5DNXA

Crystal structure of igpd from pyrococcus furiosus in complex with (r)-c348
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
176
structure length
176
Chain Sequence
b'MRRTTKETDIIVEIGKKGEIKTNDLILDHMLTAFAFYLGKDMRITATYDLRHHLWEDIGITLGEALRENLPEKFTRFGNAIMPMDDALVLVSVDISNRPYANVDVNIKDAEEGFAVSLLKEFVWGLARGLRATIHIKQLSGENAHHIVEAAFKGLGMALRVATKESERVESTKGVL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Pyrococcus furiosus
molecule tags Lyase
total genus 60
structure length 176
sequence length 176
chains with identical sequence B, C
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnxA02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5dnxA01
4GQUA 5EL9A 1RHYA 4MU4A 4MU3A 2AE8A 4LPFA 4QNJA 5ELWA 4MU0A 5EKWA 4LOMA 4QNKA 5DNXA 4MU1A 2F1DA 5DNLA
chains in the Genus database with same CATH superfamily
4USMA 1XNQE 3PS3A 3K17A 4KHPE 5K36D 4DR3E 1YHCA 2O1UA 5K36C 1KVKA 1Y4SA 3F0NA 2X7IA 3M85D 3HULA 4GKKE 3WU5A 1HNXE 1NHHA 2CVEA 5EKWA 4JI3I 1OJ4A 4DV2I 2PNLA 2PO2A 5LMNI 1ELOA 1UDSA 4DV3E 2C39B 1E3HA 1HNZI 2UU9I 2UUAI 2O1WA 4AIMA 3K85A 1B63A 4DV5E 5DRQA 2LJPA 4DR4I 2A2DA 3PYFA 4JI6I 4JV5I 1Z0CA 2GS8A 3T1HE 4XTJA 1Z0WA 5C0XB 5IT9Q 4BA1B 1XXEA 4IS9A 5A2QC 4MU4A 3QT5A 2AE8A 2PO0B 4YHHI 1UDOA 5DRRA 4IFDD 1I94E 4FW6A 2UXDI 5C0XF 2Z5BA 1J5EI 4DV0I 2V2ZA 1N34I 4URLA 1IBKE 1HNWI 4IFDC 2JEBB 4B3RE 2C38A 5C0XE 1ZM9A 3Q6MA 2EFGA 3GLLA 4B3ME 1ZXMA 2ZBKB 1NHJA 3J7AM 2VESA 4NBQA 4AM3A 1HK7A 3PS2A 5FLXC 4U3BA 5IWAI 2VF3A 3B4TA 4JI8E 5JEAB 4LF6I 4OZEA 1R6MA 2BA0G 4DR5E 4LCGA 2R42A 1Z0EA 4OO1A 4NXNI 4DV6E 4RPFA 5JEAF 2PO1B 3QT8A 4DR2I 5GMEA 4DV7I 2DEJA 4X65E 4DV4I 3P06A 1FKAE 4LF4E 4BA2B 5JEAE 2HHHI 4LFCI 1Z0GA 1Z5BA 4HACB 4JI7I 3ZM7A 3ZKDA 3HJCA 1XNRE 3OTOI 1OYSA 3V2UC 4FW5A 1U2RA 2NN6D 1RR9A 2JT2A 2IOPA 4LFAI 3LPSA 4HXZA 4DUZE 4DR7E 4DV1E 4ZVIA 4B3SE 2VQFE 2NN6C 3QT6A 2Z5CA 4M1KA 2ZM6I 3M7NG 4ED4A 1B62A 2F4VE 1D6TA 4PRVA 4JI2E 2C37B 4JI5E 1HR0I 4YY3E 4LF8E 1MU5A 2UXBI 4AQYE 2IESA 3PYEA 5DROA 2R3VA 3P3CA 2O3ZA 4OX9I 1XNQI 4HYMA 2VQEE 1KIJA 3J80C 4K0KI 1UDNA 1N36I 4DU7A 2UUCE 4GKKI 4IFDA 3P3GA 4MU3A 3PYDA 4DPUA 1Y5YA 2JEAA 1XMOI 1OYRA 2A2CA 4LF5E 1MX0A 3JAMC 1QZRA 4X66E 4MU0A 2C39A 4NXMI 1N0VC 4IZJD 2HKJA 2O1TA 2WNRA 2HFUA 4KQVA 2WP8A 4JI3E 4LCFA 2V34A 2BA1D 1ZXNA 4DV5I 4DV2E 2JE6B 3T1HI 2PO2B 5LMNE 3PS1A 3ZZTA 4IZKA 3U1YA 1HNZE 4USKA 2UU9E 2BR2A 2UUAE 3L7ZB 1RHYA 4DR1I 4OKGA 2Q2EB 4MYTA 4DR4E 1YH8A 1Z0BA 4WUDA 4DUYI 4JV5E 2XEXA 1ZM2A 3H4LA 4DR6E 4Z7CA 4FW4A 1KTVA 4EMDA 1H73A 2CG9A 4UTGA 3M6AA 2UXCE 2JEBA 2WW4A 3ZKBA 4JYAE 4LFBI 4R1FA 3J81C 4YHHE 3P76A 1FWLA 4MDTA 4B3MI 1USUA 1H74A 3B78A 2Z5BB 4P7AA 4DV0E 2NN6A 1MG7A 1IBMI 2Z5EA 1Z0TA 1N33I 4JI8I 5C0XD 1ZM3A 3M85G 1USVA 1N0UA 5ELWA 4MQYA 4X62I 4LF9I 5C0XC 2J7KA 1E3PA 2V2QA 4DXLA 2HFSA 1EI1A 4X64I 3GONA 4LF7I 5IWAE 5LL6R 2PNZA 4JI1I 1Z5CA 3GCMA 1XMQE 4MYUA 4LF4I 5DNXA 4FN5A 4NXNE 4OO1B 1PVGA 4HACA 5A2QQ 2IERA 4I3HA 5BR8I 4DPTA 2DEIA 1XNRI 4FW7A 1R6LA 5L3JA 4DV7E 3T1YE 4B3TI 4OO1F 1FWKA 4FWGA 4DV4E 2OI2A 5JEAD 4JI4E 4DUZI 2HHHE 4LFCE 1XHKA 1EA6A 4DR7I 4B3SI 3Q6NA 1Z0VA 4HY1A 2VQFI 4J3DA 5K36B 4OO1E 5JEAC 4DU8A 2IOQA 2O1VA 1S16A 1FJGE 1IBLI 5LMUI 4P52A 1ZM4A 4IZJA 2F1DA 4LF8I 4LFAE 4JG4A 3P3EA 4JI0E 5K36F 3K1JA 4AIDA 5FLXQ 1Y4UA 3B8HA 2Z5CB 4KHPI 5IT9C 4U3DA 2ZM6E 4GKJE 5K36E 3CDIA 4FW9A 4DR3I 2UUBE 1H72C 2AJ4A 1N32E 1HR0E 3HKMA 5DNLA 1P42A 2CGEA 2E5LE 2UXBE 1HNXI 4LOMA 4OX9E 2CZ9A 1Y60A 3PRYA 4DPYA 3WU4A 3D4JA 4DV3I 4LF5I 1S4EA 2GO4A 3DD6A 3Q1QA 4X66I 4K0KE 3NZKA 4ISAA 5FWKA 1N36E 2BA0D 2HKEA 4DPWA 3CWVA 4IFDB 4LPFA 1WUUA 4WUBA 2UUCI 2JEAB 1XMOE 1UDQA 2JE6A 2GQ0A 1FNMA 5C0XA 4BA1A 4QNKA 4NXME 4IFDF 2PO0A 4WUCA 2WNRB 3U1KA 2GO3A 1PKPA 3L7ZA 4QNJA 2WP8B 4JI6E 1I94I 4IFDE 3WU3A 2HK3A 4DPXA 4MU1A 3ZZUA 1Z59A 1IBKI 4DR6I 2BV3A 4IZKB 1K47A 4B3RI 2X36A 2BR2B 2UXCI 4JYAI 4DR1E 3J80Q 5DRPA 5GMDA 2UXDE 3UHMA 3ZZ0A 4DUYE 3M7ND 4GQUA 1J5EE 1N34E 3GMEA 3V5RA 1HNWE 2BM1A 1UEKA 5JEAA 2C38B 4PU9A 4DR5I 1NHIA 2PNMA 2E1RA 1VI7A 4LFBE 1KKHA 1BKNA 3JAMQ 2V8PA 3LTOA 4Z7YA 4DV6I 1OYPA 2J65A 2PO1A 4LCHA 2NN6B 1A6FA 1IBME 1H7SA 4LF6E 4X65I 1N33E 1Y6ZA 4BA2A 1XMQI 1NZ0A 1FI4A 3QT7A 4X62E 4PRXA 1Z5AA 2BA1G 4LF9E 1RREA 2NN6F 3B82A 1VISA 3KRNA 4X64E 4DR2E 2V2VA 4LF7E 3PYGA 3CDJA 4JI1E 4FWHA 2NN6E 2PNZB 3T1YI 3WU6A 4DV1I 5EL9A 4JI4I 4JI7E 3OTOE 5K36A 5BR8E 4FWDA 2NPFA 3J81Q 2F4VI 2C37A 4JI2I 4JI5I 3LNUA 1FJGI 4YY3I 4B3TE 4AQYI 4JI0I 1PIEA 4OO1D 4UT4A 4FW3A 2BM0A 2ZITA 3H1CA 4GKJI 4N3OA 2VQEI 1IBLE 5LMUE 2UUBI 4OO1C 4IZJB 1N32I 1H7UA 2HK2A 3J7AG 1DARA 2E5LI
chains in the Genus database with same CATH topology
4GQUA 5EL9A 1RHYA 4MU4A 4MU3A 2AE8A 4LPFA 4QNJA 5ELWA 4MU0A 5EKWA 4LOMA 4QNKA 5DNXA 4MU1A 2F1DA 5DNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  5EL9 A;  1RHY A;  4MU4 A;  4MU3 A;  2AE8 A;  4LPF A;  4QNJ A;  5ELW A;  4MU0 A;  5EKW A;  4LOM A;  4QNK A;  5DNX A;  4MU1 A;  2F1D A;  5DNL A; 
#chains in the Genus database with same CATH topology
 4USM A;  1XNQ E;  3PS3 A;  3K17 A;  4KHP E;  5K36 D;  4DR3 E;  1YHC A;  2O1U A;  5K36 C;  1KVK A;  1Y4S A;  3F0N A;  2X7I A;  3M85 D;  3HUL A;  4GKK E;  3WU5 A;  1HNX E;  1NHH A;  2CVE A;  5EKW A;  4JI3 I;  1OJ4 A;  4DV2 I;  2PNL A;  2PO2 A;  5LMN I;  1ELO A;  1UDS A;  4DV3 E;  2C39 B;  1E3H A;  1HNZ I;  2UU9 I;  2UUA I;  2O1W A;  4AIM A;  3K85 A;  1B63 A;  4DV5 E;  5DRQ A;  2LJP A;  4DR4 I;  2A2D A;  3PYF A;  4JI6 I;  4JV5 I;  1Z0C A;  2GS8 A;  3T1H E;  4XTJ A;  1Z0W A;  5C0X B;  5IT9 Q;  4BA1 B;  1XXE A;  4IS9 A;  5A2Q C;  4MU4 A;  3QT5 A;  2AE8 A;  2PO0 B;  4YHH I;  1UDO A;  5DRR A;  4IFD D;  1I94 E;  4FW6 A;  2UXD I;  5C0X F;  2Z5B A;  1J5E I;  4DV0 I;  2V2Z A;  1N34 I;  4URL A;  1IBK E;  1HNW I;  4IFD C;  2JEB B;  4B3R E;  2C38 A;  5C0X E;  1ZM9 A;  3Q6M A;  2EFG A;  3GLL A;  4B3M E;  1ZXM A;  2ZBK B;  1NHJ A;  3J7A M;  2VES A;  4NBQ A;  4AM3 A;  1HK7 A;  3PS2 A;  5FLX C;  4U3B A;  5IWA I;  2VF3 A;  3B4T A;  4JI8 E;  5JEA B;  4LF6 I;  4OZE A;  1R6M A;  2BA0 G;  4DR5 E;  4LCG A;  2R42 A;  1Z0E A;  4OO1 A;  4NXN I;  4DV6 E;  4RPF A;  5JEA F;  2PO1 B;  3QT8 A;  4DR2 I;  5GME A;  4DV7 I;  2DEJ A;  4X65 E;  4DV4 I;  3P06 A;  1FKA E;  4LF4 E;  4BA2 B;  5JEA E;  2HHH I;  4LFC I;  1Z0G A;  1Z5B A;  4HAC B;  4JI7 I;  3ZM7 A;  3ZKD A;  3HJC A;  1XNR E;  3OTO I;  1OYS A;  3V2U C;  4FW5 A;  1U2R A;  2NN6 D;  1RR9 A;  2JT2 A;  2IOP A;  4LFA I;  3LPS A;  4HXZ A;  4DUZ E;  4DR7 E;  4DV1 E;  4ZVI A;  4B3S E;  2VQF E;  2NN6 C;  3QT6 A;  2Z5C A;  4M1K A;  2ZM6 I;  3M7N G;  4ED4 A;  1B62 A;  2F4V E;  1D6T A;  4PRV A;  4JI2 E;  2C37 B;  4JI5 E;  1HR0 I;  4YY3 E;  4LF8 E;  1MU5 A;  2UXB I;  4AQY E;  2IES A;  3PYE A;  5DRO A;  2R3V A;  3P3C A;  2O3Z A;  4OX9 I;  1XNQ I;  4HYM A;  2VQE E;  1KIJ A;  3J80 C;  4K0K I;  1UDN A;  1N36 I;  4DU7 A;  2UUC E;  4GKK I;  4IFD A;  3P3G A;  4MU3 A;  3PYD A;  4DPU A;  1Y5Y A;  2JEA A;  1XMO I;  1OYR A;  2A2C A;  4LF5 E;  1MX0 A;  3JAM C;  1QZR A;  4X66 E;  4MU0 A;  2C39 A;  4NXM I;  1N0V C;  4IZJ D;  2HKJ A;  2O1T A;  2WNR A;  2HFU A;  4KQV A;  2WP8 A;  4JI3 E;  4LCF A;  2V34 A;  2BA1 D;  1ZXN A;  4DV5 I;  4DV2 E;  2JE6 B;  3T1H I;  2PO2 B;  5LMN E;  3PS1 A;  3ZZT A;  4IZK A;  3U1Y A;  1HNZ E;  4USK A;  2UU9 E;  2BR2 A;  2UUA E;  3L7Z B;  1RHY A;  4DR1 I;  4OKG A;  2Q2E B;  4MYT A;  4DR4 E;  1YH8 A;  1Z0B A;  4WUD A;  4DUY I;  4JV5 E;  2XEX A;  1ZM2 A;  3H4L A;  4DR6 E;  4Z7C A;  4FW4 A;  1KTV A;  4EMD A;  1H73 A;  2CG9 A;  4UTG A;  3M6A A;  2UXC E;  2JEB A;  2WW4 A;  3ZKB A;  4JYA E;  4LFB I;  4R1F A;  3J81 C;  4YHH E;  3P76 A;  1FWL A;  4MDT A;  4B3M I;  1USU A;  1H74 A;  3B78 A;  2Z5B B;  4P7A A;  4DV0 E;  2NN6 A;  1MG7 A;  1IBM I;  2Z5E A;  1Z0T A;  1N33 I;  4JI8 I;  5C0X D;  1ZM3 A;  3M85 G;  1USV A;  1N0U A;  5ELW A;  4MQY A;  4X62 I;  4LF9 I;  5C0X C;  2J7K A;  1E3P A;  2V2Q A;  4DXL A;  2HFS A;  1EI1 A;  4X64 I;  3GON A;  4LF7 I;  5IWA E;  5LL6 R;  2PNZ A;  4JI1 I;  1Z5C A;  3GCM A;  1XMQ E;  4MYU A;  4LF4 I;  5DNX A;  4FN5 A;  4NXN E;  4OO1 B;  1PVG A;  4HAC A;  5A2Q Q;  2IER A;  4I3H A;  5BR8 I;  4DPT A;  2DEI A;  1XNR I;  4FW7 A;  1R6L A;  5L3J A;  4DV7 E;  3T1Y E;  4B3T I;  4OO1 F;  1FWK A;  4FWG A;  4DV4 E;  2OI2 A;  5JEA D;  4JI4 E;  4DUZ I;  2HHH E;  4LFC E;  1XHK A;  1EA6 A;  4DR7 I;  4B3S I;  3Q6N A;  1Z0V A;  4HY1 A;  2VQF I;  4J3D A;  5K36 B;  4OO1 E;  5JEA C;  4DU8 A;  2IOQ A;  2O1V A;  1S16 A;  1FJG E;  1IBL I;  5LMU I;  4P52 A;  1ZM4 A;  4IZJ A;  2F1D A;  4LF8 I;  4LFA E;  4JG4 A;  3P3E A;  4JI0 E;  5K36 F;  3K1J A;  4AID A;  5FLX Q;  1Y4U A;  3B8H A;  2Z5C B;  4KHP I;  5IT9 C;  4U3D A;  2ZM6 E;  4GKJ E;  5K36 E;  3CDI A;  4FW9 A;  4DR3 I;  2UUB E;  1H72 C;  2AJ4 A;  1N32 E;  1HR0 E;  3HKM A;  5DNL A;  1P42 A;  2CGE A;  2E5L E;  2UXB E;  1HNX I;  4LOM A;  4OX9 E;  2CZ9 A;  1Y60 A;  3PRY A;  4DPY A;  3WU4 A;  3D4J A;  4DV3 I;  4LF5 I;  1S4E A;  2GO4 A;  3DD6 A;  3Q1Q A;  4X66 I;  4K0K E;  3NZK A;  4ISA A;  5FWK A;  1N36 E;  2BA0 D;  2HKE A;  4DPW A;  3CWV A;  4IFD B;  4LPF A;  1WUU A;  4WUB A;  2UUC I;  2JEA B;  1XMO E;  1UDQ A;  2JE6 A;  2GQ0 A;  1FNM A;  5C0X A;  4BA1 A;  4QNK A;  4NXM E;  4IFD F;  2PO0 A;  4WUC A;  2WNR B;  3U1K A;  2GO3 A;  1PKP A;  3L7Z A;  4QNJ A;  2WP8 B;  4JI6 E;  1I94 I;  4IFD E;  3WU3 A;  2HK3 A;  4DPX A;  4MU1 A;  3ZZU A;  1Z59 A;  1IBK I;  4DR6 I;  2BV3 A;  4IZK B;  1K47 A;  4B3R I;  2X36 A;  2BR2 B;  2UXC I;  4JYA I;  4DR1 E;  3J80 Q;  5DRP A;  5GMD A;  2UXD E;  3UHM A;  3ZZ0 A;  4DUY E;  3M7N D;  4GQU A;  1J5E E;  1N34 E;  3GME A;  3V5R A;  1HNW E;  2BM1 A;  1UEK A;  5JEA A;  2C38 B;  4PU9 A;  4DR5 I;  1NHI A;  2PNM A;  2E1R A;  1VI7 A;  4LFB E;  1KKH A;  1BKN A;  3JAM Q;  2V8P A;  3LTO A;  4Z7Y A;  4DV6 I;  1OYP A;  2J65 A;  2PO1 A;  4LCH A;  2NN6 B;  1A6F A;  1IBM E;  1H7S A;  4LF6 E;  4X65 I;  1N33 E;  1Y6Z A;  4BA2 A;  1XMQ I;  1NZ0 A;  1FI4 A;  3QT7 A;  4X62 E;  4PRX A;  1Z5A A;  2BA1 G;  4LF9 E;  1RRE A;  2NN6 F;  3B82 A;  1VIS A;  3KRN A;  4X64 E;  4DR2 E;  2V2V A;  4LF7 E;  3PYG A;  3CDJ A;  4JI1 E;  4FWH A;  2NN6 E;  2PNZ B;  3T1Y I;  3WU6 A;  4DV1 I;  5EL9 A;  4JI4 I;  4JI7 E;  3OTO E;  5K36 A;  5BR8 E;  4FWD A;  2NPF A;  3J81 Q;  2F4V I;  2C37 A;  4JI2 I;  4JI5 I;  3LNU A;  1FJG I;  4YY3 I;  4B3T E;  4AQY I;  4JI0 I;  1PIE A;  4OO1 D;  4UT4 A;  4FW3 A;  2BM0 A;  2ZIT A;  3H1C A;  4GKJ I;  4N3O A;  2VQE I;  1IBL E;  5LMU E;  2UUB I;  4OO1 C;  4IZJ B;  1N32 I;  1H7U A;  2HK2 A;  3J7A G;  1DAR A;  2E5L I; 
#chains in the Genus database with same CATH homology
 4GQU A;  5EL9 A;  1RHY A;  4MU4 A;  4MU3 A;  2AE8 A;  4LPF A;  4QNJ A;  5ELW A;  4MU0 A;  5EKW A;  4LOM A;  4QNK A;  5DNX A;  4MU1 A;  2F1D A;  5DNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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