5DFFA

Human ape1 product complex
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
276
structure length
276
Chain Sequence
ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase/dna
molecule keywords DNA-(apurinic or apyrimidinic site) lyase
publication title Capturing snapshots of APE1 processing DNA damage.
pubmed doi rcsb
source organism Homo sapiens
total genus 86
structure length 276
sequence length 276
chains with identical sequence B
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2015-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 5dffA00
1E9NA 2V0SA 1SI6X 4K6LF 3U8UA 2XSWA 1NTFA 3G2CA 4FPVA 4LNDA 3G3CA 5DFHA 3I46A 3I41A 3G0RA 4QHEA 3WCXA 4AWNA 3G6SA 5INKA 3G2DA 1I9ZA 5J3SA 1YJHA 3NGNA 2A3ZB 2F2FB 3G91A 1DNKA 5A7JA 3N9VA 1BIXA 5HT2A 1ATND 4F1RA 3G8VA 2VOAA 4CMLA 1SR4B 4IEMA 4PUQA 3CJCD 2A40B 1DE8A 3G3YA 5INPA 5J8NA 3MTCA 4B5IA 5CFEA 2JC4A 1I9YA 1AKOA 1VYBA 2V0RA 4F1HB 5INNA 5J42A 4QHDA 4RUWA 3NR8A 3I48A 5INLA 4L1ZA 3NGOA 4B5JA 5INMA 2A42B 5DFJA 2ISIA 4L21A 3G0AA 5J3ZA 3DNIA 3I5VA 5DV2A 3GA6A 1HD7A 3L1WA 2DNJA 4JG3A 2JC5A 4L20A 3W3DB 2O3CA 4A9CA 2EI9A 1DE9A 2J63A 2DDTA 4CMNA 5J3PA 4B5FA 4FVAA 3G38A 5CFGA 1WDUA 2F1NA 3MPRA 3FZIA 4GZ1A 4GEWA 2DDRA 5DFFA 4GYZA 5DFIA 5INQA 2O3HA 5EWTA 4B5HA 5A7IA 4C1RA 5DV4A 3G00A 3K55A 3W2YA 2UYRX 2DDSA 3TEBA 5DG0A 4L1YA 4QH9A 1Y21A 1DEWA 4GZ2A 4B5MA 4GZ0A 5INOA 2D1KB 3G1KA 3W2XA 3G4TA 4F1HA 2IMQX 2A41B 4B5GA 3NGQA 4F1IA 1ZWXA
chains in the Genus database with same CATH superfamily
1E9NA 2V0SA 1SI6X 4K6LF 3U8UA 2XSWA 1NTFA 3G2CA 4FPVA 4LNDA 3G3CA 5DFHA 3I46A 3I41A 3G0RA 4QHEA 3WCXA 4AWNA 3G6SA 5INKA 3G2DA 1I9ZA 5J3SA 1YJHA 3NGNA 2A3ZB 2F2FB 3G91A 1DNKA 5A7JA 3N9VA 1BIXA 5HT2A 1ATND 4F1RA 3G8VA 2VOAA 4CMLA 1SR4B 4IEMA 4PUQA 3CJCD 2A40B 1DE8A 3G3YA 5INPA 5J8NA 3MTCA 4B5IA 5CFEA 2JC4A 1I9YA 1AKOA 1VYBA 2V0RA 4F1HB 5INNA 5J42A 4QHDA 4RUWA 3NR8A 3I48A 5INLA 4L1ZA 3NGOA 4B5JA 5INMA 2A42B 5DFJA 2ISIA 4L21A 3G0AA 5J3ZA 3DNIA 3I5VA 5DV2A 3GA6A 1HD7A 3L1WA 2DNJA 4JG3A 2JC5A 4L20A 3W3DB 2O3CA 4A9CA 2EI9A 1DE9A 2J63A 2DDTA 4CMNA 5J3PA 4B5FA 4FVAA 3G38A 5CFGA 1WDUA 2F1NA 3MPRA 3FZIA 4GZ1A 4GEWA 2DDRA 5DFFA 4GYZA 5DFIA 5INQA 2O3HA 5EWTA 4B5HA 5A7IA 4C1RA 5DV4A 3G00A 3K55A 3W2YA 2UYRX 2DDSA 3TEBA 5DG0A 4L1YA 4QH9A 1Y21A 1DEWA 4GZ2A 4B5MA 4GZ0A 5INOA 2D1KB 3G1KA 3W2XA 3G4TA 4F1HA 2IMQX 2A41B 4B5GA 3NGQA 4F1IA 1ZWXA
chains in the Genus database with same CATH topology
1E9NA 2V0SA 1SI6X 4K6LF 3U8UA 2XSWA 1NTFA 3G2CA 4FPVA 4LNDA 3G3CA 5DFHA 3I46A 3I41A 3G0RA 4QHEA 3WCXA 4AWNA 3G6SA 5INKA 3G2DA 1I9ZA 5J3SA 1YJHA 3NGNA 2A3ZB 2F2FB 3G91A 1DNKA 5A7JA 3N9VA 1BIXA 5HT2A 1ATND 4F1RA 3G8VA 2VOAA 4CMLA 1SR4B 4IEMA 4PUQA 3CJCD 2A40B 1DE8A 3G3YA 5INPA 5J8NA 3MTCA 4B5IA 5CFEA 2JC4A 1I9YA 1AKOA 1VYBA 2V0RA 4F1HB 5INNA 5J42A 4QHDA 4RUWA 3NR8A 3I48A 5INLA 4L1ZA 3NGOA 4B5JA 5INMA 2A42B 5DFJA 2ISIA 4L21A 3G0AA 5J3ZA 3DNIA 3I5VA 5DV2A 3GA6A 1HD7A 3L1WA 2DNJA 4JG3A 2JC5A 4L20A 3W3DB 2O3CA 4A9CA 2EI9A 1DE9A 2J63A 2DDTA 4CMNA 5J3PA 4B5FA 4FVAA 3G38A 5CFGA 1WDUA 2F1NA 3MPRA 3FZIA 4GZ1A 4GEWA 2DDRA 5DFFA 4GYZA 5DFIA 5INQA 2O3HA 5EWTA 4B5HA 5A7IA 4C1RA 5DV4A 3G00A 3K55A 3W2YA 2UYRX 2DDSA 3TEBA 5DG0A 4L1YA 4QH9A 1Y21A 1DEWA 4GZ2A 4B5MA 4GZ0A 5INOA 2D1KB 3G1KA 3W2XA 3G4TA 4F1HA 2IMQX 2A41B 4B5GA 3NGQA 4F1IA 1ZWXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E9N A;  2V0S A;  1SI6 X;  4K6L F;  3U8U A;  2XSW A;  1NTF A;  3G2C A;  4FPV A;  4LND A;  3G3C A;  5DFH A;  3I46 A;  3I41 A;  3G0R A;  4QHE A;  3WCX A;  4AWN A;  3G6S A;  5INK A;  3G2D A;  1I9Z A;  5J3S A;  1YJH A;  3NGN A;  2A3Z B;  2F2F B;  3G91 A;  1DNK A;  5A7J A;  3N9V A;  1BIX A;  5HT2 A;  1ATN D;  4F1R A;  3G8V A;  2VOA A;  4CML A;  1SR4 B;  4IEM A;  4PUQ A;  3CJC D;  2A40 B;  1DE8 A;  3G3Y A;  5INP A;  5J8N A;  3MTC A;  4B5I A;  5CFE A;  2JC4 A;  1I9Y A;  1AKO A;  1VYB A;  2V0R A;  4F1H B;  5INN A;  5J42 A;  4QHD A;  4RUW A;  3NR8 A;  3I48 A;  5INL A;  4L1Z A;  3NGO A;  4B5J A;  5INM A;  2A42 B;  5DFJ A;  2ISI A;  4L21 A;  3G0A A;  5J3Z A;  3DNI A;  3I5V A;  5DV2 A;  3GA6 A;  1HD7 A;  3L1W A;  2DNJ A;  4JG3 A;  2JC5 A;  4L20 A;  3W3D B;  2O3C A;  4A9C A;  2EI9 A;  1DE9 A;  2J63 A;  2DDT A;  4CMN A;  5J3P A;  4B5F A;  4FVA A;  3G38 A;  5CFG A;  1WDU A;  2F1N A;  3MPR A;  3FZI A;  4GZ1 A;  4GEW A;  2DDR A;  5DFF A;  4GYZ A;  5DFI A;  5INQ A;  2O3H A;  5EWT A;  4B5H A;  5A7I A;  4C1R A;  5DV4 A;  3G00 A;  3K55 A;  3W2Y A;  2UYR X;  2DDS A;  3TEB A;  5DG0 A;  4L1Y A;  4QH9 A;  1Y21 A;  1DEW A;  4GZ2 A;  4B5M A;  4GZ0 A;  5INO A;  2D1K B;  3G1K A;  3W2X A;  3G4T A;  4F1H A;  2IMQ X;  2A41 B;  4B5G A;  3NGQ A;  4F1I A;  1ZWX A; 
#chains in the Genus database with same CATH topology
 1E9N A;  2V0S A;  1SI6 X;  4K6L F;  3U8U A;  2XSW A;  1NTF A;  3G2C A;  4FPV A;  4LND A;  3G3C A;  5DFH A;  3I46 A;  3I41 A;  3G0R A;  4QHE A;  3WCX A;  4AWN A;  3G6S A;  5INK A;  3G2D A;  1I9Z A;  5J3S A;  1YJH A;  3NGN A;  2A3Z B;  2F2F B;  3G91 A;  1DNK A;  5A7J A;  3N9V A;  1BIX A;  5HT2 A;  1ATN D;  4F1R A;  3G8V A;  2VOA A;  4CML A;  1SR4 B;  4IEM A;  4PUQ A;  3CJC D;  2A40 B;  1DE8 A;  3G3Y A;  5INP A;  5J8N A;  3MTC A;  4B5I A;  5CFE A;  2JC4 A;  1I9Y A;  1AKO A;  1VYB A;  2V0R A;  4F1H B;  5INN A;  5J42 A;  4QHD A;  4RUW A;  3NR8 A;  3I48 A;  5INL A;  4L1Z A;  3NGO A;  4B5J A;  5INM A;  2A42 B;  5DFJ A;  2ISI A;  4L21 A;  3G0A A;  5J3Z A;  3DNI A;  3I5V A;  5DV2 A;  3GA6 A;  1HD7 A;  3L1W A;  2DNJ A;  4JG3 A;  2JC5 A;  4L20 A;  3W3D B;  2O3C A;  4A9C A;  2EI9 A;  1DE9 A;  2J63 A;  2DDT A;  4CMN A;  5J3P A;  4B5F A;  4FVA A;  3G38 A;  5CFG A;  1WDU A;  2F1N A;  3MPR A;  3FZI A;  4GZ1 A;  4GEW A;  2DDR A;  5DFF A;  4GYZ A;  5DFI A;  5INQ A;  2O3H A;  5EWT A;  4B5H A;  5A7I A;  4C1R A;  5DV4 A;  3G00 A;  3K55 A;  3W2Y A;  2UYR X;  2DDS A;  3TEB A;  5DG0 A;  4L1Y A;  4QH9 A;  1Y21 A;  1DEW A;  4GZ2 A;  4B5M A;  4GZ0 A;  5INO A;  2D1K B;  3G1K A;  3W2X A;  3G4T A;  4F1H A;  2IMQ X;  2A41 B;  4B5G A;  3NGQ A;  4F1I A;  1ZWX A; 
#chains in the Genus database with same CATH homology
 1E9N A;  2V0S A;  1SI6 X;  4K6L F;  3U8U A;  2XSW A;  1NTF A;  3G2C A;  4FPV A;  4LND A;  3G3C A;  5DFH A;  3I46 A;  3I41 A;  3G0R A;  4QHE A;  3WCX A;  4AWN A;  3G6S A;  5INK A;  3G2D A;  1I9Z A;  5J3S A;  1YJH A;  3NGN A;  2A3Z B;  2F2F B;  3G91 A;  1DNK A;  5A7J A;  3N9V A;  1BIX A;  5HT2 A;  1ATN D;  4F1R A;  3G8V A;  2VOA A;  4CML A;  1SR4 B;  4IEM A;  4PUQ A;  3CJC D;  2A40 B;  1DE8 A;  3G3Y A;  5INP A;  5J8N A;  3MTC A;  4B5I A;  5CFE A;  2JC4 A;  1I9Y A;  1AKO A;  1VYB A;  2V0R A;  4F1H B;  5INN A;  5J42 A;  4QHD A;  4RUW A;  3NR8 A;  3I48 A;  5INL A;  4L1Z A;  3NGO A;  4B5J A;  5INM A;  2A42 B;  5DFJ A;  2ISI A;  4L21 A;  3G0A A;  5J3Z A;  3DNI A;  3I5V A;  5DV2 A;  3GA6 A;  1HD7 A;  3L1W A;  2DNJ A;  4JG3 A;  2JC5 A;  4L20 A;  3W3D B;  2O3C A;  4A9C A;  2EI9 A;  1DE9 A;  2J63 A;  2DDT A;  4CMN A;  5J3P A;  4B5F A;  4FVA A;  3G38 A;  5CFG A;  1WDU A;  2F1N A;  3MPR A;  3FZI A;  4GZ1 A;  4GEW A;  2DDR A;  5DFF A;  4GYZ A;  5DFI A;  5INQ A;  2O3H A;  5EWT A;  4B5H A;  5A7I A;  4C1R A;  5DV4 A;  3G00 A;  3K55 A;  3W2Y A;  2UYR X;  2DDS A;  3TEB A;  5DG0 A;  4L1Y A;  4QH9 A;  1Y21 A;  1DEW A;  4GZ2 A;  4B5M A;  4GZ0 A;  5INO A;  2D1K B;  3G1K A;  3W2X A;  3G4T A;  4F1H A;  2IMQ X;  2A41 B;  4B5G A;  3NGQ A;  4F1I A;  1ZWX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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