5E0ZA

Crystal structure of pasta domains 3 and 4 of mycobacterium tuberculosis protein kinase b
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
136
structure length
136
Chain Sequence
GPATKDIPDVAGQTVDVAQKNLNVYGFTKFSQASVDSPRPAGEVTGTNPPAGTTVPVDSVIELQVSKGNQFVMPDLSGMFWVDAEPRLRALGWTGMLDKGADVDAGGSQHNRVVYQNPPAGTGVNRDGIITLRFGQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Serine/threonine-protein kinase PknB
publication title Structural and Genetic Analyses of the Mycobacterium tuberculosis Protein Kinase B Sensor Domain Identify a Potential Ligand-binding Site.
pubmed doi rcsb
source organism Mycobacterium tuberculosis (strain atcc 25618 / h37rv)
total genus 39
structure length 136
sequence length 136
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2015-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03793 PASTA PASTA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 5e0zA01
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 5e0zA02
2KUEA 2KUFA 3PY9A 2MGVA 5E10A 5E0ZA 2KUIA 3M9GA 5E0YA 3OUVA 2KUDA
chains in the Genus database with same CATH superfamily
1TMGI 1ACBI 2KUEA 1TO2I 1DWMA 1TM7I 5FFNI 4B2BB 3W0EA 1EGLA 5FBZB 2KUIA 1SIBI 1YPCI 1MITA 1TO1I 2SECI 3W0DA 3OUVA 1Y3FI 1YPAI 1Y3CI 2KUFA 1CSEI 1HYMA 1VBWA 1Y4AI 3RDZC 1SBNI 1TECI 1Y4DI 2CI2I 5E0ZA 4H4FB 1TM4I 1TM5I 4B1TB 2KUDA 1Y34I 2MGVA 3RDYA 1TM1I 5E10A 1Y1KI 1LW6I 3CI2A 3M9GA 1Y3BI 1Y33I 1COAI 1Y48I 1TINA 3PY9A 4B2AB 1CISA 1YPBI 1Y3DI 1MEEI 1TM3I 5E0YA 3TECI 4B2CB 2TECI 2SNII
chains in the Genus database with same CATH topology
2KUEA 2KUFA 3PY9A 2MGVA 5E10A 5E0ZA 2KUIA 3M9GA 5E0YA 3OUVA 2KUDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KUE A;  2KUF A;  3PY9 A;  2MGV A;  5E10 A;  5E0Z A;  2KUI A;  3M9G A;  5E0Y A;  3OUV A;  2KUD A; 
#chains in the Genus database with same CATH topology
 1TMG I;  1ACB I;  2KUE A;  1TO2 I;  1DWM A;  1TM7 I;  5FFN I;  4B2B B;  3W0E A;  1EGL A;  5FBZ B;  2KUI A;  1SIB I;  1YPC I;  1MIT A;  1TO1 I;  2SEC I;  3W0D A;  3OUV A;  1Y3F I;  1YPA I;  1Y3C I;  2KUF A;  1CSE I;  1HYM A;  1VBW A;  1Y4A I;  3RDZ C;  1SBN I;  1TEC I;  1Y4D I;  2CI2 I;  5E0Z A;  4H4F B;  1TM4 I;  1TM5 I;  4B1T B;  2KUD A;  1Y34 I;  2MGV A;  3RDY A;  1TM1 I;  5E10 A;  1Y1K I;  1LW6 I;  3CI2 A;  3M9G A;  1Y3B I;  1Y33 I;  1COA I;  1Y48 I;  1TIN A;  3PY9 A;  4B2A B;  1CIS A;  1YPB I;  1Y3D I;  1MEE I;  1TM3 I;  5E0Y A;  3TEC I;  4B2C B;  2TEC I;  2SNI I; 
#chains in the Genus database with same CATH homology
 2KUE A;  2KUF A;  3PY9 A;  2MGV A;  5E10 A;  5E0Z A;  2KUI A;  3M9G A;  5E0Y A;  3OUV A;  2KUD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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