5D2KA

4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed with magnesium and 2-oxoadipate
Total Genus 88
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
263
structure length
263
Chain Sequence
NRTLTREQVLALAEHIENAELNVHDIGKVTNDFPEMTFADAYDVQWEIRRRKEARGNKIVGLKMGLTSWAKMAQMGVETPIYGFLADYFSVPDGGVVDCSKLIHPKIEAEISVVTKAPLHGPGCHLGDVIAAIDYVIPTVEVIDSRYENFKFDPISVVADNASSTRFITGGRMASLEEVDLRTLGVVMEKNGEVVELGAGAAVLGHPLSSVAMLANLLAERGEHIPAGTFIMTGGITAAVPVAPGDNITVRYQGLGSVSARFI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords 4-oxalocrotonate decarboxylase NahK
publication title Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 88
structure length 263
sequence length 263
chains with identical sequence B
ec nomenclature ec 4.1.1.77: 2-oxo-3-hexenedioate decarboxylase.
pdb deposition date 2015-08-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 5d2kA00
1NR9A 2Q1CX 2EB6A 1GTTA 4MAQA 1HYOA 4DBHA 4PFZA 2Q1DX 3RR6A 1QCOA 3R6OA 5D2IA 5D2JA 1WZOA 2Q1AX 3BQBA 2EB4A 1I7OA 2DFUA 5D2KA 5D2HA 2WQTA 5D2GA 3S52A 5D2FA 3V77A 2EB5A 1NKQA 2HZYA 4DBFA 4QKUA 1QQJA 1QCNA 3QDFA 3LZKA 1SAWA 2Q19X 1SV6A 2Q18X
chains in the Genus database with same CATH superfamily
1NR9A 2Q1CX 2EB6A 1GTTA 4MAQA 1HYOA 4DBHA 4PFZA 2Q1DX 3RR6A 1QCOA 3R6OA 5D2IA 5D2JA 1WZOA 2Q1AX 3BQBA 2EB4A 1I7OA 2DFUA 5D2KA 5D2HA 2WQTA 5D2GA 3S52A 5D2FA 3V77A 2EB5A 1NKQA 2HZYA 4DBFA 4QKUA 1QQJA 1QCNA 3QDFA 3LZKA 1SAWA 2Q19X 1SV6A 2Q18X
chains in the Genus database with same CATH topology
1NR9A 2Q1CX 2EB6A 1GTTA 4MAQA 1HYOA 4DBHA 4PFZA 2Q1DX 3RR6A 1QCOA 3R6OA 5D2IA 5D2JA 1WZOA 2Q1AX 3BQBA 2EB4A 1I7OA 2DFUA 5D2KA 5D2HA 2WQTA 5D2GA 3S52A 5D2FA 3V77A 2EB5A 1NKQA 2HZYA 4DBFA 4QKUA 1QQJA 1QCNA 3QDFA 3LZKA 1SAWA 2Q19X 1SV6A 2Q18X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NR9 A;  2Q1C X;  2EB6 A;  1GTT A;  4MAQ A;  1HYO A;  4DBH A;  4PFZ A;  2Q1D X;  3RR6 A;  1QCO A;  3R6O A;  5D2I A;  5D2J A;  1WZO A;  2Q1A X;  3BQB A;  2EB4 A;  1I7O A;  2DFU A;  5D2K A;  5D2H A;  2WQT A;  5D2G A;  3S52 A;  5D2F A;  3V77 A;  2EB5 A;  1NKQ A;  2HZY A;  4DBF A;  4QKU A;  1QQJ A;  1QCN A;  3QDF A;  3LZK A;  1SAW A;  2Q19 X;  1SV6 A;  2Q18 X; 
#chains in the Genus database with same CATH topology
 1NR9 A;  2Q1C X;  2EB6 A;  1GTT A;  4MAQ A;  1HYO A;  4DBH A;  4PFZ A;  2Q1D X;  3RR6 A;  1QCO A;  3R6O A;  5D2I A;  5D2J A;  1WZO A;  2Q1A X;  3BQB A;  2EB4 A;  1I7O A;  2DFU A;  5D2K A;  5D2H A;  2WQT A;  5D2G A;  3S52 A;  5D2F A;  3V77 A;  2EB5 A;  1NKQ A;  2HZY A;  4DBF A;  4QKU A;  1QQJ A;  1QCN A;  3QDF A;  3LZK A;  1SAW A;  2Q19 X;  1SV6 A;  2Q18 X; 
#chains in the Genus database with same CATH homology
 1NR9 A;  2Q1C X;  2EB6 A;  1GTT A;  4MAQ A;  1HYO A;  4DBH A;  4PFZ A;  2Q1D X;  3RR6 A;  1QCO A;  3R6O A;  5D2I A;  5D2J A;  1WZO A;  2Q1A X;  3BQB A;  2EB4 A;  1I7O A;  2DFU A;  5D2K A;  5D2H A;  2WQT A;  5D2G A;  3S52 A;  5D2F A;  3V77 A;  2EB5 A;  1NKQ A;  2HZY A;  4DBF A;  4QKU A;  1QQJ A;  1QCN A;  3QDF A;  3LZK A;  1SAW A;  2Q19 X;  1SV6 A;  2Q18 X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...