5D5DA

In meso in situ serial x-ray crystallography structure of alge at 100 k
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
451
structure length
403
Chain Sequence
KNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures.
pubmed doi rcsb
source organism Pseudomonas aeruginosa (strain atcc 15692 / pao1 / 1c / prs 101 / lmg 12228)
molecule tags Transport protein
molecule keywords Alginate production protein AlgE
total genus 129
structure length 403
sequence length 451
ec nomenclature
pdb deposition date 2015-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 5d5dA00
4B61A 4AZLA 4XNLA 4XNKA 5IYUA 5D5DA 3RBHA 4AFKA
chains in the Genus database with same CATH superfamily
3AA0B 2R89A 3GP6A 1T1LA 1QJ9A 3KZIO 3LK2B 3AA1B 3AA6B 5GTHO 1HXUA 4RLBA 7PRNA 5B66O 2JMMA 4G76A 4GF4A 4E1SA 1OPFA 1GFNA 5FVNA 2XMXA 1IZNA 2K4TA 3A0HO 2Y2XA 4GCSA 3SYBA 2ZFGA 3A0BO 2FGRA 2LHFA 2M07A 2N2MA 3AAEA 4O49A 5ADXK 2WJRA 4FZNA 3KVDD 4BUMX 1MM5A 3AAAA 5ADXL 4O3WA 2KZ7B 5AFUL 1E54A 2XTQA 3PF1A 6PRNA 1IZNB 2ERVA 4FZLA 3WI4A 1Q9GA 2XE3A 2Y0LA 2WJQA 2FGQX 3PGUA 5E79O 5AFUK 5H2FO 2X9KA 5KAIO 4K3CA 2MNHA 1Q9FA 4B61A 3SYSA 5DL7A 4QQ1A 2R4LA 1T16A 4UB6O 4FOZA 2ZLDA 3O0EA 4IL6O 4PJ0O 1G90A 5IYUA 3UAQA 4LSIA 3WI5A 2M06A 5JDPA 5DL8A 1GFOA 1PRNA 4N75A 3T0SA 4C69X 1MM4A 4FZMA 2XG6A 3SZDA 8PRNA 2R8AA 4FSOA 4FSPA 4C4VB 2Y0KA 1HXXA 2N2LA 2XTRA 3PGRA 4PR7A 2Y0HA 5PRNA 4GHBA 3SZVA 4AYDC 5TISO 4O4UA 4AKMA 4FRXA 3DA3A 3AA6A 4AYMC 5G38A 4O3XB 3BS0A 2F1CX 2QTKA 3BRYA 1GFMA 3NJTA 4JCHA 3A2SX 3T20A 3VE1A 4KR4A 1ZHYA 4N59A 5EE2A 2IWWA 2J4UP 1YS5A 4FUVA 4LSFA 4E1TA 4UB8O 3UPGA 3BRZA 3DZMA 2K0LA 3RBHA 4F4BA 3SY9A 3AA0A 3EMNX 3DA4A 5G26A 1MPFA 2KZ7A 2KDYA 2KXPB 5GV0A 2KXPA 3PQSA 3HW9A 4KR8A 2YNKA 4N74A 3SY7A 3LK42 5DL5A 5G39A 2R88A 3AA7A 4FRTA 2W81C 2XE2A 4O3YA 3TZGA 3T24A 3LK3A 1BH3A 3LK41 4AYNA 2F1VA 3VY9X 2W80C 2PORA 4FMSA 4AYEC 3JCUO 4LSEA 5DL6A 3HOEA 4XNKA 4D65A 4U9CA 4D64A 3LK2A 2R4OA 2YPVA 4AKRB 3K19A 1BT9A 4LSHA 4RL9A 1ZHWA 4K3BA 1GFQA 2IWVA 3PRNA 4CTDA 2F1TA 1S5LO 1PHOA 3PGSA 4N58A 3AAEB 3DWNA 1ZHXA 3POUA 4O3ZA 4RJWA 3FYXA 5T5FA 3AAAB 3C5OA 3VE2A 4AFKA 2AXTO 5B5EO 2PRNA 1BXWA 2GE4A 2OMFA 4O4XA 4RJXA 3PORA 4XNLA 2R4NA 2XE1A 1ORMA 1GFPA 2WVPA 4GCPA 2LFUA 5D5DA 4FQEA 4C00A 3POXA 1HXTA 1QJ8A 4GCQA 3WU2O 4AZLA 4RLCA 3HOLA 3VZTX 2R4PA 3LK3B 4Z3TA 2JQYA 3AA1A 3AA7B 3HWBA 5GTIO 2ODJA 5KAFO 3V8UA 2Y7SA 3G7GA 4JFBA 5G3AA 3POQA 3VZUX 2XE5A 3QRAA 4C4VA 4FT6A 3VY8X 4FESA 1OSMA 2X27X 4KRAA 1ZHZA 2J1NA 1P4TA 2KC0A 3NSGA 4G75A 1ZHTA 4D5UA 4AUIA 3DWOX 3QRCA 2MHLA 4AKRA 4AYID 3JTYA 3VZWX 1H6S1 4PUXA 3UU2A 2O4VA 3PQUA 1THQA 1QJPA
chains in the Genus database with same CATH topology
3AA0B 3GP6A 1QJ9A 3LK2B 3AA1B 3AA6B 1HXUA 4RLBA 7PRNA 2JMMA 4G76A 4GF4A 4E1SA 1OPFA 1GFNA 5FVNA 2XMXA 1IZNA 2K4TA 2Y2XA 4GCSA 3SYBA 2ZFGA 3AAEA 2FGRA 2LHFA 2M07A 2N2MA 4O49A 5ADXK 4FZNA 3KVDD 4BUMX 1MM5A 3AAAA 5ADXL 4O3WA 2KZ7B 5AFUL 2XTQA 1E54A 6PRNA 1IZNB 2ERVA 4FZLA 3WI4A 1Q9GA 2XE3A 2Y0LA 2FGQX 2MNHA 1Q9FA 4B61A 3SYSA 5DL7A 4QQ1A 4FOZA 2ZLDA 3O0EA 1G90A 5IYUA 3UAQA 4LSIA 3WI5A 2M06A 5JDPA 5DL8A 1GFOA 1PRNA 3T0SA 4C69X 1MM4A 4FZMA 2XG6A 3SZDA 8PRNA 4FSOA 4FSPA 2Y0KA 1HXXA 2N2LA 2XTRA 5PRNA 2Y0HA 3SZVA 4GHBA 4AYDC 4O4UA 4AKMA 4FRXA 3DA3A 3AA6A 4AYMC 4O3XB 2QTKA 1GFMA 4JCHA 3A2SX 3T20A 3VE1A 4KR4A 1ZHYA 4N59A 5EE2A 2J4UP 1YS5A 4FUVA 4LSFA 4E1TA 3UPGA 3RBHA 2K0LA 4F4BA 3SY9A 3AA0A 3EMNX 3DA4A 5G26A 1MPFA 2KZ7A 2KDYA 2KXPB 5GV0A 2KXPA 3PQSA 3HW9A 4KR8A 2YNKA 3SY7A 3LK42 5DL5A 3AA7A 4FRTA 2W81C 2XE2A 4O3YA 3TZGA 3T24A 3LK3A 1BH3A 3LK41 4AYNA 2F1VA 3VY9X 2W80C 2PORA 4FMSA 4AYEC 4LSEA 5DL6A 3HOEA 4XNKA 4D65A 4U9CA 4D64A 3LK2A 2YPVA 4AKRB 3K19A 1BT9A 4LSHA 4RL9A 1ZHWA 1GFQA 3PRNA 2F1TA 1PHOA 4N58A 4O3ZA 3AAEB 1ZHXA 3POUA 4RJWA 3VE2A 3FYXA 5T5FA 3AAAB 3C5OA 4AFKA 2PRNA 1BXWA 2GE4A 2OMFA 4O4XA 4RJXA 3PORA 4XNLA 2XE1A 1ORMA 1GFPA 4GCPA 2LFUA 5D5DA 3POXA 1HXTA 1QJ8A 4GCQA 4AZLA 4RLCA 3HOLA 3VZTX 3LK3B 4Z3TA 3AA1A 3AA7B 3HWBA 2ODJA 3V8UA 2Y7SA 3G7GA 4JFBA 3POQA 3VZUX 2XE5A 3QRAA 5AFUK 4FT6A 3VY8X 4FESA 1OSMA 2X27X 4KRAA 1ZHZA 2J1NA 1P4TA 2KC0A 3NSGA 4G75A 1ZHTA 4D5UA 4AUIA 3QRCA 2MHLA 4AKRA 4AYID 3JTYA 3VZWX 1H6S1 4PUXA 3UU2A 2O4VA 3PQUA 1THQA 1QJPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B61 A;  4AZL A;  4XNL A;  4XNK A;  5IYU A;  5D5D A;  3RBH A;  4AFK A; 
#chains in the Genus database with same CATH topology
 3AA0 B;  2R89 A;  3GP6 A;  1T1L A;  1QJ9 A;  3KZI O;  3LK2 B;  3AA1 B;  3AA6 B;  5GTH O;  1HXU A;  4RLB A;  7PRN A;  5B66 O;  2JMM A;  4G76 A;  4GF4 A;  4E1S A;  1OPF A;  1GFN A;  5FVN A;  2XMX A;  1IZN A;  2K4T A;  3A0H O;  2Y2X A;  4GCS A;  3SYB A;  2ZFG A;  3A0B O;  2FGR A;  2LHF A;  2M07 A;  2N2M A;  3AAE A;  4O49 A;  5ADX K;  2WJR A;  4FZN A;  3KVD D;  4BUM X;  1MM5 A;  3AAA A;  5ADX L;  4O3W A;  2KZ7 B;  5AFU L;  1E54 A;  2XTQ A;  3PF1 A;  6PRN A;  1IZN B;  2ERV A;  4FZL A;  3WI4 A;  1Q9G A;  2XE3 A;  2Y0L A;  2WJQ A;  2FGQ X;  3PGU A;  5E79 O;  5AFU K;  5H2F O;  2X9K A;  5KAI O;  4K3C A;  2MNH A;  1Q9F A;  4B61 A;  3SYS A;  5DL7 A;  4QQ1 A;  2R4L A;  1T16 A;  4UB6 O;  4FOZ A;  2ZLD A;  3O0E A;  4IL6 O;  4PJ0 O;  1G90 A;  5IYU A;  3UAQ A;  4LSI A;  3WI5 A;  2M06 A;  5JDP A;  5DL8 A;  1GFO A;  1PRN A;  4N75 A;  3T0S A;  4C69 X;  1MM4 A;  4FZM A;  2XG6 A;  3SZD A;  8PRN A;  2R8A A;  4FSO A;  4FSP A;  4C4V B;  2Y0K A;  1HXX A;  2N2L A;  2XTR A;  3PGR A;  4PR7 A;  2Y0H A;  5PRN A;  4GHB A;  3SZV A;  4AYD C;  5TIS O;  4O4U A;  4AKM A;  4FRX A;  3DA3 A;  3AA6 A;  4AYM C;  5G38 A;  4O3X B;  3BS0 A;  2F1C X;  2QTK A;  3BRY A;  1GFM A;  3NJT A;  4JCH A;  3A2S X;  3T20 A;  3VE1 A;  4KR4 A;  1ZHY A;  4N59 A;  5EE2 A;  2IWW A;  2J4U P;  1YS5 A;  4FUV A;  4LSF A;  4E1T A;  4UB8 O;  3UPG A;  3BRZ A;  3DZM A;  2K0L A;  3RBH A;  4F4B A;  3SY9 A;  3AA0 A;  3EMN X;  3DA4 A;  5G26 A;  1MPF A;  2KZ7 A;  2KDY A;  2KXP B;  5GV0 A;  2KXP A;  3PQS A;  3HW9 A;  4KR8 A;  2YNK A;  4N74 A;  3SY7 A;  3LK4 2;  5DL5 A;  5G39 A;  2R88 A;  3AA7 A;  4FRT A;  2W81 C;  2XE2 A;  4O3Y A;  3TZG A;  3T24 A;  3LK3 A;  1BH3 A;  3LK4 1;  4AYN A;  2F1V A;  3VY9 X;  2W80 C;  2POR A;  4FMS A;  4AYE C;  3JCU O;  4LSE A;  5DL6 A;  3HOE A;  4XNK A;  4D65 A;  4U9C A;  4D64 A;  3LK2 A;  2R4O A;  2YPV A;  4AKR B;  3K19 A;  1BT9 A;  4LSH A;  4RL9 A;  1ZHW A;  4K3B A;  1GFQ A;  2IWV A;  3PRN A;  4CTD A;  2F1T A;  1S5L O;  1PHO A;  3PGS A;  4N58 A;  3AAE B;  3DWN A;  1ZHX A;  3POU A;  4O3Z A;  4RJW A;  3FYX A;  5T5F A;  3AAA B;  3C5O A;  3VE2 A;  4AFK A;  2AXT O;  5B5E O;  2PRN A;  1BXW A;  2GE4 A;  2OMF A;  4O4X A;  4RJX A;  3POR A;  4XNL A;  2R4N A;  2XE1 A;  1ORM A;  1GFP A;  2WVP A;  4GCP A;  2LFU A;  5D5D A;  4FQE A;  4C00 A;  3POX A;  1HXT A;  1QJ8 A;  4GCQ A;  3WU2 O;  4AZL A;  4RLC A;  3HOL A;  3VZT X;  2R4P A;  3LK3 B;  4Z3T A;  2JQY A;  3AA1 A;  3AA7 B;  3HWB A;  5GTI O;  2ODJ A;  5KAF O;  3V8U A;  2Y7S A;  3G7G A;  4JFB A;  5G3A A;  3POQ A;  3VZU X;  2XE5 A;  3QRA A;  4C4V A;  4FT6 A;  3VY8 X;  4FES A;  1OSM A;  2X27 X;  4KRA A;  1ZHZ A;  2J1N A;  1P4T A;  2KC0 A;  3NSG A;  4G75 A;  1ZHT A;  4D5U A;  4AUI A;  3DWO X;  3QRC A;  2MHL A;  4AKR A;  4AYI D;  3JTY A;  3VZW X;  1H6S 1;  4PUX A;  3UU2 A;  2O4V A;  3PQU A;  1THQ A;  1QJP A; 
#chains in the Genus database with same CATH homology
 3AA0 B;  3GP6 A;  1QJ9 A;  3LK2 B;  3AA1 B;  3AA6 B;  1HXU A;  4RLB A;  7PRN A;  2JMM A;  4G76 A;  4GF4 A;  4E1S A;  1OPF A;  1GFN A;  5FVN A;  2XMX A;  1IZN A;  2K4T A;  2Y2X A;  4GCS A;  3SYB A;  2ZFG A;  3AAE A;  2FGR A;  2LHF A;  2M07 A;  2N2M A;  4O49 A;  5ADX K;  4FZN A;  3KVD D;  4BUM X;  1MM5 A;  3AAA A;  5ADX L;  4O3W A;  2KZ7 B;  5AFU L;  2XTQ A;  1E54 A;  6PRN A;  1IZN B;  2ERV A;  4FZL A;  3WI4 A;  1Q9G A;  2XE3 A;  2Y0L A;  2FGQ X;  2MNH A;  1Q9F A;  4B61 A;  3SYS A;  5DL7 A;  4QQ1 A;  4FOZ A;  2ZLD A;  3O0E A;  1G90 A;  5IYU A;  3UAQ A;  4LSI A;  3WI5 A;  2M06 A;  5JDP A;  5DL8 A;  1GFO A;  1PRN A;  3T0S A;  4C69 X;  1MM4 A;  4FZM A;  2XG6 A;  3SZD A;  8PRN A;  4FSO A;  4FSP A;  2Y0K A;  1HXX A;  2N2L A;  2XTR A;  5PRN A;  2Y0H A;  3SZV A;  4GHB A;  4AYD C;  4O4U A;  4AKM A;  4FRX A;  3DA3 A;  3AA6 A;  4AYM C;  4O3X B;  2QTK A;  1GFM A;  4JCH A;  3A2S X;  3T20 A;  3VE1 A;  4KR4 A;  1ZHY A;  4N59 A;  5EE2 A;  2J4U P;  1YS5 A;  4FUV A;  4LSF A;  4E1T A;  3UPG A;  3RBH A;  2K0L A;  4F4B A;  3SY9 A;  3AA0 A;  3EMN X;  3DA4 A;  5G26 A;  1MPF A;  2KZ7 A;  2KDY A;  2KXP B;  5GV0 A;  2KXP A;  3PQS A;  3HW9 A;  4KR8 A;  2YNK A;  3SY7 A;  3LK4 2;  5DL5 A;  3AA7 A;  4FRT A;  2W81 C;  2XE2 A;  4O3Y A;  3TZG A;  3T24 A;  3LK3 A;  1BH3 A;  3LK4 1;  4AYN A;  2F1V A;  3VY9 X;  2W80 C;  2POR A;  4FMS A;  4AYE C;  4LSE A;  5DL6 A;  3HOE A;  4XNK A;  4D65 A;  4U9C A;  4D64 A;  3LK2 A;  2YPV A;  4AKR B;  3K19 A;  1BT9 A;  4LSH A;  4RL9 A;  1ZHW A;  1GFQ A;  3PRN A;  2F1T A;  1PHO A;  4N58 A;  4O3Z A;  3AAE B;  1ZHX A;  3POU A;  4RJW A;  3VE2 A;  3FYX A;  5T5F A;  3AAA B;  3C5O A;  4AFK A;  2PRN A;  1BXW A;  2GE4 A;  2OMF A;  4O4X A;  4RJX A;  3POR A;  4XNL A;  2XE1 A;  1ORM A;  1GFP A;  4GCP A;  2LFU A;  5D5D A;  3POX A;  1HXT A;  1QJ8 A;  4GCQ A;  4AZL A;  4RLC A;  3HOL A;  3VZT X;  3LK3 B;  4Z3T A;  3AA1 A;  3AA7 B;  3HWB A;  2ODJ A;  3V8U A;  2Y7S A;  3G7G A;  4JFB A;  3POQ A;  3VZU X;  2XE5 A;  3QRA A;  5AFU K;  4FT6 A;  3VY8 X;  4FES A;  1OSM A;  2X27 X;  4KRA A;  1ZHZ A;  2J1N A;  1P4T A;  2KC0 A;  3NSG A;  4G75 A;  1ZHT A;  4D5U A;  4AUI A;  3QRC A;  2MHL A;  4AKR A;  4AYI D;  3JTY A;  3VZW X;  1H6S 1;  4PUX A;  3UU2 A;  2O4V A;  3PQU A;  1THQ A;  1QJP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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