5D5DA

In meso in situ serial x-ray crystallography structure of alge at 100 k
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
451
structure length
403
Chain Sequence
KNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Alginate production protein AlgE
publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures.
pubmed doi rcsb
source organism Pseudomonas aeruginosa (strain atcc 15692 / pao1 / 1c / prs 101 / lmg 12228)
molecule tags Transport protein
total genus 129
structure length 403
sequence length 451
ec nomenclature
pdb deposition date 2015-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 5d5dA00
5D5DA 4B61A 4XNLA 4XNKA 5IYUA 3RBHA 4AFKA 4AZLA
chains in the Genus database with same CATH superfamily
1HXUA 3AA7A 4AKRA 2R4PA 3WI5A 3PRNA 8PRNA 3QRCA 4C4VB 1G90A 3POUA 2OMFA 4G76A 3O0EA 3AAEA 3VZTX 3BRZA 2IWVA 3SY7A 5AFUK 5B5EO 4FZNA 1PRNA 5ADXL 3AA0A 1YS5A 4FSPA 4PJ0O 3LK41 3PQSA 4XNLA 1T16A 2AXTO 5DL5A 4O49A 2FGQX 4LSIA 1GFQA 3JCUO 4G75A 4O3YA 4CTDA 4GF4A 2WVPA 4AYNA 2K0LA 1ZHWA 2PORA 3LK2A 2Y0HA 3SZDA 4C00A 3PGUA 3C5OA 4GHBA 4D64A 2FGRA 2YNKA 2R89A 2XTQA 1IZNB 2ZFGA 3NSGA 4FSOA 2ERVA 4N58A 1THQA 1MPFA 2YPVA 1BXWA 1E54A 1QJ9A 2KZ7B 3LK3B 3NJTA 4JFBA 2R4NA 2JQYA 5T5FA 2X27X 4FRTA 5H2FO 5TISO 2LFUA 1T1LA 2X9KA 2R4LA 3POXA 4K3BA 4N59A 2Y7SA 4AKRB 4AYEC 4O3XB 3QRAA 3VZUX 4FT6A 1GFMA 3AAEB 5AFUL 1BT9A 4O4UA 2F1VA 3A0BO 4LSEA 3K19A 5GTHO 2Y0KA 5FVNA 3VY8X 4UB6O 5B66O 5KAFO 2J4UP 5EE2A 4KRAA 3HWBA 4AKMA 4RJWA 4C69X 1BH3A 2K4TA 3UPGA 3PF1A 2F1CX 2ZLDA 4N75A 2KC0A 1ZHXA 3VE1A 5G38A 1P4TA 5GTIO 2Y0LA 4AYMC 1MM4A 3KZIO 3AAAB 3UU2A 3DZMA 5KAIO 3DA4A 3POQA 1ZHZA 2XE3A 3VE2A 6PRNA 4LSFA 1PHOA 3AA1A 4AYID 1OPFA 3RBHA 5E79O 5PRNA 3DWNA 4RL9A 4C4VA 2XE2A 4RJXA 2XE5A 3AA6B 2J1NA 3EMNX 2JMMA 5GV0A 3PQUA 4UB8O 3AA7B 5G39A 2QTKA 1ORMA 3UAQA 1GFPA 1Q9GA 1MM5A 4O3WA 1HXTA 4FESA 5ADXK 3T20A 2KXPA 2IWWA 2F1TA 4U9CA 3A2SX 4PR7A 3SZVA 3T24A 4D5UA 4Z3TA 5DL8A 5DL6A 2R88A 4FOZA 4FRXA 3T0SA 1GFNA 2LHFA 3AA0B 4GCSA 4AZLA 7PRNA 4FUVA 4QQ1A 3BRYA 1QJ8A 2W80C 3FYXA 3VZWX 4JCHA 4F4BA 1IZNA 2PRNA 2R8AA 4AFKA 5DL7A 4RLBA 2KZ7A 2M06A 3LK3A 1H6S1 4KR4A 3LK2B 2MHLA 4B61A 4AUIA 2M07A 3PGSA 4XNKA 4AYDC 2ODJA 3G7GA 2KDYA 3AA1B 4IL6O 3PGRA 3PORA 4GCPA 4N74A 3SYBA 4FMSA 4D65A 3BS0A 3JTYA 4RLCA 2N2LA 4LSHA 2W81C 4FZMA 3TZGA 3KVDD 4FZLA 4O3ZA 5IYUA 2R4OA 1ZHYA 3HW9A 5G26A 3A0HO 3DA3A 2GE4A 4KR8A 1QJPA 2O4VA 2MNHA 2WJRA 2KXPB 1GFOA 5JDPA 2XE1A 1HXXA 3WI4A 4FQEA 1S5LO 5D5DA 3VY9X 4O4XA 3AAAA 1OSMA 1Q9FA 2WJQA 4PUXA 3HOEA 5G3AA 4E1SA 3SYSA 3V8UA 4K3CA 1ZHTA 2XMXA 3LK42 3SY9A 2XG6A 2XTRA 2Y2XA 4GCQA 4E1TA 3HOLA 3AA6A 2N2MA 3WU2O 3GP6A 4BUMX 3DWOX
chains in the Genus database with same CATH topology
1HXUA 3AA7A 4AKRA 3WI5A 3PRNA 8PRNA 3QRCA 1G90A 3POUA 2OMFA 4G76A 3O0EA 3AAEA 3VZTX 3SY7A 5AFUK 5ADXL 4FZNA 1PRNA 3AA0A 1YS5A 4FSPA 4XNLA 3LK41 3PQSA 5DL5A 4O49A 2FGQX 4LSIA 1GFQA 4G75A 4O3YA 4GF4A 4AYNA 2K0LA 1ZHWA 2PORA 3LK2A 2Y0HA 3SZDA 4D64A 4GHBA 3C5OA 2FGRA 2YNKA 2ZFGA 2XTQA 1IZNB 3NSGA 4FSOA 4N58A 2ERVA 1THQA 1MPFA 2YPVA 1BXWA 1E54A 1QJ9A 2KZ7B 3LK3B 4JFBA 5T5FA 2X27X 4FRTA 2LFUA 3POXA 4N59A 2Y7SA 4AKRB 4AYEC 4O3XB 3QRAA 3VZUX 4FT6A 1GFMA 3AAEB 5AFUL 1BT9A 4O4UA 2F1VA 4LSEA 3K19A 2Y0KA 5FVNA 2J4UP 5EE2A 4KRAA 3HWBA 4AKMA 4RJWA 4C69X 1BH3A 2K4TA 3UPGA 2ZLDA 2KC0A 1ZHXA 3VE1A 1P4TA 4AYMC 2Y0LA 1MM4A 3AAAB 3UU2A 3DA4A 3POQA 1ZHZA 2XE3A 3VE2A 6PRNA 4LSFA 1PHOA 3AA1A 4AYID 1OPFA 3RBHA 5PRNA 4RL9A 2XE2A 4RJXA 2XE5A 3AA6B 2J1NA 3EMNX 2JMMA 5GV0A 3PQUA 3AA7B 2QTKA 1ORMA 3UAQA 1GFPA 1Q9GA 1MM5A 4O3WA 1HXTA 4FESA 5ADXK 3T20A 2KXPA 2F1TA 4U9CA 3A2SX 3SZVA 4Z3TA 4D5UA 5DL8A 5DL6A 4FOZA 4FRXA 3T0SA 1GFNA 2LHFA 3AA0B 4GCSA 4AZLA 7PRNA 4FUVA 4QQ1A 1QJ8A 2W80C 3FYXA 3VZWX 4JCHA 4F4BA 1IZNA 2PRNA 4AFKA 5DL7A 4RLBA 2KZ7A 2M06A 3LK3A 1H6S1 4KR4A 3LK2B 2MHLA 4B61A 4AUIA 2M07A 4XNKA 4AYDC 2ODJA 3G7GA 2KDYA 3AA1B 3T24A 3PORA 4GCPA 3VY8X 4D65A 3SYBA 4FMSA 3JTYA 4RLCA 2N2LA 4LSHA 2W81C 4FZMA 3TZGA 3KVDD 4FZLA 4O3ZA 5IYUA 1ZHYA 3HW9A 5G26A 3DA3A 2GE4A 4KR8A 1QJPA 2O4VA 2MNHA 5JDPA 2KXPB 1GFOA 2XE1A 1HXXA 3WI4A 5D5DA 3VY9X 4O4XA 3AAAA 1OSMA 1Q9FA 4PUXA 3HOEA 4E1SA 3SYSA 3V8UA 1ZHTA 2XMXA 3LK42 3SY9A 2XG6A 2XTRA 2Y2XA 4GCQA 4E1TA 3HOLA 3AA6A 2N2MA 3GP6A 4BUMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D5D A;  4B61 A;  4XNL A;  4XNK A;  5IYU A;  3RBH A;  4AFK A;  4AZL A; 
#chains in the Genus database with same CATH topology
 1HXU A;  3AA7 A;  4AKR A;  2R4P A;  3WI5 A;  3PRN A;  8PRN A;  3QRC A;  4C4V B;  1G90 A;  3POU A;  2OMF A;  4G76 A;  3O0E A;  3AAE A;  3VZT X;  3BRZ A;  2IWV A;  3SY7 A;  5AFU K;  5B5E O;  4FZN A;  1PRN A;  5ADX L;  3AA0 A;  1YS5 A;  4FSP A;  4PJ0 O;  3LK4 1;  3PQS A;  4XNL A;  1T16 A;  2AXT O;  5DL5 A;  4O49 A;  2FGQ X;  4LSI A;  1GFQ A;  3JCU O;  4G75 A;  4O3Y A;  4CTD A;  4GF4 A;  2WVP A;  4AYN A;  2K0L A;  1ZHW A;  2POR A;  3LK2 A;  2Y0H A;  3SZD A;  4C00 A;  3PGU A;  3C5O A;  4GHB A;  4D64 A;  2FGR A;  2YNK A;  2R89 A;  2XTQ A;  1IZN B;  2ZFG A;  3NSG A;  4FSO A;  2ERV A;  4N58 A;  1THQ A;  1MPF A;  2YPV A;  1BXW A;  1E54 A;  1QJ9 A;  2KZ7 B;  3LK3 B;  3NJT A;  4JFB A;  2R4N A;  2JQY A;  5T5F A;  2X27 X;  4FRT A;  5H2F O;  5TIS O;  2LFU A;  1T1L A;  2X9K A;  2R4L A;  3POX A;  4K3B A;  4N59 A;  2Y7S A;  4AKR B;  4AYE C;  4O3X B;  3QRA A;  3VZU X;  4FT6 A;  1GFM A;  3AAE B;  5AFU L;  1BT9 A;  4O4U A;  2F1V A;  3A0B O;  4LSE A;  3K19 A;  5GTH O;  2Y0K A;  5FVN A;  3VY8 X;  4UB6 O;  5B66 O;  5KAF O;  2J4U P;  5EE2 A;  4KRA A;  3HWB A;  4AKM A;  4RJW A;  4C69 X;  1BH3 A;  2K4T A;  3UPG A;  3PF1 A;  2F1C X;  2ZLD A;  4N75 A;  2KC0 A;  1ZHX A;  3VE1 A;  5G38 A;  1P4T A;  5GTI O;  2Y0L A;  4AYM C;  1MM4 A;  3KZI O;  3AAA B;  3UU2 A;  3DZM A;  5KAI O;  3DA4 A;  3POQ A;  1ZHZ A;  2XE3 A;  3VE2 A;  6PRN A;  4LSF A;  1PHO A;  3AA1 A;  4AYI D;  1OPF A;  3RBH A;  5E79 O;  5PRN A;  3DWN A;  4RL9 A;  4C4V A;  2XE2 A;  4RJX A;  2XE5 A;  3AA6 B;  2J1N A;  3EMN X;  2JMM A;  5GV0 A;  3PQU A;  4UB8 O;  3AA7 B;  5G39 A;  2QTK A;  1ORM A;  3UAQ A;  1GFP A;  1Q9G A;  1MM5 A;  4O3W A;  1HXT A;  4FES A;  5ADX K;  3T20 A;  2KXP A;  2IWW A;  2F1T A;  4U9C A;  3A2S X;  4PR7 A;  3SZV A;  3T24 A;  4D5U A;  4Z3T A;  5DL8 A;  5DL6 A;  2R88 A;  4FOZ A;  4FRX A;  3T0S A;  1GFN A;  2LHF A;  3AA0 B;  4GCS A;  4AZL A;  7PRN A;  4FUV A;  4QQ1 A;  3BRY A;  1QJ8 A;  2W80 C;  3FYX A;  3VZW X;  4JCH A;  4F4B A;  1IZN A;  2PRN A;  2R8A A;  4AFK A;  5DL7 A;  4RLB A;  2KZ7 A;  2M06 A;  3LK3 A;  1H6S 1;  4KR4 A;  3LK2 B;  2MHL A;  4B61 A;  4AUI A;  2M07 A;  3PGS A;  4XNK A;  4AYD C;  2ODJ A;  3G7G A;  2KDY A;  3AA1 B;  4IL6 O;  3PGR A;  3POR A;  4GCP A;  4N74 A;  3SYB A;  4FMS A;  4D65 A;  3BS0 A;  3JTY A;  4RLC A;  2N2L A;  4LSH A;  2W81 C;  4FZM A;  3TZG A;  3KVD D;  4FZL A;  4O3Z A;  5IYU A;  2R4O A;  1ZHY A;  3HW9 A;  5G26 A;  3A0H O;  3DA3 A;  2GE4 A;  4KR8 A;  1QJP A;  2O4V A;  2MNH A;  2WJR A;  2KXP B;  1GFO A;  5JDP A;  2XE1 A;  1HXX A;  3WI4 A;  4FQE A;  1S5L O;  5D5D A;  3VY9 X;  4O4X A;  3AAA A;  1OSM A;  1Q9F A;  2WJQ A;  4PUX A;  3HOE A;  5G3A A;  4E1S A;  3SYS A;  3V8U A;  4K3C A;  1ZHT A;  2XMX A;  3LK4 2;  3SY9 A;  2XG6 A;  2XTR A;  2Y2X A;  4GCQ A;  4E1T A;  3HOL A;  3AA6 A;  2N2M A;  3WU2 O;  3GP6 A;  4BUM X;  3DWO X; 
#chains in the Genus database with same CATH homology
 1HXU A;  3AA7 A;  4AKR A;  3WI5 A;  3PRN A;  8PRN A;  3QRC A;  1G90 A;  3POU A;  2OMF A;  4G76 A;  3O0E A;  3AAE A;  3VZT X;  3SY7 A;  5AFU K;  5ADX L;  4FZN A;  1PRN A;  3AA0 A;  1YS5 A;  4FSP A;  4XNL A;  3LK4 1;  3PQS A;  5DL5 A;  4O49 A;  2FGQ X;  4LSI A;  1GFQ A;  4G75 A;  4O3Y A;  4GF4 A;  4AYN A;  2K0L A;  1ZHW A;  2POR A;  3LK2 A;  2Y0H A;  3SZD A;  4D64 A;  4GHB A;  3C5O A;  2FGR A;  2YNK A;  2ZFG A;  2XTQ A;  1IZN B;  3NSG A;  4FSO A;  4N58 A;  2ERV A;  1THQ A;  1MPF A;  2YPV A;  1BXW A;  1E54 A;  1QJ9 A;  2KZ7 B;  3LK3 B;  4JFB A;  5T5F A;  2X27 X;  4FRT A;  2LFU A;  3POX A;  4N59 A;  2Y7S A;  4AKR B;  4AYE C;  4O3X B;  3QRA A;  3VZU X;  4FT6 A;  1GFM A;  3AAE B;  5AFU L;  1BT9 A;  4O4U A;  2F1V A;  4LSE A;  3K19 A;  2Y0K A;  5FVN A;  2J4U P;  5EE2 A;  4KRA A;  3HWB A;  4AKM A;  4RJW A;  4C69 X;  1BH3 A;  2K4T A;  3UPG A;  2ZLD A;  2KC0 A;  1ZHX A;  3VE1 A;  1P4T A;  4AYM C;  2Y0L A;  1MM4 A;  3AAA B;  3UU2 A;  3DA4 A;  3POQ A;  1ZHZ A;  2XE3 A;  3VE2 A;  6PRN A;  4LSF A;  1PHO A;  3AA1 A;  4AYI D;  1OPF A;  3RBH A;  5PRN A;  4RL9 A;  2XE2 A;  4RJX A;  2XE5 A;  3AA6 B;  2J1N A;  3EMN X;  2JMM A;  5GV0 A;  3PQU A;  3AA7 B;  2QTK A;  1ORM A;  3UAQ A;  1GFP A;  1Q9G A;  1MM5 A;  4O3W A;  1HXT A;  4FES A;  5ADX K;  3T20 A;  2KXP A;  2F1T A;  4U9C A;  3A2S X;  3SZV A;  4Z3T A;  4D5U A;  5DL8 A;  5DL6 A;  4FOZ A;  4FRX A;  3T0S A;  1GFN A;  2LHF A;  3AA0 B;  4GCS A;  4AZL A;  7PRN A;  4FUV A;  4QQ1 A;  1QJ8 A;  2W80 C;  3FYX A;  3VZW X;  4JCH A;  4F4B A;  1IZN A;  2PRN A;  4AFK A;  5DL7 A;  4RLB A;  2KZ7 A;  2M06 A;  3LK3 A;  1H6S 1;  4KR4 A;  3LK2 B;  2MHL A;  4B61 A;  4AUI A;  2M07 A;  4XNK A;  4AYD C;  2ODJ A;  3G7G A;  2KDY A;  3AA1 B;  3T24 A;  3POR A;  4GCP A;  3VY8 X;  4D65 A;  3SYB A;  4FMS A;  3JTY A;  4RLC A;  2N2L A;  4LSH A;  2W81 C;  4FZM A;  3TZG A;  3KVD D;  4FZL A;  4O3Z A;  5IYU A;  1ZHY A;  3HW9 A;  5G26 A;  3DA3 A;  2GE4 A;  4KR8 A;  1QJP A;  2O4V A;  2MNH A;  5JDP A;  2KXP B;  1GFO A;  2XE1 A;  1HXX A;  3WI4 A;  5D5D A;  3VY9 X;  4O4X A;  3AAA A;  1OSM A;  1Q9F A;  4PUX A;  3HOE A;  4E1S A;  3SYS A;  3V8U A;  1ZHT A;  2XMX A;  3LK4 2;  3SY9 A;  2XG6 A;  2XTR A;  2Y2X A;  4GCQ A;  4E1T A;  3HOL A;  3AA6 A;  2N2M A;  3GP6 A;  4BUM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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