5DCXA

Structural studies of aav2 rep68 reveal a partially structured linker and compact domain conformation
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
215
structure length
209
Chain Sequence
HMPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQNKENQNPNSDAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Protein Rep68
publication title Structural Studies of AAV2 Rep68 Reveal a Partially Structured Linker and Compact Domain Conformation.
pubmed doi rcsb
source organism Adeno-associated virus 2
total genus 64
structure length 209
sequence length 215
chains with identical sequence B, C, D, E, F, G, H, I, J, K
ec nomenclature ec 3.6.4.12: DNA helicase.
pdb deposition date 2015-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08724 Rep_N Rep protein catalytic domain like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1310.20 Alpha Beta 3-Layer(aba) Sandwich Replication Protein E1; Chain: A, Replication Protein E1; Chain: A, 5dcxA00
4NBPA 4FGNA 2IF9A 2TBDA 4LIFA 4ZQ9A 1Z1DB 2ITJA 1M55A 2ITLA 5BYGA 1L5IA 3QN2A 5D9IA 2NL8A 4GDFA 5CYNA 1TBDA 4ZO0A 2FUFA 5DCXA 2NTCA 4FB3A 1L2MA 2IPRA 1RZ9A 3QFQA 2HW0A 4LMDA 3QK2A 1UUTA
chains in the Genus database with same CATH superfamily
1F08A 4NBPA 1KSYA 4FGNA 4U87A 2IF9A 2TBDA 4LIFA 1KSXA 4ZQ9A 3DKXA 1Z1DB 2ITJA 3DKYA 1M55A 2ITLA 5BYGA 1R9WA 1L5IA 3QN2A 4KW3A 5D9IA 2NL8A 4GDFA 5CYNA 1TBDA 4ZO0A 2FUFA 5DCXA 2NTCA 4FB3A 1L2MA 2IPRA 1RZ9A 3QFQA 2HW0A 4LMDA 3QK2A 1UUTA
chains in the Genus database with same CATH topology
1F08A 4NBPA 1KSYA 4FGNA 4U87A 2IF9A 2TBDA 4LIFA 1KSXA 4ZQ9A 3DKXA 1Z1DB 2ITJA 3DKYA 1M55A 2ITLA 5BYGA 1R9WA 1L5IA 3QN2A 4KW3A 5D9IA 2NL8A 4GDFA 5CYNA 1TBDA 4ZO0A 2FUFA 5DCXA 2NTCA 4FB3A 1L2MA 2IPRA 1RZ9A 3QFQA 2HW0A 4LMDA 3QK2A 1UUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NBP A;  4FGN A;  2IF9 A;  2TBD A;  4LIF A;  4ZQ9 A;  1Z1D B;  2ITJ A;  1M55 A;  2ITL A;  5BYG A;  1L5I A;  3QN2 A;  5D9I A;  2NL8 A;  4GDF A;  5CYN A;  1TBD A;  4ZO0 A;  2FUF A;  5DCX A;  2NTC A;  4FB3 A;  1L2M A;  2IPR A;  1RZ9 A;  3QFQ A;  2HW0 A;  4LMD A;  3QK2 A;  1UUT A; 
#chains in the Genus database with same CATH topology
 1F08 A;  4NBP A;  1KSY A;  4FGN A;  4U87 A;  2IF9 A;  2TBD A;  4LIF A;  1KSX A;  4ZQ9 A;  3DKX A;  1Z1D B;  2ITJ A;  3DKY A;  1M55 A;  2ITL A;  5BYG A;  1R9W A;  1L5I A;  3QN2 A;  4KW3 A;  5D9I A;  2NL8 A;  4GDF A;  5CYN A;  1TBD A;  4ZO0 A;  2FUF A;  5DCX A;  2NTC A;  4FB3 A;  1L2M A;  2IPR A;  1RZ9 A;  3QFQ A;  2HW0 A;  4LMD A;  3QK2 A;  1UUT A; 
#chains in the Genus database with same CATH homology
 1F08 A;  4NBP A;  1KSY A;  4FGN A;  4U87 A;  2IF9 A;  2TBD A;  4LIF A;  1KSX A;  4ZQ9 A;  3DKX A;  1Z1D B;  2ITJ A;  3DKY A;  1M55 A;  2ITL A;  5BYG A;  1R9W A;  1L5I A;  3QN2 A;  4KW3 A;  5D9I A;  2NL8 A;  4GDF A;  5CYN A;  1TBD A;  4ZO0 A;  2FUF A;  5DCX A;  2NTC A;  4FB3 A;  1L2M A;  2IPR A;  1RZ9 A;  3QFQ A;  2HW0 A;  4LMD A;  3QK2 A;  1UUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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