5DUAA

First condensation domain of the calcium-dependent antibiotic synthetase in complex with substrate analogue 3a
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
446
structure length
445
Chain Sequence
NSSVRHGLTSAQHCVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLTGGGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphopantetheine binding protein
molecule keywords CDA peptide synthetase I
publication title Chemical Probes Allow Structural Insight into the Condensation Reaction of Nonribosomal Peptide Synthetases.
pubmed doi rcsb
source organism Streptomyces coelicolor (strain atcc baa-471 / a3(2) / m145)
total genus 139
structure length 445
sequence length 446
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5duaA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 5duaA02
2II3A 4KECA 1PD5A 2E1UA 2E1VA 2RKTA 4JN3A 1L5AA 1EADA 2II4A 5FALA 5KJTA 3L60A 4N72A 1QCAA 3CLAA 4CLAA 2JGPA 1E2OA 2ZBAA 5T3EA 2E1TA 1NOCB 2VSQA 3FP0A 4JN5A 5KJVA 5FANA 3U9FA 5DU9A 3FOTA 4HVMA 2IHWA 2I9DA 5KJUA 1CLAA 4G22A 5DUAA 2BGHA 3B2SA 1EABA 1DPDA 1EAAA 1EACA 4G2MA 1Q9JA 1EAFA 5KJWA 3MAEA 4KE4A 1XMDA 2II5A 4G0BA 1XMCA 3U9BA 5KJSA 1Q23A 2XHGA 1DPBA 1XL7A 1C4TA 1CIAA 1XL8A 2RKVA 1DPCA 1SCZA 2CLAA 1EAEA 3B30A 2XR7A
chains in the Genus database with same CATH superfamily
2RKTA 5FALA 2JGPA 2ZBAA 5FANA 5DU9A 3FOTA 2BGHA 1DPDA 1T7QA 4G2MA 3MAEA 2FY2A 3U9BA 1XMCA 2DEBA 1XL7A 1C4TA 1SCZA 4N72A 3CLAA 2FW3A 2FY4A 5T3EA 2VSQA 1T7OA 5KJUA 1NM8A 1EACA 2H4TA 1Q9JA 5KJWA 4G0BA 1DPBA 1CIAA 1DPCA 1EAEA 2H3WA 4KECA 4EP9A 2E1UA 2E1VA 1L5AA 2II4A 1NDBA 5KJTA 3L60A 4EYWA 1QCAA 5KJVA 1NOCB 4JN5A 2IHWA 2FY3A 2I9DA 1CLAA 4G22A 5DUAA 2FY5A 4EPHA 1EAFA 2II5A 5KJSA 2H3PA 1XL8A 2RKVA 3B30A 2CLAA 3FP0A 1Q6XA 1NDFA 2II3A 1PD5A 1EADA 2H3UA 1T7NA 1T1UA 4CLAA 1E2OA 2E1TA 3U9FA 1NDIA 4HVMA 3B2SA 1EABA 1EAAA 1S5OA 4KE4A 1XMDA 2FYOA 1Q23A 2XHGA 2RCUA 4JN3A 2XR7A
chains in the Genus database with same CATH topology
2RKTA 5FALA 2JGPA 2ZBAA 5FANA 5DU9A 3FOTA 2BGHA 1DPDA 1T7QA 4G2MA 3MAEA 2FY2A 3U9BA 1XMCA 2DEBA 1XL7A 1C4TA 1SCZA 4N72A 3CLAA 5T3EA 2FW3A 2FY4A 2VSQA 1T7OA 5KJUA 1NM8A 1EACA 2H4TA 1Q9JA 5KJWA 4G0BA 1DPBA 1CIAA 1DPCA 1EAEA 4KECA 2H3WA 4EP9A 2E1UA 2E1VA 1L5AA 2II4A 1NDBA 5KJTA 3L60A 4EYWA 1QCAA 5KJVA 1NOCB 4JN5A 2IHWA 2FY3A 2I9DA 1CLAA 4G22A 5DUAA 2FY5A 4EPHA 1EAFA 2II5A 5KJSA 2H3PA 1XL8A 2RKVA 3B30A 2CLAA 3FP0A 1Q6XA 2II3A 1NDFA 1PD5A 1EADA 2H3UA 1T7NA 1T1UA 4CLAA 1E2OA 2E1TA 3U9FA 1NDIA 4HVMA 3B2SA 1EABA 1EAAA 1S5OA 4KE4A 1XMDA 2FYOA 1Q23A 2XHGA 2RCUA 4JN3A 2XR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2II3 A;  4KEC A;  1PD5 A;  2E1U A;  2E1V A;  2RKT A;  4JN3 A;  1L5A A;  1EAD A;  2II4 A;  5FAL A;  5KJT A;  3L60 A;  4N72 A;  1QCA A;  3CLA A;  4CLA A;  2JGP A;  1E2O A;  2ZBA A;  5T3E A;  2E1T A;  1NOC B;  2VSQ A;  3FP0 A;  4JN5 A;  5KJV A;  5FAN A;  3U9F A;  5DU9 A;  3FOT A;  4HVM A;  2IHW A;  2I9D A;  5KJU A;  1CLA A;  4G22 A;  5DUA A;  2BGH A;  3B2S A;  1EAB A;  1DPD A;  1EAA A;  1EAC A;  4G2M A;  1Q9J A;  1EAF A;  5KJW A;  3MAE A;  4KE4 A;  1XMD A;  2II5 A;  4G0B A;  1XMC A;  3U9B A;  5KJS A;  1Q23 A;  2XHG A;  1DPB A;  1XL7 A;  1C4T A;  1CIA A;  1XL8 A;  2RKV A;  1DPC A;  1SCZ A;  2CLA A;  1EAE A;  3B30 A;  2XR7 A; 
#chains in the Genus database with same CATH topology
 2RKT A;  5FAL A;  2JGP A;  2ZBA A;  5FAN A;  5DU9 A;  3FOT A;  2BGH A;  1DPD A;  1T7Q A;  4G2M A;  3MAE A;  2FY2 A;  3U9B A;  1XMC A;  2DEB A;  1XL7 A;  1C4T A;  1SCZ A;  4N72 A;  3CLA A;  2FW3 A;  2FY4 A;  5T3E A;  2VSQ A;  1T7O A;  5KJU A;  1NM8 A;  1EAC A;  2H4T A;  1Q9J A;  5KJW A;  4G0B A;  1DPB A;  1CIA A;  1DPC A;  1EAE A;  2H3W A;  4KEC A;  4EP9 A;  2E1U A;  2E1V A;  1L5A A;  2II4 A;  1NDB A;  5KJT A;  3L60 A;  4EYW A;  1QCA A;  5KJV A;  1NOC B;  4JN5 A;  2IHW A;  2FY3 A;  2I9D A;  1CLA A;  4G22 A;  5DUA A;  2FY5 A;  4EPH A;  1EAF A;  2II5 A;  5KJS A;  2H3P A;  1XL8 A;  2RKV A;  3B30 A;  2CLA A;  3FP0 A;  1Q6X A;  1NDF A;  2II3 A;  1PD5 A;  1EAD A;  2H3U A;  1T7N A;  1T1U A;  4CLA A;  1E2O A;  2E1T A;  3U9F A;  1NDI A;  4HVM A;  3B2S A;  1EAB A;  1EAA A;  1S5O A;  4KE4 A;  1XMD A;  2FYO A;  1Q23 A;  2XHG A;  2RCU A;  4JN3 A;  2XR7 A; 
#chains in the Genus database with same CATH homology
 2RKT A;  5FAL A;  2JGP A;  2ZBA A;  5FAN A;  5DU9 A;  3FOT A;  2BGH A;  1DPD A;  1T7Q A;  4G2M A;  3MAE A;  2FY2 A;  3U9B A;  1XMC A;  2DEB A;  1XL7 A;  1C4T A;  1SCZ A;  4N72 A;  3CLA A;  5T3E A;  2FW3 A;  2FY4 A;  2VSQ A;  1T7O A;  5KJU A;  1NM8 A;  1EAC A;  2H4T A;  1Q9J A;  5KJW A;  4G0B A;  1DPB A;  1CIA A;  1DPC A;  1EAE A;  4KEC A;  2H3W A;  4EP9 A;  2E1U A;  2E1V A;  1L5A A;  2II4 A;  1NDB A;  5KJT A;  3L60 A;  4EYW A;  1QCA A;  5KJV A;  1NOC B;  4JN5 A;  2IHW A;  2FY3 A;  2I9D A;  1CLA A;  4G22 A;  5DUA A;  2FY5 A;  4EPH A;  1EAF A;  2II5 A;  5KJS A;  2H3P A;  1XL8 A;  2RKV A;  3B30 A;  2CLA A;  3FP0 A;  1Q6X A;  2II3 A;  1NDF A;  1PD5 A;  1EAD A;  2H3U A;  1T7N A;  1T1U A;  4CLA A;  1E2O A;  2E1T A;  3U9F A;  1NDI A;  4HVM A;  3B2S A;  1EAB A;  1EAA A;  1S5O A;  4KE4 A;  1XMD A;  2FYO A;  1Q23 A;  2XHG A;  2RCU A;  4JN3 A;  2XR7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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