5DRRA

Crystal structure of the pseudomonas aeruginosa lpxc/lpc-058 complex
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
296
structure length
296
Chain Sequence
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Drug design from the cryptic inhibitor envelope.
pubmed doi rcsb
source organism Pseudomonas aeruginosa (strain atcc 15692 / pao1 / 1c / prs 101 / lmg 12228)
molecule tags Hydrolase/hydrolase inhibitor
total genus 96
structure length 296
sequence length 296
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2015-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 5drrA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 5drrA02
4FW4A 4LCGA 3P3GA 4LCHA 4MDTA 1XXEA 5DRPA 4FW6A 2GO3A 4U3DA 5DRQA 4FW3A 3PS3A 4J3DA 3P3CA 2VESA 2O3ZA 3P76A 3U1YA 4U3BA 3PS2A 4OZEA 3UHMA 2IERA 4MQYA 4FW7A 2IESA 4LCFA 4IS9A 2GO4A 3NZKA 5DRRA 5DROA 4OKGA 4FW5A 2JT2A 1P42A 3PS1A 1YHCA 2J65A 3P3EA 1YH8A 4ISAA
chains in the Genus database with same CATH superfamily
2CG9A 2BR2A 4UT4A 4DV7I 4JI1E 3P3GA 4QNJA 1NHIA 1PKPA 1ZM2A 2Z5BA 4OO1F 2GO3A 4JYAE 4N3OA 4YY3I 4DR5I 3H4LA 4X64I 3GCMA 3QT5A 4LF8I 2AE8A 3WU5A 4HACA 1Z0CA 5EL9A 4MQYA 4FN5A 3T1HE 4HYMA 2CGEA 2C39A 4DV2E 1KKHA 3GLLA 3PRYA 5JEAC 2GQ0A 2HK3A 5ELWA 4DPWA 2NN6B 4B3TE 1Y4UA 1FNMA 1VISA 2OI2A 5DRPA 1H74A 3L7ZB 1S4EA 2ZM6I 4JI4I 2JEAA 1UEKA 3U1YA 4U3BA 1UDQA 2HFUA 5GMDA 1Z0VA 3QT6A 5FWKA 4LF9E 5A2QC 4AIDA 3B78A 5LMNI 3H1CA 3J81C 2Z5EA 2UUBI 3T1YE 4LF6E 4B3SE 1Y5YA 2JEBA 4JI5I 1USVA 4DV1I 4JI1I 1OYSA 3HULA 4IZKA 4J3DA 4JI7E 1H7UA 4QNKA 1N34E 2A2DA 1HR0E 2PO1A 3M85G 2X7IA 3T1HI 1WUUA 3B4TA 1H73A 4IFDA 3P3EA 4JV5E 2PO2A 1MU5A 2BV3A 2V2ZA 2BR2B 3V2UC 3ZKBA 1BKNA 3B82A 4LCGA 4MDTA 4DUYI 2HHHE 4IZJB 4DR5E 2CZ9A 1EI1A 3M6AA 4X64E 4BA1B 4IFDE 4HACB 4MU1A 1USUA 3JAMC 4FW7A 4X62I 4LFAE 2E5LE 2IESA 4LF9I 2C39B 2PNZB 4OX9I 4FW5A 5C0XB 4DV6E 4DPUA 4DR4E 2ZITA 5IT9C 1S16A 3T1YI 4WUDA 4LF6I 4B3SI 2Q2EB 1XMOE 1Z5CA 4OO1A 4JI0I 4X66I 2JEAB 5DRQA 3P3CA 4B3RE 5IWAE 4KQVA 1RHYA 4AIMA 1FI4A 1UDNA 2BA1D 1N34I 2BA0D 1HR0I 3J7AG 3WU3A 2EFGA 4DV3E 5DRRA 1KTVA 1FKAE 4OO1D 4XTJA 2UUBE 1UDSA 2JT2A 3PYFA 4GQUA 4OO1E 4LFBE 1IBLE 3JAMQ 5K36D 1N32E 5BR8E 1ZM3A 2JEBB 4B3ME 4JI5E 4DV1E 5C0XC 4NBQA 1B63A 1EA6A 3J80Q 2V8PA 2VQFE 4FWGA 2HHHI 3K1JA 2UUAE 1PVGA 1KVKA 2O1WA 3UHMA 5K36F 4WUBA 4MYUA 4FW9A 4LFCE 4LFAI 2E5LI 3M7NG 2Z5CA 3Q1QA 4IFDB 2AJ4A 3P06A 2J65A 4DV6I 1QZRA 1XHKA 1DARA 3CWVA 3F0NA 4DR4I 2BA1G 2E1RA 4BA2A 1H7SA 2BA0G 4FWHA 4DUYE 2VF3A 1XMOI 5FLXQ 2C38A 4DV0I 2BM1A 1MG7A 4EMDA 4B3RI 5L3JA 1R6LA 5IWAI 4X62E 1IBME 1VI7A 4ED4A 4OX9E 1Y4SA 1Z0TA 4WUCA 4DV3I 3HJCA 4OKGA 1HNZE 2PNLA 1XNQE 4DV5E 4RPFA 4KHPE 1YH8A 4LFBI 3Q6MA 2X36A 1IBLI 1N32I 5BR8I 1MX0A 2WNRA 4B3MI 4IFDC 4OO1B 3CDJA 4JI0E 4X66E 2NN6C 4Z7YA 2VQFI 2O3ZA 3PS2A 2CVEA 2PO0B 1Z5BA 2HK2A 2UUAI 2WP8A 2LJPA 3PYEA 2BM0A 4HXZA 1FWLA 4LFCI 3DD6A 2UUCE 2O1UA 5JEAD 4MU0A 3WU6A 5A2QQ 2V2VA 5DNXA 1N33E 4GKKE 4FW6A 3GMEA 3J81Q 2Z5BB 2J7KA 2XEXA 5LMUE 4JI2I 1A6FA 4DPYA 5JEAF 4DR2E 1IBMI 4DU7A 3ZZTA 1J5EE 1HNZI 1XNQI 1D6TA 3ZKDA 4DV5I 4X65E 1HK7A 4ISAA 4KHPI 1RREA 1ZM4A 4GKJE 1E3PA 1RR9A 4LPFA 2UXDE 3L7ZA 2C38B 4DV0E 4NXNE 2HKJA 4MYTA 4DR3E 3V5RA 5K36A 2IOPA 1HNXE 4M1KA 3ZZ0A 2F4VE 1Z0BA 1Z59A 4PRVA 1ELOA 1B62A 2UU9E 2UUCI 3PYGA 3QT7A 2R3VA 1ZXMA 2NN6F 5K36E 2WW4A 2WNRB 1R6MA 4JI3E 1N33I 2DEIA 4IZKB 4GKKI 4U3DA 4PU9A 4HY1A 5LMUI 5IT9Q 3LTOA 2JE6A 1Z0GA 4USMA 3KRNA 2PO1B 1IBKE 4DR2I 4DUZE 2F1DA 2O1TA 4DR7I 4JI6I 2PO2B 2ZBKB 3K17A 1J5EI 5EKWA 1HNWI 4X65I 4GKJI 2C37A 1K47A 3OTOE 4DR1E 4AQYE 1NZ0A 4IZJA 2UXDI 3CDIA 4JI2E 4NXNI 4BA1A 4DR3I 2HFSA 5GMEA 3K85A 1HNXI 4DR6I 1NHJA 2F4VI 2PNZA 2DEJA 4IS9A 1E3HA 2R42A 1KIJA 5DROA 4Z7CA 3HKMA 5C0XA 4IZJD 5DNLA 1FWKA 3U1KA 4AM3A 5LL6R 3J7AM 2UU9I 1U2RA 1FJGE 4LF5E 1ZM9A 4MU3A 3M85D 1XXEA 1OYRA 4NXME 4JI3I 4YHHE 4FW3A 5C0XD 2V2QA 3D4JA 1Y6ZA 5C0XE 5K36B 1NHHA 1N0VC 4JI8E 1XMQE 1XNRE 2GS8A 4LOMA 4PRXA 5JEAA 1I94E 4URLA 4LF7I 1ZXNA 2GO4A 4LF4E 2V34A 4R1FA 1IBKI 4DUZI 1N0UA 4DPXA 2UXBE 2UXCE 5C0XF 3LPSA 3ZZUA 1H72C 1Z0WA 1N36E 5JEAE 2VQEE 4DV4E 2IOQA 3PYDA 3OTOI 4DR1I 4AQYI 4JYAI 2VESA 2JE6B 4MU4A 2O1VA 4ZVIA 4OO1C 4K0KE 1OJ4A 4FWDA 4USKA 3QT8A 4P52A 4DV2I 5K36C 2NPFA 2Z5CB 4DR7E 1P42A 3Q6NA 4JI6E 4UTGA 4P7AA 1HNWE 2NN6A 1Z0EA 4DV7E 4B3TI 4BA2B 1FJGI 2C37B 2A2CA 4LF5I 4YY3E 3GONA 4NXMI 2PNMA 4IFDD 4YHHI 4LF8E 4I3HA 3B8HA 4JI8I 2IERA 1XMQI 2NN6D 1XNRI 4DR6E 2NN6E 1OYPA 1I94I 4LCFA 3ZM7A 3NZKA 3J80C 4LF4I 1YHCA 4IFDF 2UXBI 2UXCI 1UDOA 4FW4A 3LNUA 4LCHA 1N36I 3M7ND 4DPTA 2ZM6E 4JI4E 2VQEI 4DV4I 3PS3A 3P76A 2PO0A 4JI7I 2HKEA 4OZEA 3WU4A 1Z5AA 2WP8B 5JEAB 4LF7E 4DXLA 5LMNE 4K0KI 4JG4A 5FLXC 1Y60A 3PS1A 1PIEA 4JV5I 4DU8A
chains in the Genus database with same CATH topology
4FW4A 4LCGA 3P3GA 4LCHA 4MDTA 1XXEA 5DRPA 4FW6A 2GO3A 4U3DA 5DRQA 4FW3A 3PS3A 4J3DA 3P3CA 2VESA 2O3ZA 3P76A 3U1YA 4U3BA 3PS2A 4OZEA 3UHMA 2IERA 4MQYA 4FW7A 2IESA 4LCFA 4IS9A 2GO4A 3NZKA 5DRRA 5DROA 4OKGA 4FW5A 2JT2A 1P42A 3PS1A 1YHCA 2J65A 3P3EA 1YH8A 4ISAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FW4 A;  4LCG A;  3P3G A;  4LCH A;  4MDT A;  1XXE A;  5DRP A;  4FW6 A;  2GO3 A;  4U3D A;  5DRQ A;  4FW3 A;  3PS3 A;  4J3D A;  3P3C A;  2VES A;  2O3Z A;  3P76 A;  3U1Y A;  4U3B A;  3PS2 A;  4OZE A;  3UHM A;  2IER A;  4MQY A;  4FW7 A;  2IES A;  4LCF A;  4IS9 A;  2GO4 A;  3NZK A;  5DRR A;  5DRO A;  4OKG A;  4FW5 A;  2JT2 A;  1P42 A;  3PS1 A;  1YHC A;  2J65 A;  3P3E A;  1YH8 A;  4ISA A; 
#chains in the Genus database with same CATH topology
 2CG9 A;  2BR2 A;  4UT4 A;  4DV7 I;  4JI1 E;  3P3G A;  4QNJ A;  1NHI A;  1PKP A;  1ZM2 A;  2Z5B A;  4OO1 F;  2GO3 A;  4JYA E;  4N3O A;  4YY3 I;  4DR5 I;  3H4L A;  4X64 I;  3GCM A;  3QT5 A;  4LF8 I;  2AE8 A;  3WU5 A;  4HAC A;  1Z0C A;  5EL9 A;  4MQY A;  4FN5 A;  3T1H E;  4HYM A;  2CGE A;  2C39 A;  4DV2 E;  1KKH A;  3GLL A;  3PRY A;  5JEA C;  2GQ0 A;  2HK3 A;  5ELW A;  4DPW A;  2NN6 B;  4B3T E;  1Y4U A;  1FNM A;  1VIS A;  2OI2 A;  5DRP A;  1H74 A;  3L7Z B;  1S4E A;  2ZM6 I;  4JI4 I;  2JEA A;  1UEK A;  3U1Y A;  4U3B A;  1UDQ A;  2HFU A;  5GMD A;  1Z0V A;  3QT6 A;  5FWK A;  4LF9 E;  5A2Q C;  4AID A;  3B78 A;  5LMN I;  3H1C A;  3J81 C;  2Z5E A;  2UUB I;  3T1Y E;  4LF6 E;  4B3S E;  1Y5Y A;  2JEB A;  4JI5 I;  1USV A;  4DV1 I;  4JI1 I;  1OYS A;  3HUL A;  4IZK A;  4J3D A;  4JI7 E;  1H7U A;  4QNK A;  1N34 E;  2A2D A;  1HR0 E;  2PO1 A;  3M85 G;  2X7I A;  3T1H I;  1WUU A;  3B4T A;  1H73 A;  4IFD A;  3P3E A;  4JV5 E;  2PO2 A;  1MU5 A;  2BV3 A;  2V2Z A;  2BR2 B;  3V2U C;  3ZKB A;  1BKN A;  3B82 A;  4LCG A;  4MDT A;  4DUY I;  2HHH E;  4IZJ B;  4DR5 E;  2CZ9 A;  1EI1 A;  3M6A A;  4X64 E;  4BA1 B;  4IFD E;  4HAC B;  4MU1 A;  1USU A;  3JAM C;  4FW7 A;  4X62 I;  4LFA E;  2E5L E;  2IES A;  4LF9 I;  2C39 B;  2PNZ B;  4OX9 I;  4FW5 A;  5C0X B;  4DV6 E;  4DPU A;  4DR4 E;  2ZIT A;  5IT9 C;  1S16 A;  3T1Y I;  4WUD A;  4LF6 I;  4B3S I;  2Q2E B;  1XMO E;  1Z5C A;  4OO1 A;  4JI0 I;  4X66 I;  2JEA B;  5DRQ A;  3P3C A;  4B3R E;  5IWA E;  4KQV A;  1RHY A;  4AIM A;  1FI4 A;  1UDN A;  2BA1 D;  1N34 I;  2BA0 D;  1HR0 I;  3J7A G;  3WU3 A;  2EFG A;  4DV3 E;  5DRR A;  1KTV A;  1FKA E;  4OO1 D;  4XTJ A;  2UUB E;  1UDS A;  2JT2 A;  3PYF A;  4GQU A;  4OO1 E;  4LFB E;  1IBL E;  3JAM Q;  5K36 D;  1N32 E;  5BR8 E;  1ZM3 A;  2JEB B;  4B3M E;  4JI5 E;  4DV1 E;  5C0X C;  4NBQ A;  1B63 A;  1EA6 A;  3J80 Q;  2V8P A;  2VQF E;  4FWG A;  2HHH I;  3K1J A;  2UUA E;  1PVG A;  1KVK A;  2O1W A;  3UHM A;  5K36 F;  4WUB A;  4MYU A;  4FW9 A;  4LFC E;  4LFA I;  2E5L I;  3M7N G;  2Z5C A;  3Q1Q A;  4IFD B;  2AJ4 A;  3P06 A;  2J65 A;  4DV6 I;  1QZR A;  1XHK A;  1DAR A;  3CWV A;  3F0N A;  4DR4 I;  2BA1 G;  2E1R A;  4BA2 A;  1H7S A;  2BA0 G;  4FWH A;  4DUY E;  2VF3 A;  1XMO I;  5FLX Q;  2C38 A;  4DV0 I;  2BM1 A;  1MG7 A;  4EMD A;  4B3R I;  5L3J A;  1R6L A;  5IWA I;  4X62 E;  1IBM E;  1VI7 A;  4ED4 A;  4OX9 E;  1Y4S A;  1Z0T A;  4WUC A;  4DV3 I;  3HJC A;  4OKG A;  1HNZ E;  2PNL A;  1XNQ E;  4DV5 E;  4RPF A;  4KHP E;  1YH8 A;  4LFB I;  3Q6M A;  2X36 A;  1IBL I;  1N32 I;  5BR8 I;  1MX0 A;  2WNR A;  4B3M I;  4IFD C;  4OO1 B;  3CDJ A;  4JI0 E;  4X66 E;  2NN6 C;  4Z7Y A;  2VQF I;  2O3Z A;  3PS2 A;  2CVE A;  2PO0 B;  1Z5B A;  2HK2 A;  2UUA I;  2WP8 A;  2LJP A;  3PYE A;  2BM0 A;  4HXZ A;  1FWL A;  4LFC I;  3DD6 A;  2UUC E;  2O1U A;  5JEA D;  4MU0 A;  3WU6 A;  5A2Q Q;  2V2V A;  5DNX A;  1N33 E;  4GKK E;  4FW6 A;  3GME A;  3J81 Q;  2Z5B B;  2J7K A;  2XEX A;  5LMU E;  4JI2 I;  1A6F A;  4DPY A;  5JEA F;  4DR2 E;  1IBM I;  4DU7 A;  3ZZT A;  1J5E E;  1HNZ I;  1XNQ I;  1D6T A;  3ZKD A;  4DV5 I;  4X65 E;  1HK7 A;  4ISA A;  4KHP I;  1RRE A;  1ZM4 A;  4GKJ E;  1E3P A;  1RR9 A;  4LPF A;  2UXD E;  3L7Z A;  2C38 B;  4DV0 E;  4NXN E;  2HKJ A;  4MYT A;  4DR3 E;  3V5R A;  5K36 A;  2IOP A;  1HNX E;  4M1K A;  3ZZ0 A;  2F4V E;  1Z0B A;  1Z59 A;  4PRV A;  1ELO A;  1B62 A;  2UU9 E;  2UUC I;  3PYG A;  3QT7 A;  2R3V A;  1ZXM A;  2NN6 F;  5K36 E;  2WW4 A;  2WNR B;  1R6M A;  4JI3 E;  1N33 I;  2DEI A;  4IZK B;  4GKK I;  4U3D A;  4PU9 A;  4HY1 A;  5LMU I;  5IT9 Q;  3LTO A;  2JE6 A;  1Z0G A;  4USM A;  3KRN A;  2PO1 B;  1IBK E;  4DR2 I;  4DUZ E;  2F1D A;  2O1T A;  4DR7 I;  4JI6 I;  2PO2 B;  2ZBK B;  3K17 A;  1J5E I;  5EKW A;  1HNW I;  4X65 I;  4GKJ I;  2C37 A;  1K47 A;  3OTO E;  4DR1 E;  4AQY E;  1NZ0 A;  4IZJ A;  2UXD I;  3CDI A;  4JI2 E;  4NXN I;  4BA1 A;  4DR3 I;  2HFS A;  5GME A;  3K85 A;  1HNX I;  4DR6 I;  1NHJ A;  2F4V I;  2PNZ A;  2DEJ A;  4IS9 A;  1E3H A;  2R42 A;  1KIJ A;  5DRO A;  4Z7C A;  3HKM A;  5C0X A;  4IZJ D;  5DNL A;  1FWK A;  3U1K A;  4AM3 A;  5LL6 R;  3J7A M;  2UU9 I;  1U2R A;  1FJG E;  4LF5 E;  1ZM9 A;  4MU3 A;  3M85 D;  1XXE A;  1OYR A;  4NXM E;  4JI3 I;  4YHH E;  4FW3 A;  5C0X D;  2V2Q A;  3D4J A;  1Y6Z A;  5C0X E;  5K36 B;  1NHH A;  1N0V C;  4JI8 E;  1XMQ E;  1XNR E;  2GS8 A;  4LOM A;  4PRX A;  5JEA A;  1I94 E;  4URL A;  4LF7 I;  1ZXN A;  2GO4 A;  4LF4 E;  2V34 A;  4R1F A;  1IBK I;  4DUZ I;  1N0U A;  4DPX A;  2UXB E;  2UXC E;  5C0X F;  3LPS A;  3ZZU A;  1H72 C;  1Z0W A;  1N36 E;  5JEA E;  2VQE E;  4DV4 E;  2IOQ A;  3PYD A;  3OTO I;  4DR1 I;  4AQY I;  4JYA I;  2VES A;  2JE6 B;  4MU4 A;  2O1V A;  4ZVI A;  4OO1 C;  4K0K E;  1OJ4 A;  4FWD A;  4USK A;  3QT8 A;  4P52 A;  4DV2 I;  5K36 C;  2NPF A;  2Z5C B;  4DR7 E;  1P42 A;  3Q6N A;  4JI6 E;  4UTG A;  4P7A A;  1HNW E;  2NN6 A;  1Z0E A;  4DV7 E;  4B3T I;  4BA2 B;  1FJG I;  2C37 B;  2A2C A;  4LF5 I;  4YY3 E;  3GON A;  4NXM I;  2PNM A;  4IFD D;  4YHH I;  4LF8 E;  4I3H A;  3B8H A;  4JI8 I;  2IER A;  1XMQ I;  2NN6 D;  1XNR I;  4DR6 E;  2NN6 E;  1OYP A;  1I94 I;  4LCF A;  3ZM7 A;  3NZK A;  3J80 C;  4LF4 I;  1YHC A;  4IFD F;  2UXB I;  2UXC I;  1UDO A;  4FW4 A;  3LNU A;  4LCH A;  1N36 I;  3M7N D;  4DPT A;  2ZM6 E;  4JI4 E;  2VQE I;  4DV4 I;  3PS3 A;  3P76 A;  2PO0 A;  4JI7 I;  2HKE A;  4OZE A;  3WU4 A;  1Z5A A;  2WP8 B;  5JEA B;  4LF7 E;  4DXL A;  5LMN E;  4K0K I;  4JG4 A;  5FLX C;  1Y60 A;  3PS1 A;  1PIE A;  4JV5 I;  4DU8 A; 
#chains in the Genus database with same CATH homology
 4FW4 A;  4LCG A;  3P3G A;  4LCH A;  4MDT A;  1XXE A;  5DRP A;  4FW6 A;  2GO3 A;  4U3D A;  5DRQ A;  4FW3 A;  3PS3 A;  4J3D A;  3P3C A;  2VES A;  2O3Z A;  3P76 A;  3U1Y A;  4U3B A;  3PS2 A;  4OZE A;  3UHM A;  2IER A;  4MQY A;  4FW7 A;  2IES A;  4LCF A;  4IS9 A;  2GO4 A;  3NZK A;  5DRR A;  5DRO A;  4OKG A;  4FW5 A;  2JT2 A;  1P42 A;  3PS1 A;  1YHC A;  2J65 A;  3P3E A;  1YH8 A;  4ISA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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