5E01A

Crystal structure of hinmlr, a merr family regulator lacking the sensor domain, bound to palyndromic promoter dna
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
126
structure length
126
Chain Sequence
MTYTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSLKDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAKALGSVKAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis of thiol-based regulation of formaldehyde detoxification in H. influenzae by a MerR regulator with no sensor region.
pubmed doi rcsb
molecule tags Transcription
source organism Haemophilus influenzae (strain atcc 51907 / dsm 11121 / kw20 / rd)
molecule keywords Uncharacterized HTH-type transcriptional regulator HI_0186
total genus 47
structure length 126
sequence length 126
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00376 MerR MerR family regulatory protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 5e01A00
3D6YA 4WLSA 3D6ZA 3GPVA 4WLWA 4J2NA 3D71A 4R4EA 3GP4A 3IAOA 1Q07A 1JBGA 2ZHHA 4R22B 5I44A 3QAOA 3Q5RA 1R8EA 3Q3DA 2JMLA 1Q06A 1EXJA 2VZ4A 3Q5PA 3Q5SA 1R8DA 3Q2YA 4R24B 3D70A 3Q1MA 1Q08A 2DG6A 3UCSA 1EXIA 3HH0A 1Q0AA 5I41B 5D90A 1Q05A 2ZHGA 5D8CA 1Q09A 5E01A
chains in the Genus database with same CATH superfamily
3D6YA 2IEFA 4WLSA 3D6ZA 4LHFA 3GPVA 4WLWA 4J2NA 3D71A 4R4EA 2OG0A 3GP4A 3IAOA 3EZFA 4DCZA 1Q07A 1JBGA 2ZHHA 4R22B 5I44A 3QAOA 3Q5RA 1R8EA 3Q3DA 1PM6A 3EZ6A 2JMLA 1Q06A 1Y6UA 3EZ9A 2VZ4A 3Q5PA 3Q5SA 1EXJA 1R8DA 1RH6A 3Q2YA 3EZ7A 4R24B 3Q1MA 3D70A 1Q08A 2DG6A 3UCSA 1EXIA 3HH0A 1Q0AA 5I41B 5D90A 2KVVA 1Q05A 2ZHGA 3EZ2A 5D8CA 1Q09A 1LX8A 5E01A
chains in the Genus database with same CATH topology
3D6YA 2IEFA 4WLSA 3D6ZA 4LHFA 3GPVA 4WLWA 4J2NA 3D71A 4R4EA 2OG0A 3GP4A 3IAOA 3EZFA 4DCZA 1Q07A 1JBGA 2ZHHA 4R22B 5I44A 3QAOA 3Q5RA 1R8EA 3Q3DA 1PM6A 3EZ6A 2JMLA 1Q06A 1Y6UA 3EZ9A 2VZ4A 3Q5PA 3Q5SA 1EXJA 1R8DA 1RH6A 3Q2YA 3EZ7A 4R24B 3Q1MA 3D70A 1Q08A 2DG6A 3UCSA 1EXIA 3HH0A 1Q0AA 5I41B 5D90A 2KVVA 1Q05A 2ZHGA 3EZ2A 5D8CA 1Q09A 1LX8A 5E01A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D6Y A;  4WLS A;  3D6Z A;  3GPV A;  4WLW A;  4J2N A;  3D71 A;  4R4E A;  3GP4 A;  3IAO A;  1Q07 A;  1JBG A;  2ZHH A;  4R22 B;  5I44 A;  3QAO A;  3Q5R A;  1R8E A;  3Q3D A;  2JML A;  1Q06 A;  1EXJ A;  2VZ4 A;  3Q5P A;  3Q5S A;  1R8D A;  3Q2Y A;  4R24 B;  3D70 A;  3Q1M A;  1Q08 A;  2DG6 A;  3UCS A;  1EXI A;  3HH0 A;  1Q0A A;  5I41 B;  5D90 A;  1Q05 A;  2ZHG A;  5D8C A;  1Q09 A;  5E01 A; 
#chains in the Genus database with same CATH topology
 3D6Y A;  2IEF A;  4WLS A;  3D6Z A;  4LHF A;  3GPV A;  4WLW A;  4J2N A;  3D71 A;  4R4E A;  2OG0 A;  3GP4 A;  3IAO A;  3EZF A;  4DCZ A;  1Q07 A;  1JBG A;  2ZHH A;  4R22 B;  5I44 A;  3QAO A;  3Q5R A;  1R8E A;  3Q3D A;  1PM6 A;  3EZ6 A;  2JML A;  1Q06 A;  1Y6U A;  3EZ9 A;  2VZ4 A;  3Q5P A;  3Q5S A;  1EXJ A;  1R8D A;  1RH6 A;  3Q2Y A;  3EZ7 A;  4R24 B;  3Q1M A;  3D70 A;  1Q08 A;  2DG6 A;  3UCS A;  1EXI A;  3HH0 A;  1Q0A A;  5I41 B;  5D90 A;  2KVV A;  1Q05 A;  2ZHG A;  3EZ2 A;  5D8C A;  1Q09 A;  1LX8 A;  5E01 A; 
#chains in the Genus database with same CATH homology
 3D6Y A;  2IEF A;  4WLS A;  3D6Z A;  4LHF A;  3GPV A;  4WLW A;  4J2N A;  3D71 A;  4R4E A;  2OG0 A;  3GP4 A;  3IAO A;  3EZF A;  4DCZ A;  1Q07 A;  1JBG A;  2ZHH A;  4R22 B;  5I44 A;  3QAO A;  3Q5R A;  1R8E A;  3Q3D A;  1PM6 A;  3EZ6 A;  2JML A;  1Q06 A;  1Y6U A;  3EZ9 A;  2VZ4 A;  3Q5P A;  3Q5S A;  1EXJ A;  1R8D A;  1RH6 A;  3Q2Y A;  3EZ7 A;  4R24 B;  3Q1M A;  3D70 A;  1Q08 A;  2DG6 A;  3UCS A;  1EXI A;  3HH0 A;  1Q0A A;  5I41 B;  5D90 A;  2KVV A;  1Q05 A;  2ZHG A;  3EZ2 A;  5D8C A;  1Q09 A;  1LX8 A;  5E01 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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