5D9JA

2009 h1n1 pa endonuclease mutant f105s in complex with l-742,001
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
179
structure length
179
Chain Sequence
MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKSLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Polymerase acidic protein
publication title Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor.
pubmed doi rcsb
source organism Influenza a virus
total genus 63
structure length 179
sequence length 179
ec nomenclature
pdb deposition date 2015-08-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 5d9jA00
4YYLA 5CZNA 5DEBA 3HW4A 5JHTA 4E5EA 5I13A 3HW5A 4NFZA 4E5GA 5CCYA 4AWGA 5EGAA 5CL0A 4CGXA 4AWFA 4ZHZA 5FDDA 5D9JA 4E5FA 5D42A 4E5IA 5D2OA 5JHVA 5D4GA 4ZI0A 4AWHA 4AVLA 4E5JA 4E5LA 3EBJA 5FDGA 5CGVA 4AVQA 4CHCA 4AVGA 4E5HA 4CGSA 5DBSA 4AWKA 4ZQQA 5D8UA 3HW6A 3HW3A 5DESA 4AWMA
chains in the Genus database with same CATH superfamily
3HW4A 3WVKA 3WVIA 3WVHA 3MQ6A 1M0DA 3DW9A 5D9JA 2FOKA 3A4KA 1M0IA 1ESGA 4OC8A 1FZRA 5JHVA 5D4GA 4AWHA 2BAMA 4E5LA 5CGVA 3DPGA 2GB7A 4CHCA 2EWFA 5D8UA 5DEBA 2XI7A 4NFZA 4E5GA 3WVPA 4F0QA 1ES8A 2E52A 3V21A 1D2IA 5FDDA 3CAEA 3WVGA 5D2OA 1KNVA 4E5JA 5FDGA 4CGSA 4YYLA 4E5HA 3N7BA 3HW6A 3DVOA 5DESA 5I13A 2P14A 3V20A 4F0PA 5CL0A 2FQZA 1BHMA 5D42A 4E5IA 1SDOA 3BAMA 4AVQA 4ZI0A 3HW3A 1BAMA 5CZNA 4E5EA 3HW5A 2P0JA 5CCYA 1DFMA 4AWGA 1DC1A 5EGAA 4CGXA 4AWFA 1FOKA 4ZHZA 3MQYA 3ODHA 4E5FA 1CFRA 4AVLA 1VRRA 2XI5A 3EBJA 3N78A 4AVGA 4R28A 3BM3A 2PFJA 3V1ZA 5DBSA 4AWKA 4ZQQA 5JHTA 4AWMA
chains in the Genus database with same CATH topology
3HW4A 3WVKA 3WVIA 3WVHA 3MQ6A 1M0DA 3DW9A 5D9JA 2FOKA 3A4KA 1M0IA 1ESGA 4OC8A 1FZRA 5JHVA 5D4GA 4AWHA 2BAMA 4E5LA 5CGVA 3DPGA 2GB7A 4CHCA 2EWFA 5D8UA 5DEBA 2XI7A 4NFZA 4E5GA 3WVPA 4F0QA 1ES8A 2E52A 3V21A 1D2IA 5FDDA 3CAEA 3WVGA 5D2OA 1KNVA 4E5JA 5FDGA 4CGSA 4YYLA 4E5HA 3N7BA 3HW6A 3DVOA 5DESA 5I13A 2P14A 3V20A 4F0PA 5CL0A 2FQZA 1BHMA 5D42A 4E5IA 1SDOA 3BAMA 4AVQA 4ZI0A 3HW3A 1BAMA 5CZNA 4E5EA 3HW5A 2P0JA 5CCYA 1DFMA 4AWGA 1DC1A 5EGAA 4CGXA 4AWFA 1FOKA 4ZHZA 3MQYA 3ODHA 4E5FA 1CFRA 4AVLA 1VRRA 2XI5A 3EBJA 3N78A 4AVGA 4R28A 3BM3A 2PFJA 3V1ZA 5DBSA 4AWKA 4ZQQA 5JHTA 4AWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YYL A;  5CZN A;  5DEB A;  3HW4 A;  5JHT A;  4E5E A;  5I13 A;  3HW5 A;  4NFZ A;  4E5G A;  5CCY A;  4AWG A;  5EGA A;  5CL0 A;  4CGX A;  4AWF A;  4ZHZ A;  5FDD A;  5D9J A;  4E5F A;  5D42 A;  4E5I A;  5D2O A;  5JHV A;  5D4G A;  4ZI0 A;  4AWH A;  4AVL A;  4E5J A;  4E5L A;  3EBJ A;  5FDG A;  5CGV A;  4AVQ A;  4CHC A;  4AVG A;  4E5H A;  4CGS A;  5DBS A;  4AWK A;  4ZQQ A;  5D8U A;  3HW6 A;  3HW3 A;  5DES A;  4AWM A; 
#chains in the Genus database with same CATH topology
 3HW4 A;  3WVK A;  3WVI A;  3WVH A;  3MQ6 A;  1M0D A;  3DW9 A;  5D9J A;  2FOK A;  3A4K A;  1M0I A;  1ESG A;  4OC8 A;  1FZR A;  5JHV A;  5D4G A;  4AWH A;  2BAM A;  4E5L A;  5CGV A;  3DPG A;  2GB7 A;  4CHC A;  2EWF A;  5D8U A;  5DEB A;  2XI7 A;  4NFZ A;  4E5G A;  3WVP A;  4F0Q A;  1ES8 A;  2E52 A;  3V21 A;  1D2I A;  5FDD A;  3CAE A;  3WVG A;  5D2O A;  1KNV A;  4E5J A;  5FDG A;  4CGS A;  4YYL A;  4E5H A;  3N7B A;  3HW6 A;  3DVO A;  5DES A;  5I13 A;  2P14 A;  3V20 A;  4F0P A;  5CL0 A;  2FQZ A;  1BHM A;  5D42 A;  4E5I A;  1SDO A;  3BAM A;  4AVQ A;  4ZI0 A;  3HW3 A;  1BAM A;  5CZN A;  4E5E A;  3HW5 A;  2P0J A;  5CCY A;  1DFM A;  4AWG A;  1DC1 A;  5EGA A;  4CGX A;  4AWF A;  1FOK A;  4ZHZ A;  3MQY A;  3ODH A;  4E5F A;  1CFR A;  4AVL A;  1VRR A;  2XI5 A;  3EBJ A;  3N78 A;  4AVG A;  4R28 A;  3BM3 A;  2PFJ A;  3V1Z A;  5DBS A;  4AWK A;  4ZQQ A;  5JHT A;  4AWM A; 
#chains in the Genus database with same CATH homology
 3HW4 A;  3WVK A;  3WVI A;  3WVH A;  3MQ6 A;  1M0D A;  3DW9 A;  5D9J A;  2FOK A;  3A4K A;  1M0I A;  1ESG A;  4OC8 A;  1FZR A;  5JHV A;  5D4G A;  4AWH A;  2BAM A;  4E5L A;  5CGV A;  3DPG A;  2GB7 A;  4CHC A;  2EWF A;  5D8U A;  5DEB A;  2XI7 A;  4NFZ A;  4E5G A;  3WVP A;  4F0Q A;  1ES8 A;  2E52 A;  3V21 A;  1D2I A;  5FDD A;  3CAE A;  3WVG A;  5D2O A;  1KNV A;  4E5J A;  5FDG A;  4CGS A;  4YYL A;  4E5H A;  3N7B A;  3HW6 A;  3DVO A;  5DES A;  5I13 A;  2P14 A;  3V20 A;  4F0P A;  5CL0 A;  2FQZ A;  1BHM A;  5D42 A;  4E5I A;  1SDO A;  3BAM A;  4AVQ A;  4ZI0 A;  3HW3 A;  1BAM A;  5CZN A;  4E5E A;  3HW5 A;  2P0J A;  5CCY A;  1DFM A;  4AWG A;  1DC1 A;  5EGA A;  4CGX A;  4AWF A;  1FOK A;  4ZHZ A;  3MQY A;  3ODH A;  4E5F A;  1CFR A;  4AVL A;  1VRR A;  2XI5 A;  3EBJ A;  3N78 A;  4AVG A;  4R28 A;  3BM3 A;  2PFJ A;  3V1Z A;  5DBS A;  4AWK A;  4ZQQ A;  5JHT A;  4AWM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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