5D42A

2009 h1n1 pa endonuclease mutant f105s in complex with dtmp
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
178
structure length
178
Chain Sequence
MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKSLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Influenza a virus
publication title Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor.
pubmed doi rcsb
molecule keywords Polymerase acidic protein
total genus 68
structure length 178
sequence length 178
ec nomenclature ec 3.1.-.-:
pdb deposition date 2015-08-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 5d42A00
4YYLA 5D4GA 4AWFA 5I13A 5DEBA 5CL0A 5D9JA 4ZHZA 3EBJA 5CZNA 5CCYA 5JHTA 5JHVA 4E5EA 4AVLA 5DBSA 4E5LA 4CGSA 5FDDA 4CGXA 5DESA 3HW3A 4AWKA 4E5IA 4E5HA 4AVQA 5D2OA 3HW4A 5CGVA 3HW5A 4NFZA 4AWMA 4E5JA 4AVGA 4ZI0A 4E5GA 4CHCA 5D42A 4AWGA 3HW6A 4ZQQA 5EGAA 5FDGA 4E5FA 5D8UA 4AWHA
chains in the Genus database with same CATH superfamily
4YYLA 5D4GA 2XI5A 5DEBA 5CL0A 2PFJA 3N78A 4ZHZA 1D2IA 4AVLA 5DBSA 4CGSA 3BM3A 4F0QA 2E52A 1ESGA 1DFMA 4AWMA 4E5JA 2P0JA 4CHCA 3HW6A 5EGAA 5FDGA 1M0IA 3WVIA 4E5FA 4AWFA 5D9JA 3EBJA 5CCYA 5JHTA 2EWFA 5JHVA 3BAMA 1BHMA 2FQZA 3V1ZA 3WVPA 5FDDA 1VRRA 1M0DA 4AVQA 5D2OA 3HW4A 3HW5A 4NFZA 3WVHA 3DW9A 1KNVA 4AWGA 4ZQQA 3WVKA 2GB7A 4AWHA 3A4KA 1DC1A 5I13A 2P14A 3V21A 3V20A 4R28A 4F0PA 3MQYA 4AWKA 4E5HA 1SDOA 5CGVA 3MQ6A 3N7BA 4ZI0A 5D42A 3WVGA 1FZRA 4OC8A 2FOKA 3CAEA 2BAMA 3DVOA 5CZNA 4E5EA 3ODHA 4E5LA 4CGXA 5DESA 3HW3A 1FOKA 4E5IA 1ES8A 4AVGA 1CFRA 4E5GA 1BAMA 3DPGA 2XI7A 5D8UA
chains in the Genus database with same CATH topology
4YYLA 5D4GA 2XI5A 5DEBA 5CL0A 2PFJA 3N78A 4ZHZA 1D2IA 4AVLA 5DBSA 4CGSA 3BM3A 4F0QA 2E52A 1ESGA 1DFMA 4AWMA 4E5JA 2P0JA 4CHCA 3HW6A 5EGAA 5FDGA 1M0IA 3WVIA 4E5FA 4AWFA 5D9JA 3EBJA 5CCYA 5JHTA 2EWFA 5JHVA 3BAMA 1BHMA 2FQZA 3V1ZA 3WVPA 5FDDA 1VRRA 1M0DA 4AVQA 5D2OA 3HW4A 3HW5A 4NFZA 3WVHA 3DW9A 1KNVA 4AWGA 4ZQQA 3WVKA 2GB7A 4AWHA 3A4KA 1DC1A 5I13A 2P14A 3V21A 3V20A 4R28A 4F0PA 3MQYA 4AWKA 4E5HA 1SDOA 5CGVA 3MQ6A 3N7BA 4ZI0A 5D42A 3WVGA 1FZRA 4OC8A 2FOKA 3CAEA 2BAMA 3DVOA 5CZNA 4E5EA 3ODHA 4E5LA 4CGXA 5DESA 3HW3A 1FOKA 4E5IA 1ES8A 4AVGA 1CFRA 4E5GA 1BAMA 3DPGA 2XI7A 5D8UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YYL A;  5D4G A;  4AWF A;  5I13 A;  5DEB A;  5CL0 A;  5D9J A;  4ZHZ A;  3EBJ A;  5CZN A;  5CCY A;  5JHT A;  5JHV A;  4E5E A;  4AVL A;  5DBS A;  4E5L A;  4CGS A;  5FDD A;  4CGX A;  5DES A;  3HW3 A;  4AWK A;  4E5I A;  4E5H A;  4AVQ A;  5D2O A;  3HW4 A;  5CGV A;  3HW5 A;  4NFZ A;  4AWM A;  4E5J A;  4AVG A;  4ZI0 A;  4E5G A;  4CHC A;  5D42 A;  4AWG A;  3HW6 A;  4ZQQ A;  5EGA A;  5FDG A;  4E5F A;  5D8U A;  4AWH A; 
#chains in the Genus database with same CATH topology
 4YYL A;  5D4G A;  2XI5 A;  5DEB A;  5CL0 A;  2PFJ A;  3N78 A;  4ZHZ A;  1D2I A;  4AVL A;  5DBS A;  4CGS A;  3BM3 A;  4F0Q A;  2E52 A;  1ESG A;  1DFM A;  4AWM A;  4E5J A;  2P0J A;  4CHC A;  3HW6 A;  5EGA A;  5FDG A;  1M0I A;  3WVI A;  4E5F A;  4AWF A;  5D9J A;  3EBJ A;  5CCY A;  5JHT A;  2EWF A;  5JHV A;  3BAM A;  1BHM A;  2FQZ A;  3V1Z A;  3WVP A;  5FDD A;  1VRR A;  1M0D A;  4AVQ A;  5D2O A;  3HW4 A;  3HW5 A;  4NFZ A;  3WVH A;  3DW9 A;  1KNV A;  4AWG A;  4ZQQ A;  3WVK A;  2GB7 A;  4AWH A;  3A4K A;  1DC1 A;  5I13 A;  2P14 A;  3V21 A;  3V20 A;  4R28 A;  4F0P A;  3MQY A;  4AWK A;  4E5H A;  1SDO A;  5CGV A;  3MQ6 A;  3N7B A;  4ZI0 A;  5D42 A;  3WVG A;  1FZR A;  4OC8 A;  2FOK A;  3CAE A;  2BAM A;  3DVO A;  5CZN A;  4E5E A;  3ODH A;  4E5L A;  4CGX A;  5DES A;  3HW3 A;  1FOK A;  4E5I A;  1ES8 A;  4AVG A;  1CFR A;  4E5G A;  1BAM A;  3DPG A;  2XI7 A;  5D8U A; 
#chains in the Genus database with same CATH homology
 4YYL A;  5D4G A;  2XI5 A;  5DEB A;  5CL0 A;  2PFJ A;  3N78 A;  4ZHZ A;  1D2I A;  4AVL A;  5DBS A;  4CGS A;  3BM3 A;  4F0Q A;  2E52 A;  1ESG A;  1DFM A;  4AWM A;  4E5J A;  2P0J A;  4CHC A;  3HW6 A;  5EGA A;  5FDG A;  1M0I A;  3WVI A;  4E5F A;  4AWF A;  5D9J A;  3EBJ A;  5CCY A;  5JHT A;  2EWF A;  5JHV A;  3BAM A;  1BHM A;  2FQZ A;  3V1Z A;  3WVP A;  5FDD A;  1VRR A;  1M0D A;  4AVQ A;  5D2O A;  3HW4 A;  3HW5 A;  4NFZ A;  3WVH A;  3DW9 A;  1KNV A;  4AWG A;  4ZQQ A;  3WVK A;  2GB7 A;  4AWH A;  3A4K A;  1DC1 A;  5I13 A;  2P14 A;  3V21 A;  3V20 A;  4R28 A;  4F0P A;  3MQY A;  4AWK A;  4E5H A;  1SDO A;  5CGV A;  3MQ6 A;  3N7B A;  4ZI0 A;  5D42 A;  3WVG A;  1FZR A;  4OC8 A;  2FOK A;  3CAE A;  2BAM A;  3DVO A;  5CZN A;  4E5E A;  3ODH A;  4E5L A;  4CGX A;  5DES A;  3HW3 A;  1FOK A;  4E5I A;  1ES8 A;  4AVG A;  1CFR A;  4E5G A;  1BAM A;  3DPG A;  2XI7 A;  5D8U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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