5DV4A

Crystal structure of human cnot6l in complex with neomycin
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
372
structure length
344
Chain Sequence
LPPRPWITLKERDQSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords CCR4-NOT transcription complex subunit 6-like
publication title Structural basis for inhibition of the deadenylase activity of human CNOT6L
pubmed doi rcsb
source organism Homo sapiens
total genus 119
structure length 344
sequence length 372
ec nomenclature ec 3.1.13.4: Poly(A)-specific ribonuclease.
pdb deposition date 2015-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 5dv4A00
5A7JA 5J42A 3NGOA 3CJCD 3NR8A 2F2FB 4B5IA 3I48A 4QH9A 5EWTA 5J3ZA 3L1WA 1SI6X 3NGNA 3G6SA 5INOA 3MTCA 4F1HA 2A41B 4AWNA 4B5JA 3I5VA 3G00A 4B5FA 4LNDA 4CMNA 3G2CA 5INQA 4F1HB 4B5GA 4GZ2A 3K55A 4GZ1A 2V0RA 3G2DA 3G0AA 2A3ZB 2IMQX 5INNA 2EI9A 1Y21A 2DNJA 1YJHA 2JC4A 4C1RA 2O3HA 4L1YA 3G38A 2DDTA 2D1KB 3NGQA 3MPRA 5DV4A 1I9YA 4RUWA 5A7IA 4GEWA 5DG0A 2A40B 5J3PA 3G91A 3G3CA 3G8VA 2JC5A 5INKA 5J3SA 3FZIA 4IEMA 5DFJA 3G1KA 4B5MA 4F1IA 1ZWXA 2F1NA 3DNIA 2ISIA 4FPVA 3W2YA 5INLA 3W3DB 1I9ZA 3GA6A 5CFEA 5J8NA 5INMA 2DDRA 1DNKA 1DE8A 1HD7A 4FVAA 5HT2A 1E9NA 1BIXA 3U8UA 3TEBA 3I41A 3G0RA 4B5HA 1NTFA 4L1ZA 1VYBA 4K6LF 4A9CA 5INPA 5DFIA 2V0SA 4CMLA 2O3CA 5DFFA 5CFGA 2J63A 4GZ0A 2XSWA 1SR4B 4L20A 1AKOA 2VOAA 1WDUA 4JG3A 5DFHA 4PUQA 1DEWA 2DDSA 3W2XA 3G3YA 5DV2A 1ATND 3WCXA 3G4TA 2A42B 4L21A 4QHEA 3N9VA 3I46A 2UYRX 4QHDA 4F1RA 1DE9A 4GYZA
chains in the Genus database with same CATH superfamily
5A7JA 5J42A 3NGOA 3CJCD 3NR8A 2F2FB 4B5IA 3I48A 4QH9A 5EWTA 5J3ZA 3L1WA 1SI6X 3NGNA 3G6SA 5INOA 3MTCA 4F1HA 2A41B 4AWNA 4B5JA 3I5VA 3G00A 4B5FA 4LNDA 4CMNA 3G2CA 5INQA 4F1HB 4B5GA 4GZ2A 3K55A 4GZ1A 2V0RA 3G2DA 3G0AA 2A3ZB 2IMQX 5INNA 2EI9A 1Y21A 2DNJA 1YJHA 2JC4A 4C1RA 2O3HA 4L1YA 3G38A 2DDTA 2D1KB 3NGQA 3MPRA 5DV4A 1I9YA 4RUWA 5A7IA 4GEWA 5DG0A 2A40B 5J3PA 3G91A 3G3CA 3G8VA 2JC5A 5INKA 5J3SA 3FZIA 4IEMA 5DFJA 3G1KA 4B5MA 4F1IA 1ZWXA 2F1NA 3DNIA 2ISIA 4FPVA 3W2YA 5INLA 3W3DB 1I9ZA 3GA6A 5CFEA 5J8NA 5INMA 2DDRA 1DNKA 1DE8A 1HD7A 4FVAA 5HT2A 1E9NA 1BIXA 3U8UA 3TEBA 3I41A 3G0RA 4B5HA 1NTFA 4L1ZA 1VYBA 4K6LF 4A9CA 5INPA 5DFIA 2V0SA 4CMLA 2O3CA 5DFFA 5CFGA 2J63A 4GZ0A 2XSWA 1SR4B 4L20A 1AKOA 2VOAA 1WDUA 4JG3A 5DFHA 4PUQA 1DEWA 2DDSA 3W2XA 3G3YA 5DV2A 1ATND 3WCXA 3G4TA 2A42B 4L21A 4QHEA 3N9VA 3I46A 2UYRX 4QHDA 4F1RA 1DE9A 4GYZA
chains in the Genus database with same CATH topology
5A7JA 5J42A 3NGOA 3CJCD 3NR8A 2F2FB 4B5IA 3I48A 4QH9A 5EWTA 5J3ZA 3L1WA 1SI6X 3NGNA 3G6SA 5INOA 3MTCA 4F1HA 2A41B 4AWNA 4B5JA 3I5VA 3G00A 4B5FA 4LNDA 4CMNA 3G2CA 5INQA 4F1HB 4B5GA 4GZ2A 3K55A 4GZ1A 2V0RA 3G2DA 3G0AA 2A3ZB 2IMQX 5INNA 2EI9A 1Y21A 2DNJA 1YJHA 2JC4A 4C1RA 2O3HA 4L1YA 3G38A 2DDTA 2D1KB 3NGQA 3MPRA 5DV4A 1I9YA 4RUWA 5A7IA 4GEWA 5DG0A 2A40B 5J3PA 3G91A 3G3CA 3G8VA 2JC5A 5INKA 5J3SA 3FZIA 4IEMA 5DFJA 3G1KA 4B5MA 4F1IA 1ZWXA 2F1NA 3DNIA 2ISIA 4FPVA 3W2YA 5INLA 3W3DB 1I9ZA 3GA6A 5CFEA 5J8NA 5INMA 2DDRA 1DNKA 1DE8A 1HD7A 4FVAA 5HT2A 1E9NA 1BIXA 3U8UA 3TEBA 3I41A 3G0RA 4B5HA 1NTFA 4L1ZA 1VYBA 4K6LF 4A9CA 5INPA 5DFIA 2V0SA 4CMLA 2O3CA 5DFFA 5CFGA 2J63A 4GZ0A 2XSWA 1SR4B 4L20A 1AKOA 2VOAA 1WDUA 4JG3A 5DFHA 4PUQA 1DEWA 2DDSA 3W2XA 3G3YA 5DV2A 1ATND 3WCXA 3G4TA 2A42B 4L21A 4QHEA 3N9VA 3I46A 2UYRX 4QHDA 4F1RA 1DE9A 4GYZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A7J A;  5J42 A;  3NGO A;  3CJC D;  3NR8 A;  2F2F B;  4B5I A;  3I48 A;  4QH9 A;  5EWT A;  5J3Z A;  3L1W A;  1SI6 X;  3NGN A;  3G6S A;  5INO A;  3MTC A;  4F1H A;  2A41 B;  4AWN A;  4B5J A;  3I5V A;  3G00 A;  4B5F A;  4LND A;  4CMN A;  3G2C A;  5INQ A;  4F1H B;  4B5G A;  4GZ2 A;  3K55 A;  4GZ1 A;  2V0R A;  3G2D A;  3G0A A;  2A3Z B;  2IMQ X;  5INN A;  2EI9 A;  1Y21 A;  2DNJ A;  1YJH A;  2JC4 A;  4C1R A;  2O3H A;  4L1Y A;  3G38 A;  2DDT A;  2D1K B;  3NGQ A;  3MPR A;  5DV4 A;  1I9Y A;  4RUW A;  5A7I A;  4GEW A;  5DG0 A;  2A40 B;  5J3P A;  3G91 A;  3G3C A;  3G8V A;  2JC5 A;  5INK A;  5J3S A;  3FZI A;  4IEM A;  5DFJ A;  3G1K A;  4B5M A;  4F1I A;  1ZWX A;  2F1N A;  3DNI A;  2ISI A;  4FPV A;  3W2Y A;  5INL A;  3W3D B;  1I9Z A;  3GA6 A;  5CFE A;  5J8N A;  5INM A;  2DDR A;  1DNK A;  1DE8 A;  1HD7 A;  4FVA A;  5HT2 A;  1E9N A;  1BIX A;  3U8U A;  3TEB A;  3I41 A;  3G0R A;  4B5H A;  1NTF A;  4L1Z A;  1VYB A;  4K6L F;  4A9C A;  5INP A;  5DFI A;  2V0S A;  4CML A;  2O3C A;  5DFF A;  5CFG A;  2J63 A;  4GZ0 A;  2XSW A;  1SR4 B;  4L20 A;  1AKO A;  2VOA A;  1WDU A;  4JG3 A;  5DFH A;  4PUQ A;  1DEW A;  2DDS A;  3W2X A;  3G3Y A;  5DV2 A;  1ATN D;  3WCX A;  3G4T A;  2A42 B;  4L21 A;  4QHE A;  3N9V A;  3I46 A;  2UYR X;  4QHD A;  4F1R A;  1DE9 A;  4GYZ A; 
#chains in the Genus database with same CATH topology
 5A7J A;  5J42 A;  3NGO A;  3CJC D;  3NR8 A;  2F2F B;  4B5I A;  3I48 A;  4QH9 A;  5EWT A;  5J3Z A;  3L1W A;  1SI6 X;  3NGN A;  3G6S A;  5INO A;  3MTC A;  4F1H A;  2A41 B;  4AWN A;  4B5J A;  3I5V A;  3G00 A;  4B5F A;  4LND A;  4CMN A;  3G2C A;  5INQ A;  4F1H B;  4B5G A;  4GZ2 A;  3K55 A;  4GZ1 A;  2V0R A;  3G2D A;  3G0A A;  2A3Z B;  2IMQ X;  5INN A;  2EI9 A;  1Y21 A;  2DNJ A;  1YJH A;  2JC4 A;  4C1R A;  2O3H A;  4L1Y A;  3G38 A;  2DDT A;  2D1K B;  3NGQ A;  3MPR A;  5DV4 A;  1I9Y A;  4RUW A;  5A7I A;  4GEW A;  5DG0 A;  2A40 B;  5J3P A;  3G91 A;  3G3C A;  3G8V A;  2JC5 A;  5INK A;  5J3S A;  3FZI A;  4IEM A;  5DFJ A;  3G1K A;  4B5M A;  4F1I A;  1ZWX A;  2F1N A;  3DNI A;  2ISI A;  4FPV A;  3W2Y A;  5INL A;  3W3D B;  1I9Z A;  3GA6 A;  5CFE A;  5J8N A;  5INM A;  2DDR A;  1DNK A;  1DE8 A;  1HD7 A;  4FVA A;  5HT2 A;  1E9N A;  1BIX A;  3U8U A;  3TEB A;  3I41 A;  3G0R A;  4B5H A;  1NTF A;  4L1Z A;  1VYB A;  4K6L F;  4A9C A;  5INP A;  5DFI A;  2V0S A;  4CML A;  2O3C A;  5DFF A;  5CFG A;  2J63 A;  4GZ0 A;  2XSW A;  1SR4 B;  4L20 A;  1AKO A;  2VOA A;  1WDU A;  4JG3 A;  5DFH A;  4PUQ A;  1DEW A;  2DDS A;  3W2X A;  3G3Y A;  5DV2 A;  1ATN D;  3WCX A;  3G4T A;  2A42 B;  4L21 A;  4QHE A;  3N9V A;  3I46 A;  2UYR X;  4QHD A;  4F1R A;  1DE9 A;  4GYZ A; 
#chains in the Genus database with same CATH homology
 5A7J A;  5J42 A;  3NGO A;  3CJC D;  3NR8 A;  2F2F B;  4B5I A;  3I48 A;  4QH9 A;  5EWT A;  5J3Z A;  3L1W A;  1SI6 X;  3NGN A;  3G6S A;  5INO A;  3MTC A;  4F1H A;  2A41 B;  4AWN A;  4B5J A;  3I5V A;  3G00 A;  4B5F A;  4LND A;  4CMN A;  3G2C A;  5INQ A;  4F1H B;  4B5G A;  4GZ2 A;  3K55 A;  4GZ1 A;  2V0R A;  3G2D A;  3G0A A;  2A3Z B;  2IMQ X;  5INN A;  2EI9 A;  1Y21 A;  2DNJ A;  1YJH A;  2JC4 A;  4C1R A;  2O3H A;  4L1Y A;  3G38 A;  2DDT A;  2D1K B;  3NGQ A;  3MPR A;  5DV4 A;  1I9Y A;  4RUW A;  5A7I A;  4GEW A;  5DG0 A;  2A40 B;  5J3P A;  3G91 A;  3G3C A;  3G8V A;  2JC5 A;  5INK A;  5J3S A;  3FZI A;  4IEM A;  5DFJ A;  3G1K A;  4B5M A;  4F1I A;  1ZWX A;  2F1N A;  3DNI A;  2ISI A;  4FPV A;  3W2Y A;  5INL A;  3W3D B;  1I9Z A;  3GA6 A;  5CFE A;  5J8N A;  5INM A;  2DDR A;  1DNK A;  1DE8 A;  1HD7 A;  4FVA A;  5HT2 A;  1E9N A;  1BIX A;  3U8U A;  3TEB A;  3I41 A;  3G0R A;  4B5H A;  1NTF A;  4L1Z A;  1VYB A;  4K6L F;  4A9C A;  5INP A;  5DFI A;  2V0S A;  4CML A;  2O3C A;  5DFF A;  5CFG A;  2J63 A;  4GZ0 A;  2XSW A;  1SR4 B;  4L20 A;  1AKO A;  2VOA A;  1WDU A;  4JG3 A;  5DFH A;  4PUQ A;  1DEW A;  2DDS A;  3W2X A;  3G3Y A;  5DV2 A;  1ATN D;  3WCX A;  3G4T A;  2A42 B;  4L21 A;  4QHE A;  3N9V A;  3I46 A;  2UYR X;  4QHD A;  4F1R A;  1DE9 A;  4GYZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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