5DD2A

Human gelsolin from residues glu28 to arg161 with calcium
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
123
structure length
123
Chain Sequence
EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Gelsolin
publication title Gelsolin 28-161 with Calcium
rcsb
source organism Homo sapiens
total genus 34
structure length 123
sequence length 123
chains with identical sequence G
ec nomenclature
pdb deposition date 2015-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 5dd2A00
3EGXB 1WM4A 2D8BA 2VIKA 4Z94G 2W0IA 5KYXB 3CIPG 5KYWA 2MOTA 2NUPB 1SVRA 1VFQA 1X67A 3FG6A 5KYWB 1MDUA 2FH3A 1EQYS 1YVNG 2MV2A 3EG9A 3FG7A 5FAFA 4LIZA 2FF3A 4CBXG 1T3YA 5KYNA 2QTVA 5DD2A 3EG9B 4JD2H 5KYYA 1T2LA 2MP4A 3EH2A 1SVYA 3CJBG 5FAEA 5IVUA 3A5MS 4KEDA 3EGDA 1CFYA 4CBUG 5L6WC 1M2OA 3CJCG 3DAWB 2I2QA 2FF6G 5KYYB 1NM1G 5HVKB 1M2VA 3A5OS 3FFNA 1C0FS 2LLFA 1H1VG 2VACA 3EGDB 1TMWA 3CI5G 1Q8XA 2L72A 3TU5B 2FH4A 1M2VB 1JHWA 1NLVG 4PKHB 1QPVA 1P8XA 1V6FA 1NMDG 1PD1A 3EH1A 1F7SA 1AK7A 1D4XG 4KEEA 3EFOA 2LJ8A 1CNUA 3FFKA 1VKKA 5A1MA 1T44G 4BEX1 1ESVS 1PCXA 2NUTA 1RGIG 2VILA 4CBWG 4PKIG 1Q8GA 3EFOB 1TVJA 3Q2BA 2KVKA 1D0NA 1WNJA 1SVQA 1C0GS 5HVKD 1P8ZG 1KCQA 4PKGG 5KYUA 2NUTB 1PD0A 1J72A 3L50A 4S10C 2FH2A 1NPHA 2XFAA 3A5NS 2FGHA 1HQZ1 3A5LS 3EGXA 5KYUB 1COFA 2XF1A 1AHQA 2LXXA 1WFSA 5KYXA 4KEFA 1UDMA 2FH1A 1DEJS 1AK6A 1M4JA 1T3XA 1YAGG 2NUPA 2HD7A
chains in the Genus database with same CATH superfamily
3EGXB 1WM4A 2D8BA 2VIKA 4Z94G 2W0IA 5KYXB 3CIPG 5KYWA 2MOTA 2NUPB 1SVRA 1VFQA 1X67A 3FG6A 5KYWB 1MDUA 2FH3A 1EQYS 1YVNG 2MV2A 3EG9A 3FG7A 5FAFA 4LIZA 2FF3A 4CBXG 1T3YA 5KYNA 2QTVA 5DD2A 3EG9B 4JD2H 5KYYA 1T2LA 2MP4A 3EH2A 1SVYA 3CJBG 5FAEA 5IVUA 3A5MS 4KEDA 3EGDA 1CFYA 4CBUG 5L6WC 1M2OA 3CJCG 3DAWB 2I2QA 2FF6G 5KYYB 1NM1G 5HVKB 1M2VA 3A5OS 3FFNA 1C0FS 2LLFA 1H1VG 2VACA 3EGDB 1TMWA 3CI5G 1Q8XA 2L72A 3TU5B 2FH4A 1M2VB 1JHWA 1NLVG 4PKHB 1QPVA 1P8XA 1V6FA 1NMDG 1PD1A 3EH1A 1F7SA 1AK7A 1D4XG 4KEEA 3EFOA 2LJ8A 1CNUA 3FFKA 1VKKA 5A1MA 1T44G 4BEX1 1ESVS 1PCXA 2NUTA 1RGIG 2VILA 4CBWG 4PKIG 1Q8GA 3EFOB 1TVJA 3Q2BA 2KVKA 1D0NA 1WNJA 1SVQA 1C0GS 5HVKD 1P8ZG 1KCQA 4PKGG 5KYUA 2NUTB 1PD0A 1J72A 3L50A 4S10C 2FH2A 1NPHA 2XFAA 3A5NS 2FGHA 1HQZ1 3A5LS 3EGXA 5KYUB 1COFA 3DA7A 2XF1A 1AHQA 2LXXA 1WFSA 5KYXA 4KEFA 1UDMA 2FH1A 1DEJS 1AK6A 1M4JA 1T3XA 1YAGG 2NUPA 2HD7A
chains in the Genus database with same CATH topology
3EGXB 1WM4A 2D8BA 2VIKA 4Z94G 2W0IA 5KYXB 3CIPG 5KYWA 2MOTA 2NUPB 1SVRA 1VFQA 1X67A 3FG6A 5KYWB 1MDUA 2FH3A 1EQYS 1YVNG 2MV2A 3EG9A 3FG7A 5FAFA 4LIZA 2FF3A 4CBXG 1T3YA 5KYNA 2QTVA 5DD2A 3EG9B 4JD2H 5KYYA 1T2LA 2MP4A 3EH2A 1SVYA 3CJBG 5FAEA 5IVUA 3A5MS 4KEDA 3EGDA 1CFYA 4CBUG 5L6WC 1M2OA 3CJCG 3DAWB 2I2QA 2FF6G 5KYYB 1NM1G 5HVKB 1M2VA 3A5OS 3FFNA 1C0FS 2LLFA 1H1VG 2VACA 3EGDB 1TMWA 3CI5G 1Q8XA 2L72A 3TU5B 2FH4A 1M2VB 1JHWA 1NLVG 4PKHB 1QPVA 1P8XA 1V6FA 1NMDG 1PD1A 3EH1A 1F7SA 1AK7A 1D4XG 4KEEA 3EFOA 2LJ8A 1CNUA 3FFKA 1VKKA 5A1MA 1T44G 4BEX1 1ESVS 1PCXA 2NUTA 1RGIG 2VILA 4CBWG 4PKIG 1Q8GA 3EFOB 1TVJA 3Q2BA 2KVKA 1D0NA 1WNJA 1SVQA 1C0GS 5HVKD 1P8ZG 1KCQA 4PKGG 5KYUA 2NUTB 1PD0A 1J72A 3L50A 4S10C 2FH2A 1NPHA 2XFAA 3A5NS 2FGHA 1HQZ1 3A5LS 3EGXA 5KYUB 1COFA 3DA7A 2XF1A 1AHQA 2LXXA 1WFSA 5KYXA 4KEFA 1UDMA 2FH1A 1DEJS 1AK6A 1M4JA 1T3XA 1YAGG 2NUPA 2HD7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EGX B;  1WM4 A;  2D8B A;  2VIK A;  4Z94 G;  2W0I A;  5KYX B;  3CIP G;  5KYW A;  2MOT A;  2NUP B;  1SVR A;  1VFQ A;  1X67 A;  3FG6 A;  5KYW B;  1MDU A;  2FH3 A;  1EQY S;  1YVN G;  2MV2 A;  3EG9 A;  3FG7 A;  5FAF A;  4LIZ A;  2FF3 A;  4CBX G;  1T3Y A;  5KYN A;  2QTV A;  5DD2 A;  3EG9 B;  4JD2 H;  5KYY A;  1T2L A;  2MP4 A;  3EH2 A;  1SVY A;  3CJB G;  5FAE A;  5IVU A;  3A5M S;  4KED A;  3EGD A;  1CFY A;  4CBU G;  5L6W C;  1M2O A;  3CJC G;  3DAW B;  2I2Q A;  2FF6 G;  5KYY B;  1NM1 G;  5HVK B;  1M2V A;  3A5O S;  3FFN A;  1C0F S;  2LLF A;  1H1V G;  2VAC A;  3EGD B;  1TMW A;  3CI5 G;  1Q8X A;  2L72 A;  3TU5 B;  2FH4 A;  1M2V B;  1JHW A;  1NLV G;  4PKH B;  1QPV A;  1P8X A;  1V6F A;  1NMD G;  1PD1 A;  3EH1 A;  1F7S A;  1AK7 A;  1D4X G;  4KEE A;  3EFO A;  2LJ8 A;  1CNU A;  3FFK A;  1VKK A;  5A1M A;  1T44 G;  4BEX 1;  1ESV S;  1PCX A;  2NUT A;  1RGI G;  2VIL A;  4CBW G;  4PKI G;  1Q8G A;  3EFO B;  1TVJ A;  3Q2B A;  2KVK A;  1D0N A;  1WNJ A;  1SVQ A;  1C0G S;  5HVK D;  1P8Z G;  1KCQ A;  4PKG G;  5KYU A;  2NUT B;  1PD0 A;  1J72 A;  3L50 A;  4S10 C;  2FH2 A;  1NPH A;  2XFA A;  3A5N S;  2FGH A;  1HQZ 1;  3A5L S;  3EGX A;  5KYU B;  1COF A;  2XF1 A;  1AHQ A;  2LXX A;  1WFS A;  5KYX A;  4KEF A;  1UDM A;  2FH1 A;  1DEJ S;  1AK6 A;  1M4J A;  1T3X A;  1YAG G;  2NUP A;  2HD7 A; 
#chains in the Genus database with same CATH topology
 3EGX B;  1WM4 A;  2D8B A;  2VIK A;  4Z94 G;  2W0I A;  5KYX B;  3CIP G;  5KYW A;  2MOT A;  2NUP B;  1SVR A;  1VFQ A;  1X67 A;  3FG6 A;  5KYW B;  1MDU A;  2FH3 A;  1EQY S;  1YVN G;  2MV2 A;  3EG9 A;  3FG7 A;  5FAF A;  4LIZ A;  2FF3 A;  4CBX G;  1T3Y A;  5KYN A;  2QTV A;  5DD2 A;  3EG9 B;  4JD2 H;  5KYY A;  1T2L A;  2MP4 A;  3EH2 A;  1SVY A;  3CJB G;  5FAE A;  5IVU A;  3A5M S;  4KED A;  3EGD A;  1CFY A;  4CBU G;  5L6W C;  1M2O A;  3CJC G;  3DAW B;  2I2Q A;  2FF6 G;  5KYY B;  1NM1 G;  5HVK B;  1M2V A;  3A5O S;  3FFN A;  1C0F S;  2LLF A;  1H1V G;  2VAC A;  3EGD B;  1TMW A;  3CI5 G;  1Q8X A;  2L72 A;  3TU5 B;  2FH4 A;  1M2V B;  1JHW A;  1NLV G;  4PKH B;  1QPV A;  1P8X A;  1V6F A;  1NMD G;  1PD1 A;  3EH1 A;  1F7S A;  1AK7 A;  1D4X G;  4KEE A;  3EFO A;  2LJ8 A;  1CNU A;  3FFK A;  1VKK A;  5A1M A;  1T44 G;  4BEX 1;  1ESV S;  1PCX A;  2NUT A;  1RGI G;  2VIL A;  4CBW G;  4PKI G;  1Q8G A;  3EFO B;  1TVJ A;  3Q2B A;  2KVK A;  1D0N A;  1WNJ A;  1SVQ A;  1C0G S;  5HVK D;  1P8Z G;  1KCQ A;  4PKG G;  5KYU A;  2NUT B;  1PD0 A;  1J72 A;  3L50 A;  4S10 C;  2FH2 A;  1NPH A;  2XFA A;  3A5N S;  2FGH A;  1HQZ 1;  3A5L S;  3EGX A;  5KYU B;  1COF A;  3DA7 A;  2XF1 A;  1AHQ A;  2LXX A;  1WFS A;  5KYX A;  4KEF A;  1UDM A;  2FH1 A;  1DEJ S;  1AK6 A;  1M4J A;  1T3X A;  1YAG G;  2NUP A;  2HD7 A; 
#chains in the Genus database with same CATH homology
 3EGX B;  1WM4 A;  2D8B A;  2VIK A;  4Z94 G;  2W0I A;  5KYX B;  3CIP G;  5KYW A;  2MOT A;  2NUP B;  1SVR A;  1VFQ A;  1X67 A;  3FG6 A;  5KYW B;  1MDU A;  2FH3 A;  1EQY S;  1YVN G;  2MV2 A;  3EG9 A;  3FG7 A;  5FAF A;  4LIZ A;  2FF3 A;  4CBX G;  1T3Y A;  5KYN A;  2QTV A;  5DD2 A;  3EG9 B;  4JD2 H;  5KYY A;  1T2L A;  2MP4 A;  3EH2 A;  1SVY A;  3CJB G;  5FAE A;  5IVU A;  3A5M S;  4KED A;  3EGD A;  1CFY A;  4CBU G;  5L6W C;  1M2O A;  3CJC G;  3DAW B;  2I2Q A;  2FF6 G;  5KYY B;  1NM1 G;  5HVK B;  1M2V A;  3A5O S;  3FFN A;  1C0F S;  2LLF A;  1H1V G;  2VAC A;  3EGD B;  1TMW A;  3CI5 G;  1Q8X A;  2L72 A;  3TU5 B;  2FH4 A;  1M2V B;  1JHW A;  1NLV G;  4PKH B;  1QPV A;  1P8X A;  1V6F A;  1NMD G;  1PD1 A;  3EH1 A;  1F7S A;  1AK7 A;  1D4X G;  4KEE A;  3EFO A;  2LJ8 A;  1CNU A;  3FFK A;  1VKK A;  5A1M A;  1T44 G;  4BEX 1;  1ESV S;  1PCX A;  2NUT A;  1RGI G;  2VIL A;  4CBW G;  4PKI G;  1Q8G A;  3EFO B;  1TVJ A;  3Q2B A;  2KVK A;  1D0N A;  1WNJ A;  1SVQ A;  1C0G S;  5HVK D;  1P8Z G;  1KCQ A;  4PKG G;  5KYU A;  2NUT B;  1PD0 A;  1J72 A;  3L50 A;  4S10 C;  2FH2 A;  1NPH A;  2XFA A;  3A5N S;  2FGH A;  1HQZ 1;  3A5L S;  3EGX A;  5KYU B;  1COF A;  3DA7 A;  2XF1 A;  1AHQ A;  2LXX A;  1WFS A;  5KYX A;  4KEF A;  1UDM A;  2FH1 A;  1DEJ S;  1AK6 A;  1M4J A;  1T3X A;  1YAG G;  2NUP A;  2HD7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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