  1VLR A;  1GUP A;  3IMI A;  1KPB A;  3L7X A;  1KPA A;  4NJZ A;  5RHN A;  5BV3 A;  2FIT A;  4NDH A;  1RZY A;  4EQH A;  3QGZ A;  3BL7 A;  3I4S A;  6RHN A;  3OHE A;  4EGU A;  4YKL B;  3O1X A;  3FIT A;  3TW2 A;  3BL9 A; 
#chains in the Genus database with same CATH topology
 4INI A;  1HXP A;  1L9V A;  5IPE A;  1EMS A;  2POF A;  4QDV A;  2R8F A;  3WO5 A;  3O1C A;  3LB5 A;  4ZKV A;  5CS2 A;  2Q4L A;  4ZKL A;  1XML A;  4NDG A;  3SP4 A;  5EMT A;  3BLA A;  5ED3 A;  5ED6 A;  3OXK A;  5I2E A;  1ST4 A;  4QDE A;  4G0J A;  3RHN A;  3KSV A;  2GU0 A;  1FIT A;  2H39 A;  4INC A;  3ANO A;  1Y23 A;  1ST0 A;  3SPD A;  5FIT A;  1GUQ A;  4QEB A;  5IPD A;  2R7P A;  4G0A A;  4NJX A;  1FHI A;  5IPC A;  2FHI A;  4I5T A;  4NDF A;  2Q4H A;  4NJY A;  4EQG A;  4RHN A;  1AV5 A;  4FIT A;  4XBA A;  5IN3 A;  2R7J A;  4ZGL A;  3SPL A;  3SZQ A;  3R6F A;  3OJ7 A;  4NDI A;  1HXQ A;  4NK0 A;  2OIK A;  1KPC A;  4I5W A;  3N1T A;  1KPE A;  1ZWJ A;  3O0M A;  4EQE A;  2LJW A;  2R7C A;  1XMM A;  3N1S A;  3O1Z A;  3OMF A;  3I24 A;  6FIT A;  3NRD A;  5I2F A;  1KPF A;  2EO4 A;  3P0T A;  5IPB A;  1Z84 A;  4I5V A;  1VLR A;  1GUP A;  3IMI A;  1KPB A;  3L7X A;  1KPA A;  4NJZ A;  5RHN A;  5BV3 A;  2FIT A;  4NDH A;  1RZY A;  4EQH A;  3QGZ A;  3BL7 A;  3I4S A;  6RHN A;  3OHE A;  4EGU A;  4YKL B;  3O1X A;  3FIT A;  3TW2 A;  3BL9 A; 
#chains in the Genus database with same CATH homology
 4INI A;  1HXP A;  5IPE A;  1EMS A;  4QDV A;  3WO5 A;  3O1C A;  3LB5 A;  4ZKV A;  5CS2 A;  2Q4L A;  4ZKL A;  1XML A;  4NDG A;  3SP4 A;  5EMT A;  3BLA A;  5ED3 A;  5ED6 A;  3OXK A;  5I2E A;  1ST4 A;  4QDE A;  3RHN A;  3KSV A;  1FIT A;  2H39 A;  4INC A;  3ANO A;  1Y23 A;  1ST0 A;  3SPD A;  5FIT A;  1GUQ A;  4QEB A;  5IPD A;  4NJX A;  1FHI A;  5IPC A;  2FHI A;  4NDF A;  2Q4H A;  4NJY A;  4EQG A;  4RHN A;  1AV5 A;  4FIT A;  4XBA A;  5IN3 A;  3SPL A;  4ZGL A;  3SZQ A;  3R6F A;  3OJ7 A;  4NDI A;  1HXQ A;  4NK0 A;  2OIK A;  1KPC A;  3N1T A;  1KPE A;  1ZWJ A;  3O0M A;  4EQE A;  1XMM A;  3N1S A;  3O1Z A;  3OMF A;  3I24 A;  6FIT A;  3NRD A;  5I2F A;  1KPF A;  2EO4 A;  3P0T A;  5IPB A;  1Z84 A;  1VLR A;  1GUP A;  3IMI A;  1KPB A;  3L7X A;  1KPA A;  4NJZ A;  5RHN A;  5BV3 A;  2FIT A;  4NDH A;  1RZY A;  4EQH A;  3QGZ A;  3BL7 A;  3I4S A;  6RHN A;  3OHE A;  4EGU A;  4YKL B;  3O1X A;  3FIT A;  3TW2 A;  3BL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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