5DROA

Structure of the aquifex aeolicus lpxc/lpc-011 complex
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
267
structure length
267
Chain Sequence
GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Aquifex aeolicus (strain vf5)
molecule tags Hydrolase/hydrolase inhibitor
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 90
structure length 267
sequence length 267
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5droA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5droA02
5DRPA 2JT2A 3UHMA 4OKGA 3P3GA 3U1YA 1YHCA 3P3EA 3NZKA 4ISAA 2O3ZA 4FW6A 4U3BA 4FW7A 3PS1A 4LCHA 1XXEA 2GO3A 2VESA 4FW5A 4MQYA 4MDTA 4J3DA 5DROA 1P42A 4U3DA 4LCFA 4FW4A 2J65A 5DRRA 3P3CA 2IERA 3PS2A 4OZEA 4FW3A 4IS9A 1YH8A 3P76A 2IESA 4LCGA 5DRQA 2GO4A 3PS3A
chains in the Genus database with same CATH superfamily
2VQFE 2WNRB 2UU9I 4YY3E 2NN6E 4JI5I 4JYAI 4ISAA 4B3SE 2HK2A 4DR5I 5EKWA 1N0UA 5FWKA 3PRYA 4QNJA 2ZM6E 4LFBI 4IFDB 3B8HA 2HFSA 1N33E 1FWLA 1Y5YA 1KVKA 1D6TA 4LF8E 4OO1B 2HHHE 3PS3A 2XEXA 1KKHA 4JI0E 1N34I 4DV3E 4LFCE 2C37A 4DU8A 4JI2I 1BKNA 2V2VA 2PO1A 1Z0WA 4OX9I 3QT7A 2J7KA 2VQEI 4K0KI 4JI4E 4M1KA 1VISA 1MX0A 4GKJI 3QT5A 4DPTA 3V2UC 1IBLI 4DV0I 4LF5E 3D4JA 5L3JA 4DV1E 1HNWE 1XNQI 4HYMA 1N36I 1IBMI 3OTOI 4JV5E 2C39A 2O1TA 1XHKA 1WUUA 4Z7CA 2C38B 5K36B 1H7UA 3NZKA 1HNZI 3V5RA 2HKEA 4LF4E 2Z5BA 4MYTA 5DNXA 2F4VI 1OYSA 5JEAE 3GONA 4ZVIA 4MYUA 4I3HA 5C0XE 4DV7I 2PO2B 4P52A 3LNUA 1Y60A 5FLXC 4DV2I 3U1KA 4DR3E 5C0XC 1QZRA 1A6FA 4MU0A 5JEAA 2O1UA 4OZEA 1ZM9A 5LL6R 4X62I 2UXDE 2Q2EB 1J5EI 2JEAB 4DR1I 1N32E 3ZZ0A 1RREA 5IWAE 4IFDE 4MU3A 4X65E 4FWGA 2UXBI 1UDSA 4RPFA 1B62A 2V2QA 3KRNA 1Z0CA 2NN6A 1P42A 3T1HE 1HK7A 1UDNA 1E3HA 4DR2I 4AIDA 3GMEA 4YY3I 4JYAE 1YH8A 3K17A 2IESA 4DR4I 1OJ4A 2WP8B 4DPXA 4DR7E 3PYFA 2BR2A 2UUCI 4DUZI 4DUYI 3K1JA 4LFBE 4JI7E 1NHJA 4X66I 3PS1A 1Z0EA 1N0VC 2JEBB 2R42A 5K36A 1K47A 4LF9I 2UXCI 1Z0VA 4JI8E 2WNRA 2PO2A 2Z5EA 3HULA 2PNZB 3L7ZA 3GLLA 4B3TI 1HR0I 3PYDA 4GKJE 4URLA 3Q6NA 1ZM2A 4DV0E 4DV1I 1R6MA 2AE8A 1FNMA 1HNWI 2X36A 5LMNI 2CG9A 4OO1A 4JI3E 4KQVA 1XNRE 4NXME 1B63A 4DV7E 1YHCA 2UU9E 1S16A 4B3RI 3CWVA 4LFAE 2WP8A 4BA2A 4MQYA 1Z5BA 2BA0D 1I94E 4N3OA 4LF7E 4X62E 1J5EE 4LF6I 1HNXE 3P3CA 4AIMA 3Q1QA 4YHHE 1Z59A 1USUA 2JE6A 1MG7A 5IWAI 5JEAF 3GCMA 3PYGA 4DXLA 3H1CA 3LTOA 4EMDA 3L7ZB 1Z0TA 1FJGI 3T1HI 3PYEA 4FW7A 1FWKA 3CDJA 5IT9C 5A2QQ 2VESA 4FW5A 4DV5I 4HACA 1PIEA 5JEAB 2VQEE 4K0KE 1NZ0A 4DR6E 2X7IA 4JI6E 4OO1F 2NPFA 4BA2B 4USMA 4WUDA 5JEAD 4LF5I 1OYPA 2NN6C 3OTOE 3M7NG 1UEKA 4X66E 4JV5I 2V2ZA 4IZKA 2JEBA 4QNKA 4JI1I 5K36C 1FKAE 4DV6E 3M85G 4JI8I 2F1DA 4FN5A 3QT6A 3B4TA 4XTJA 2CZ9A 3H4LA 4NXNI 4WUCA 3JAMQ 4HACB 4GKKE 5K36F 1ELOA 4USKA 4DR3I 2E1RA 3P06A 2BM1A 4B3ME 1H73A 1NHHA 2O3ZA 3JAMC 4MU1A 3QT8A 4FWDA 4IZJB 1U2RA 2UUAE 2O1WA 4OO1C 5GMEA 1ZXNA 5K36D 3CDIA 2J65A 2GQ0A 1EI1A 4KHPE 3PS2A 2PNZA 4DR2E 4LCGA 2HFUA 1PKPA 2LJPA 4B3RE 4DR4E 1Z5AA 3UHMA 4LFAI 5JEAC 4DR7I 2CVEA 3P3EA 1I94I 2UUCE 4DUZE 4LF7I 1XMQE 4ED4A 4DUYE 3ZZUA 4UT4A 1RR9A 2Z5CB 4LF6E 2ZITA 4BA1B 4IZKB 2AJ4A 5DROA 1N33I 4PU9A 4LF8I 4OO1D 2HHHI 4AM3A 2HKJA 3T1YI 2E5LI 4JI0I 2GO4A 4DV3I 3M85D 3M6AA 5DRPA 2UUBI 4JI2E 4HY1A 3K85A 1ZM4A 4B3TE 4DR6I 4JI6I 4X64E 4U3BA 5BR8E 4NBQA 2NN6D 5GMDA 1IBLE 2BA0G 4Z7YA 4JG4A 4P7AA 4IFDA 4AQYI 1VI7A 1MU5A 3ZKBA 2PO0A 1IBME 4PRVA 4DV4I 3B78A 1IBKE 4DPUA 4IS9A 3LPSA 5LMUI 5DRQA 2CGEA 5LMNE 4JI1E 4FW9A 1XMOI 1UDOA 5A2QC 3B82A 1S4EA 4DV6I 1HNZE 2C37B 2BA1D 4LF4I 1Y4SA 3ZM7A 2NN6F 1Z5CA 1ZXMA 1OYRA 2VQFI 2HK3A 1USVA 1XXEA 4JI5E 4GKKI 4J3DA 2ZBKB 4MU4A 5C0XB 4B3SI 2BV3A 4DR5E 2OI2A 4GQUA 2ZM6I 2Z5CA 3J81Q 1HNXI 5K36E 4YHHI 2EFGA 1NHIA 4R1FA 1N32I 3M7ND 3HKMA 3J80C 3P3GA 2UUAI 4UTGA 3WU3A 2C39B 3Q6MA 5DNLA 4X65I 1Z0GA 2VF3A 1N34E 4LPFA 4LFCI 4KHPI 3J7AG 1E3PA 1FJGE 4LCHA 4MDTA 2PO1B 4OX9E 4DV5E 1DARA 3ZKDA 3HJCA 2IOPA 1KIJA 1EA6A 4PRXA 2IERA 4JI4I 5ELWA 4DPWA 4IFDF 1XMQI 1Z0BA 3J80Q 4FWHA 3DD6A 4WUBA 1XNQE 1N36E 5EL9A 3WU4A 4OO1E 4HXZA 2PNMA 2V34A 2WW4A 4JI7I 1FI4A 5C0XF 4IZJD 2A2DA 4IZJA 1PVGA 1H74A 2GO3A 1R6LA 3T1YE 2E5LE 4LF9E 4U3DA 4LCFA 2UXCE 3F0NA 5FLXQ 2F4VE 2BA1G 1RHYA 2UUBE 4DPYA 4IFDD 1H72C 4LOMA 3ZZTA 4NXNE 4FW3A 5IT9Q 3J7AM 1HR0E 1ZM3A 4DV2E 3WU5A 2DEIA 2JT2A 4X64I 2V8PA 4OKGA 5C0XA 1Y6ZA 5C0XD 3U1YA 4B3MI 2PNLA 5BR8I 2BR2B 1UDQA 4BA1A 2UXDI 2JEAA 4FW6A 4AQYE 3J81C 2GS8A 2IOQA 1H7SA 2PO0B 2JE6B 4DR1E 2R3VA 4DV4E 1IBKI 1KTVA 2DEJA 5LMUE 4FW4A 3WU6A 2C38A 5DRRA 2UXBE 1XMOE 4DU7A 4JI3I 1XNRI 2Z5BB 2NN6B 3P76A 4NXMI 2A2CA 4IFDC 1Y4UA 2BM0A 2O1VA
chains in the Genus database with same CATH topology
5DRPA 2JT2A 3UHMA 4OKGA 3P3GA 3U1YA 1YHCA 3P3EA 3NZKA 4ISAA 2O3ZA 4FW6A 4U3BA 4FW7A 3PS1A 4LCHA 1XXEA 2GO3A 2VESA 4FW5A 4MQYA 4MDTA 4J3DA 5DROA 1P42A 4U3DA 4LCFA 4FW4A 2J65A 5DRRA 3P3CA 2IERA 3PS2A 4OZEA 4FW3A 4IS9A 1YH8A 3P76A 2IESA 4LCGA 5DRQA 2GO4A 3PS3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DRP A;  2JT2 A;  3UHM A;  4OKG A;  3P3G A;  3U1Y A;  1YHC A;  3P3E A;  3NZK A;  4ISA A;  2O3Z A;  4FW6 A;  4U3B A;  4FW7 A;  3PS1 A;  4LCH A;  1XXE A;  2GO3 A;  2VES A;  4FW5 A;  4MQY A;  4MDT A;  4J3D A;  5DRO A;  1P42 A;  4U3D A;  4LCF A;  4FW4 A;  2J65 A;  5DRR A;  3P3C A;  2IER A;  3PS2 A;  4OZE A;  4FW3 A;  4IS9 A;  1YH8 A;  3P76 A;  2IES A;  4LCG A;  5DRQ A;  2GO4 A;  3PS3 A; 
#chains in the Genus database with same CATH topology
 2VQF E;  2WNR B;  2UU9 I;  4YY3 E;  2NN6 E;  4JI5 I;  4JYA I;  4ISA A;  4B3S E;  2HK2 A;  4DR5 I;  5EKW A;  1N0U A;  5FWK A;  3PRY A;  4QNJ A;  2ZM6 E;  4LFB I;  4IFD B;  3B8H A;  2HFS A;  1N33 E;  1FWL A;  1Y5Y A;  1KVK A;  1D6T A;  4LF8 E;  4OO1 B;  2HHH E;  3PS3 A;  2XEX A;  1KKH A;  4JI0 E;  1N34 I;  4DV3 E;  4LFC E;  2C37 A;  4DU8 A;  4JI2 I;  1BKN A;  2V2V A;  2PO1 A;  1Z0W A;  4OX9 I;  3QT7 A;  2J7K A;  2VQE I;  4K0K I;  4JI4 E;  4M1K A;  1VIS A;  1MX0 A;  4GKJ I;  3QT5 A;  4DPT A;  3V2U C;  1IBL I;  4DV0 I;  4LF5 E;  3D4J A;  5L3J A;  4DV1 E;  1HNW E;  1XNQ I;  4HYM A;  1N36 I;  1IBM I;  3OTO I;  4JV5 E;  2C39 A;  2O1T A;  1XHK A;  1WUU A;  4Z7C A;  2C38 B;  5K36 B;  1H7U A;  3NZK A;  1HNZ I;  3V5R A;  2HKE A;  4LF4 E;  2Z5B A;  4MYT A;  5DNX A;  2F4V I;  1OYS A;  5JEA E;  3GON A;  4ZVI A;  4MYU A;  4I3H A;  5C0X E;  4DV7 I;  2PO2 B;  4P52 A;  3LNU A;  1Y60 A;  5FLX C;  4DV2 I;  3U1K A;  4DR3 E;  5C0X C;  1QZR A;  1A6F A;  4MU0 A;  5JEA A;  2O1U A;  4OZE A;  1ZM9 A;  5LL6 R;  4X62 I;  2UXD E;  2Q2E B;  1J5E I;  2JEA B;  4DR1 I;  1N32 E;  3ZZ0 A;  1RRE A;  5IWA E;  4IFD E;  4MU3 A;  4X65 E;  4FWG A;  2UXB I;  1UDS A;  4RPF A;  1B62 A;  2V2Q A;  3KRN A;  1Z0C A;  2NN6 A;  1P42 A;  3T1H E;  1HK7 A;  1UDN A;  1E3H A;  4DR2 I;  4AID A;  3GME A;  4YY3 I;  4JYA E;  1YH8 A;  3K17 A;  2IES A;  4DR4 I;  1OJ4 A;  2WP8 B;  4DPX A;  4DR7 E;  3PYF A;  2BR2 A;  2UUC I;  4DUZ I;  4DUY I;  3K1J A;  4LFB E;  4JI7 E;  1NHJ A;  4X66 I;  3PS1 A;  1Z0E A;  1N0V C;  2JEB B;  2R42 A;  5K36 A;  1K47 A;  4LF9 I;  2UXC I;  1Z0V A;  4JI8 E;  2WNR A;  2PO2 A;  2Z5E A;  3HUL A;  2PNZ B;  3L7Z A;  3GLL A;  4B3T I;  1HR0 I;  3PYD A;  4GKJ E;  4URL A;  3Q6N A;  1ZM2 A;  4DV0 E;  4DV1 I;  1R6M A;  2AE8 A;  1FNM A;  1HNW I;  2X36 A;  5LMN I;  2CG9 A;  4OO1 A;  4JI3 E;  4KQV A;  1XNR E;  4NXM E;  1B63 A;  4DV7 E;  1YHC A;  2UU9 E;  1S16 A;  4B3R I;  3CWV A;  4LFA E;  2WP8 A;  4BA2 A;  4MQY A;  1Z5B A;  2BA0 D;  1I94 E;  4N3O A;  4LF7 E;  4X62 E;  1J5E E;  4LF6 I;  1HNX E;  3P3C A;  4AIM A;  3Q1Q A;  4YHH E;  1Z59 A;  1USU A;  2JE6 A;  1MG7 A;  5IWA I;  5JEA F;  3GCM A;  3PYG A;  4DXL A;  3H1C A;  3LTO A;  4EMD A;  3L7Z B;  1Z0T A;  1FJG I;  3T1H I;  3PYE A;  4FW7 A;  1FWK A;  3CDJ A;  5IT9 C;  5A2Q Q;  2VES A;  4FW5 A;  4DV5 I;  4HAC A;  1PIE A;  5JEA B;  2VQE E;  4K0K E;  1NZ0 A;  4DR6 E;  2X7I A;  4JI6 E;  4OO1 F;  2NPF A;  4BA2 B;  4USM A;  4WUD A;  5JEA D;  4LF5 I;  1OYP A;  2NN6 C;  3OTO E;  3M7N G;  1UEK A;  4X66 E;  4JV5 I;  2V2Z A;  4IZK A;  2JEB A;  4QNK A;  4JI1 I;  5K36 C;  1FKA E;  4DV6 E;  3M85 G;  4JI8 I;  2F1D A;  4FN5 A;  3QT6 A;  3B4T A;  4XTJ A;  2CZ9 A;  3H4L A;  4NXN I;  4WUC A;  3JAM Q;  4HAC B;  4GKK E;  5K36 F;  1ELO A;  4USK A;  4DR3 I;  2E1R A;  3P06 A;  2BM1 A;  4B3M E;  1H73 A;  1NHH A;  2O3Z A;  3JAM C;  4MU1 A;  3QT8 A;  4FWD A;  4IZJ B;  1U2R A;  2UUA E;  2O1W A;  4OO1 C;  5GME A;  1ZXN A;  5K36 D;  3CDI A;  2J65 A;  2GQ0 A;  1EI1 A;  4KHP E;  3PS2 A;  2PNZ A;  4DR2 E;  4LCG A;  2HFU A;  1PKP A;  2LJP A;  4B3R E;  4DR4 E;  1Z5A A;  3UHM A;  4LFA I;  5JEA C;  4DR7 I;  2CVE A;  3P3E A;  1I94 I;  2UUC E;  4DUZ E;  4LF7 I;  1XMQ E;  4ED4 A;  4DUY E;  3ZZU A;  4UT4 A;  1RR9 A;  2Z5C B;  4LF6 E;  2ZIT A;  4BA1 B;  4IZK B;  2AJ4 A;  5DRO A;  1N33 I;  4PU9 A;  4LF8 I;  4OO1 D;  2HHH I;  4AM3 A;  2HKJ A;  3T1Y I;  2E5L I;  4JI0 I;  2GO4 A;  4DV3 I;  3M85 D;  3M6A A;  5DRP A;  2UUB I;  4JI2 E;  4HY1 A;  3K85 A;  1ZM4 A;  4B3T E;  4DR6 I;  4JI6 I;  4X64 E;  4U3B A;  5BR8 E;  4NBQ A;  2NN6 D;  5GMD A;  1IBL E;  2BA0 G;  4Z7Y A;  4JG4 A;  4P7A A;  4IFD A;  4AQY I;  1VI7 A;  1MU5 A;  3ZKB A;  2PO0 A;  1IBM E;  4PRV A;  4DV4 I;  3B78 A;  1IBK E;  4DPU A;  4IS9 A;  3LPS A;  5LMU I;  5DRQ A;  2CGE A;  5LMN E;  4JI1 E;  4FW9 A;  1XMO I;  1UDO A;  5A2Q C;  3B82 A;  1S4E A;  4DV6 I;  1HNZ E;  2C37 B;  2BA1 D;  4LF4 I;  1Y4S A;  3ZM7 A;  2NN6 F;  1Z5C A;  1ZXM A;  1OYR A;  2VQF I;  2HK3 A;  1USV A;  1XXE A;  4JI5 E;  4GKK I;  4J3D A;  2ZBK B;  4MU4 A;  5C0X B;  4B3S I;  2BV3 A;  4DR5 E;  2OI2 A;  4GQU A;  2ZM6 I;  2Z5C A;  3J81 Q;  1HNX I;  5K36 E;  4YHH I;  2EFG A;  1NHI A;  4R1F A;  1N32 I;  3M7N D;  3HKM A;  3J80 C;  3P3G A;  2UUA I;  4UTG A;  3WU3 A;  2C39 B;  3Q6M A;  5DNL A;  4X65 I;  1Z0G A;  2VF3 A;  1N34 E;  4LPF A;  4LFC I;  4KHP I;  3J7A G;  1E3P A;  1FJG E;  4LCH A;  4MDT A;  2PO1 B;  4OX9 E;  4DV5 E;  1DAR A;  3ZKD A;  3HJC A;  2IOP A;  1KIJ A;  1EA6 A;  4PRX A;  2IER A;  4JI4 I;  5ELW A;  4DPW A;  4IFD F;  1XMQ I;  1Z0B A;  3J80 Q;  4FWH A;  3DD6 A;  4WUB A;  1XNQ E;  1N36 E;  5EL9 A;  3WU4 A;  4OO1 E;  4HXZ A;  2PNM A;  2V34 A;  2WW4 A;  4JI7 I;  1FI4 A;  5C0X F;  4IZJ D;  2A2D A;  4IZJ A;  1PVG A;  1H74 A;  2GO3 A;  1R6L A;  3T1Y E;  2E5L E;  4LF9 E;  4U3D A;  4LCF A;  2UXC E;  3F0N A;  5FLX Q;  2F4V E;  2BA1 G;  1RHY A;  2UUB E;  4DPY A;  4IFD D;  1H72 C;  4LOM A;  3ZZT A;  4NXN E;  4FW3 A;  5IT9 Q;  3J7A M;  1HR0 E;  1ZM3 A;  4DV2 E;  3WU5 A;  2DEI A;  2JT2 A;  4X64 I;  2V8P A;  4OKG A;  5C0X A;  1Y6Z A;  5C0X D;  3U1Y A;  4B3M I;  2PNL A;  5BR8 I;  2BR2 B;  1UDQ A;  4BA1 A;  2UXD I;  2JEA A;  4FW6 A;  4AQY E;  3J81 C;  2GS8 A;  2IOQ A;  1H7S A;  2PO0 B;  2JE6 B;  4DR1 E;  2R3V A;  4DV4 E;  1IBK I;  1KTV A;  2DEJ A;  5LMU E;  4FW4 A;  3WU6 A;  2C38 A;  5DRR A;  2UXB E;  1XMO E;  4DU7 A;  4JI3 I;  1XNR I;  2Z5B B;  2NN6 B;  3P76 A;  4NXM I;  2A2C A;  4IFD C;  1Y4U A;  2BM0 A;  2O1V A; 
#chains in the Genus database with same CATH homology
 5DRP A;  2JT2 A;  3UHM A;  4OKG A;  3P3G A;  3U1Y A;  1YHC A;  3P3E A;  3NZK A;  4ISA A;  2O3Z A;  4FW6 A;  4U3B A;  4FW7 A;  3PS1 A;  4LCH A;  1XXE A;  2GO3 A;  2VES A;  4FW5 A;  4MQY A;  4MDT A;  4J3D A;  5DRO A;  1P42 A;  4U3D A;  4LCF A;  4FW4 A;  2J65 A;  5DRR A;  3P3C A;  2IER A;  3PS2 A;  4OZE A;  4FW3 A;  4IS9 A;  1YH8 A;  3P76 A;  2IES A;  4LCG A;  5DRQ A;  2GO4 A;  3PS3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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