5CYNA

Jc virus large t-antigen origin binding domain f258l mutant
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
127
structure length
127
Chain Sequence
VEDPKDFPVDLHAFLSQAVFSNRTVASFAVYTTKEKAQILYKKLMEKYSVTFISRHGFGGHNILFFLTPHRHRVSAINNYCQKLCTFSFLICKGVNKEYLFYSALCRQPYAVVEESIQGGLKEHDLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein, dna binding protein
molecule keywords Large T antigen
publication title Structural Based Analyses of the JC Virus T-Antigen F258L Mutant Provides Evidence for DNA Dependent Conformational Changes in the C-Termini of Polyomavirus Origin Binding Domains.
pubmed doi rcsb
source organism Jc polyomavirus
total genus 32
structure length 127
sequence length 127
ec nomenclature ec 3.6.4.-:
pdb deposition date 2015-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02217 T_Ag_DNA_bind Origin of replication binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1310.20 Alpha Beta 3-Layer(aba) Sandwich Replication Protein E1; Chain: A, Replication Protein E1; Chain: A, 5cynA00
4NBPA 4GDFA 1UUTA 5D9IA 2IF9A 4ZQ9A 1TBDA 2TBDA 1M55A 1L2MA 3QN2A 5BYGA 3QK2A 2HW0A 1RZ9A 2FUFA 1Z1DB 4LMDA 2ITJA 4FGNA 2IPRA 5CYNA 1L5IA 2ITLA 2NL8A 4FB3A 4ZO0A 2NTCA 5DCXA 3QFQA 4LIFA
chains in the Genus database with same CATH superfamily
4NBPA 4GDFA 1KSXA 1UUTA 4U87A 5D9IA 2IF9A 4ZQ9A 4KW3A 1TBDA 3DKXA 2TBDA 1M55A 1L2MA 3DKYA 3QN2A 5BYGA 3QK2A 2HW0A 1RZ9A 2FUFA 1Z1DB 4LMDA 2ITJA 4FGNA 2IPRA 5CYNA 1L5IA 2ITLA 2NL8A 1F08A 1R9WA 4FB3A 4ZO0A 1KSYA 2NTCA 5DCXA 3QFQA 4LIFA
chains in the Genus database with same CATH topology
4NBPA 4GDFA 1KSXA 1UUTA 4U87A 5D9IA 2IF9A 4ZQ9A 4KW3A 1TBDA 3DKXA 2TBDA 1M55A 1L2MA 3DKYA 3QN2A 5BYGA 3QK2A 2HW0A 1RZ9A 2FUFA 1Z1DB 4LMDA 2ITJA 4FGNA 2IPRA 5CYNA 1L5IA 2ITLA 2NL8A 1F08A 1R9WA 4FB3A 4ZO0A 1KSYA 2NTCA 5DCXA 3QFQA 4LIFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NBP A;  4GDF A;  1UUT A;  5D9I A;  2IF9 A;  4ZQ9 A;  1TBD A;  2TBD A;  1M55 A;  1L2M A;  3QN2 A;  5BYG A;  3QK2 A;  2HW0 A;  1RZ9 A;  2FUF A;  1Z1D B;  4LMD A;  2ITJ A;  4FGN A;  2IPR A;  5CYN A;  1L5I A;  2ITL A;  2NL8 A;  4FB3 A;  4ZO0 A;  2NTC A;  5DCX A;  3QFQ A;  4LIF A; 
#chains in the Genus database with same CATH topology
 4NBP A;  4GDF A;  1KSX A;  1UUT A;  4U87 A;  5D9I A;  2IF9 A;  4ZQ9 A;  4KW3 A;  1TBD A;  3DKX A;  2TBD A;  1M55 A;  1L2M A;  3DKY A;  3QN2 A;  5BYG A;  3QK2 A;  2HW0 A;  1RZ9 A;  2FUF A;  1Z1D B;  4LMD A;  2ITJ A;  4FGN A;  2IPR A;  5CYN A;  1L5I A;  2ITL A;  2NL8 A;  1F08 A;  1R9W A;  4FB3 A;  4ZO0 A;  1KSY A;  2NTC A;  5DCX A;  3QFQ A;  4LIF A; 
#chains in the Genus database with same CATH homology
 4NBP A;  4GDF A;  1KSX A;  1UUT A;  4U87 A;  5D9I A;  2IF9 A;  4ZQ9 A;  4KW3 A;  1TBD A;  3DKX A;  2TBD A;  1M55 A;  1L2M A;  3DKY A;  3QN2 A;  5BYG A;  3QK2 A;  2HW0 A;  1RZ9 A;  2FUF A;  1Z1D B;  4LMD A;  2ITJ A;  4FGN A;  2IPR A;  5CYN A;  1L5I A;  2ITL A;  2NL8 A;  1F08 A;  1R9W A;  4FB3 A;  4ZO0 A;  1KSY A;  2NTC A;  5DCX A;  3QFQ A;  4LIF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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