5DM6K

Crystal structure of the 50s ribosomal subunit from deinococcus radiodurans
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
113
structure length
113
Chain Sequence
HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L1
publication title Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A.
pubmed doi rcsb
total genus 32
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2015-09-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 5dm6K00
4U67K 4IOAK 3CF5K 2ZJQK 4WFAK 5GAEO 5H1SP 2ZJRK 4IO9K 5DM7K 3PIPK 5GAGO 5MLCP 5JVGK 5HL7K 5GADO 1GD8A 4WFBK 4UY8N 5DM6K 3PIOK 3J7ZN 4WFNK 4WF9K 2CQMA 2ZJPK 4IOCK 5GAHO 5JVHK 4WCEK 3DLLK
chains in the Genus database with same CATH superfamily
4U67K 4IOAK 3CF5K 2ZJQK 4WFAK 5GAEO 5H1SP 2ZJRK 4IO9K 5DM7K 3PIPK 5GAGO 5MLCP 5JVGK 5HL7K 5GADO 1GD8A 4WFBK 4UY8N 5DM6K 3PIOK 3J7ZN 4WFNK 4WF9K 2CQMA 2ZJPK 4IOCK 5GAHO 5JVHK 4WCEK 3DLLK
chains in the Genus database with same CATH topology
4U67K 4IOAK 3CF5K 2ZJQK 4WFAK 5GAEO 5H1SP 2ZJRK 4IO9K 5DM7K 3PIPK 5GAGO 5MLCP 5JVGK 5HL7K 5GADO 1GD8A 4WFBK 4UY8N 5DM6K 3PIOK 3J7ZN 4WFNK 4WF9K 2CQMA 2ZJPK 4IOCK 5GAHO 5JVHK 4WCEK 3DLLK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U67 K;  4IOA K;  3CF5 K;  2ZJQ K;  4WFA K;  5GAE O;  5H1S P;  2ZJR K;  4IO9 K;  5DM7 K;  3PIP K;  5GAG O;  5MLC P;  5JVG K;  5HL7 K;  5GAD O;  1GD8 A;  4WFB K;  4UY8 N;  5DM6 K;  3PIO K;  3J7Z N;  4WFN K;  4WF9 K;  2CQM A;  2ZJP K;  4IOC K;  5GAH O;  5JVH K;  4WCE K;  3DLL K; 
#chains in the Genus database with same CATH topology
 4U67 K;  4IOA K;  3CF5 K;  2ZJQ K;  4WFA K;  5GAE O;  5H1S P;  2ZJR K;  4IO9 K;  5DM7 K;  3PIP K;  5GAG O;  5MLC P;  5JVG K;  5HL7 K;  5GAD O;  1GD8 A;  4WFB K;  4UY8 N;  5DM6 K;  3PIO K;  3J7Z N;  4WFN K;  4WF9 K;  2CQM A;  2ZJP K;  4IOC K;  5GAH O;  5JVH K;  4WCE K;  3DLL K; 
#chains in the Genus database with same CATH homology
 4U67 K;  4IOA K;  3CF5 K;  2ZJQ K;  4WFA K;  5GAE O;  5H1S P;  2ZJR K;  4IO9 K;  5DM7 K;  3PIP K;  5GAG O;  5MLC P;  5JVG K;  5HL7 K;  5GAD O;  1GD8 A;  4WFB K;  4UY8 N;  5DM6 K;  3PIO K;  3J7Z N;  4WFN K;  4WF9 K;  2CQM A;  2ZJP K;  4IOC K;  5GAH O;  5JVH K;  4WCE K;  3DLL K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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