5D4GA

2009 h1n1 pa endonuclease mutant f105s in complex with rump
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
179
structure length
179
Chain Sequence
MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKSLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Polymerase acidic protein
publication title Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor.
pubmed doi rcsb
source organism Influenza a virus
total genus 68
structure length 179
sequence length 179
ec nomenclature
pdb deposition date 2015-08-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 5d4gA00
4YYLA 4NFZA 3HW6A 4ZHZA 5DEBA 4AVGA 4E5EA 5CZNA 5CL0A 4AWMA 4AWHA 4AVLA 5EGAA 5CGVA 5FDGA 5DESA 5JHVA 5D8UA 4E5FA 4E5HA 4AWGA 4AWKA 3HW3A 3HW4A 4ZQQA 3HW5A 3EBJA 4E5IA 5FDDA 5D42A 4CHCA 5JHTA 5I13A 4ZI0A 5D4GA 5CCYA 4E5LA 4AVQA 4E5GA 4AWFA 4CGXA 5D2OA 5D9JA 4E5JA 5DBSA 4CGSA
chains in the Genus database with same CATH superfamily
3WVKA 3HW6A 4F0PA 4ZHZA 5DEBA 5CZNA 4AVLA 1D2IA 5EGAA 2BAMA 5JHVA 5D8UA 1M0IA 4AWKA 4CHCA 2XI7A 5D4GA 2P14A 4E5GA 1VRRA 2PFJA 2P0JA 4CGSA 1CFRA 3V20A 3DW9A 3MQ6A 4AVGA 2EWFA 1FZRA 4AWHA 1BHMA 1ESGA 1FOKA 3N78A 5FDGA 3HW4A 4OC8A 4ZQQA 2GB7A 5FDDA 4ZI0A 3DVOA 4AVQA 4AWFA 1SDOA 5D2OA 5D9JA 4E5JA 4YYLA 2XI5A 4NFZA 4E5EA 5CL0A 5CGVA 3A4KA 4E5HA 3HW3A 3HW5A 1DFMA 4E5IA 5JHTA 3WVHA 3V21A 5CCYA 4E5LA 2FOKA 3MQYA 4CGXA 4F0QA 3BAMA 4R28A 3WVGA 1BAMA 3WVIA 3V1ZA 2FQZA 1ES8A 4AWMA 3DPGA 1DC1A 5DESA 1M0DA 1KNVA 4E5FA 3ODHA 4AWGA 3WVPA 3EBJA 3BM3A 5D42A 5I13A 3N7BA 3CAEA 2E52A 5DBSA
chains in the Genus database with same CATH topology
3WVKA 3HW6A 4F0PA 4ZHZA 5DEBA 5CZNA 4AVLA 1D2IA 5EGAA 2BAMA 5JHVA 5D8UA 1M0IA 4AWKA 4CHCA 2XI7A 5D4GA 2P14A 4E5GA 1VRRA 2PFJA 2P0JA 4CGSA 1CFRA 3V20A 3DW9A 3MQ6A 4AVGA 2EWFA 1FZRA 4AWHA 1BHMA 1ESGA 1FOKA 3N78A 5FDGA 3HW4A 4OC8A 4ZQQA 2GB7A 5FDDA 4ZI0A 3DVOA 4AVQA 4AWFA 1SDOA 5D2OA 5D9JA 4E5JA 4YYLA 2XI5A 4NFZA 4E5EA 5CL0A 5CGVA 3A4KA 4E5HA 3HW3A 3HW5A 1DFMA 4E5IA 5JHTA 3WVHA 3V21A 5CCYA 4E5LA 2FOKA 3MQYA 4CGXA 4F0QA 3BAMA 4R28A 3WVGA 1BAMA 3WVIA 3V1ZA 2FQZA 1ES8A 4AWMA 3DPGA 1DC1A 5DESA 1M0DA 1KNVA 4E5FA 3ODHA 4AWGA 3WVPA 3EBJA 3BM3A 5D42A 5I13A 3N7BA 3CAEA 2E52A 5DBSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YYL A;  4NFZ A;  3HW6 A;  4ZHZ A;  5DEB A;  4AVG A;  4E5E A;  5CZN A;  5CL0 A;  4AWM A;  4AWH A;  4AVL A;  5EGA A;  5CGV A;  5FDG A;  5DES A;  5JHV A;  5D8U A;  4E5F A;  4E5H A;  4AWG A;  4AWK A;  3HW3 A;  3HW4 A;  4ZQQ A;  3HW5 A;  3EBJ A;  4E5I A;  5FDD A;  5D42 A;  4CHC A;  5JHT A;  5I13 A;  4ZI0 A;  5D4G A;  5CCY A;  4E5L A;  4AVQ A;  4E5G A;  4AWF A;  4CGX A;  5D2O A;  5D9J A;  4E5J A;  5DBS A;  4CGS A; 
#chains in the Genus database with same CATH topology
 3WVK A;  3HW6 A;  4F0P A;  4ZHZ A;  5DEB A;  5CZN A;  4AVL A;  1D2I A;  5EGA A;  2BAM A;  5JHV A;  5D8U A;  1M0I A;  4AWK A;  4CHC A;  2XI7 A;  5D4G A;  2P14 A;  4E5G A;  1VRR A;  2PFJ A;  2P0J A;  4CGS A;  1CFR A;  3V20 A;  3DW9 A;  3MQ6 A;  4AVG A;  2EWF A;  1FZR A;  4AWH A;  1BHM A;  1ESG A;  1FOK A;  3N78 A;  5FDG A;  3HW4 A;  4OC8 A;  4ZQQ A;  2GB7 A;  5FDD A;  4ZI0 A;  3DVO A;  4AVQ A;  4AWF A;  1SDO A;  5D2O A;  5D9J A;  4E5J A;  4YYL A;  2XI5 A;  4NFZ A;  4E5E A;  5CL0 A;  5CGV A;  3A4K A;  4E5H A;  3HW3 A;  3HW5 A;  1DFM A;  4E5I A;  5JHT A;  3WVH A;  3V21 A;  5CCY A;  4E5L A;  2FOK A;  3MQY A;  4CGX A;  4F0Q A;  3BAM A;  4R28 A;  3WVG A;  1BAM A;  3WVI A;  3V1Z A;  2FQZ A;  1ES8 A;  4AWM A;  3DPG A;  1DC1 A;  5DES A;  1M0D A;  1KNV A;  4E5F A;  3ODH A;  4AWG A;  3WVP A;  3EBJ A;  3BM3 A;  5D42 A;  5I13 A;  3N7B A;  3CAE A;  2E52 A;  5DBS A; 
#chains in the Genus database with same CATH homology
 3WVK A;  3HW6 A;  4F0P A;  4ZHZ A;  5DEB A;  5CZN A;  4AVL A;  1D2I A;  5EGA A;  2BAM A;  5JHV A;  5D8U A;  1M0I A;  4AWK A;  4CHC A;  2XI7 A;  5D4G A;  2P14 A;  4E5G A;  1VRR A;  2PFJ A;  2P0J A;  4CGS A;  1CFR A;  3V20 A;  3DW9 A;  3MQ6 A;  4AVG A;  2EWF A;  1FZR A;  4AWH A;  1BHM A;  1ESG A;  1FOK A;  3N78 A;  5FDG A;  3HW4 A;  4OC8 A;  4ZQQ A;  2GB7 A;  5FDD A;  4ZI0 A;  3DVO A;  4AVQ A;  4AWF A;  1SDO A;  5D2O A;  5D9J A;  4E5J A;  4YYL A;  2XI5 A;  4NFZ A;  4E5E A;  5CL0 A;  5CGV A;  3A4K A;  4E5H A;  3HW3 A;  3HW5 A;  1DFM A;  4E5I A;  5JHT A;  3WVH A;  3V21 A;  5CCY A;  4E5L A;  2FOK A;  3MQY A;  4CGX A;  4F0Q A;  3BAM A;  4R28 A;  3WVG A;  1BAM A;  3WVI A;  3V1Z A;  2FQZ A;  1ES8 A;  4AWM A;  3DPG A;  1DC1 A;  5DES A;  1M0D A;  1KNV A;  4E5F A;  3ODH A;  4AWG A;  3WVP A;  3EBJ A;  3BM3 A;  5D42 A;  5I13 A;  3N7B A;  3CAE A;  2E52 A;  5DBS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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