5E1VA

Crystal structure of a monomeric dehydratase domain from a trans at polyketide synthase split module
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
273
structure length
273
Chain Sequence
VKKITKQLTLSLKNPFIYHHVVYGQNVLPGLAYIDIIYQIFREHGFSCSELQLRNLSIYQPLTAEQDAVIVLNIQCAEKKEGQWQITAKGIEKRDGKEASEEKLYMKADMHADSPAIFEETLDLSQIKASAQNVVQLDDVYEQCRRQELVHSEYMKAKGCIYEEEDGVLLELSLGSEAMLHAEGFMFHPTLIDGSGVGANHLLTSLLKGEQRLYLPLFYESFSASALLQTDCMTRIKRSSVRREKELIYVTLEFFNASGEKVAELKNFTSKLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Polyketide synthase PksL
publication title Crystal structure of a monomeric dehydratase domain from a trans AT polyketide synthase split module
rcsb
source organism Bacillus subtilis (strain 168)
total genus 78
structure length 273
sequence length 273
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-09-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.129.110 Alpha Beta Roll Thiol Ester Dehydrase; Chain A Thiol Ester Dehydrase; Chain A 5e1vA00
3HRQA 3KG6A 4U3VA 3KG9A 3HRRA 4OOCA 5BP2A 4LN9A 3KG7A 2VZ8A 3EL6A 5E1VA 5BP3A 5KKUA 2VZ9A 4KC5A
chains in the Genus database with same CATH superfamily
4HZNA 4W78B 4RV2B 3AZAA 1Q4TA 1PN4A 2HLJA 2PIMA 2CYEA 3AZBA 1PN2A 2VKZG 4RLWA 4MOCA 2F3XA 3KG8A 3P3IA 2Q78A 2OKIA 1Y7UA 3KX8A 1VI8A 4KC5A 3KHPA 5BP2A 3SPSA 4I45A 3LBEA 1BVQA 3KH8A 5DIOA 2FUJA 2O6BA 2OAFA 2QWZA 3IR3A 3R34A 2GLVA 4A12A 3LWGA 4ZRBA 2GLLA 3HRRA 5CPGA 3CF8A 2O6UA 4ZJBA 4AE7A 4XY5A 3EL6A 1J1YA 3DP2A 2VZ8A 2HX5A 2OWNA 5SZZA 5T06A 4A0ZA 3R36A 3B18A 3F1TA 3D6XA 4RLUA 5T02A 1WLUA 2GVHA 3KX7A 5BYUA 3HMJG 3B7JA 2QQPA 4OOBA 3LZ7A 5BUYA 2CY9A 5F6RA 3DP1A 4FQ9A 3E1EA 2C2IA 3DOYA 4A0XA 3AZ8A 3CF9A 3KG9A 3BJKA 4RLTA 1TBUA 1LO9A 4ZRFA 1T82A 4K4DA 3KW1A 5BP3A 5KKUA 4K00A 2OV9A 3E8PA 3LW3A 4QDAA 5SZYA 3R37A 2UV8G 4RLJA 4K02A 3KUVA 2F0XA 1WLVA 4ZV3A 1YOCA 4RLWB 2EGRA 5SZVA 5HWFA 3KUWA 3KVIA 3ZH6A 3CJYA 3DOZA 4OOCA 1OHFA 4M20A 3BNVA 3GEKA 3R3BA 4K4AA 4CL6A 3ED0A 3P2QA 4QD7A 2ESSA 3KV7A 4RMMA 2PFCA 3HDUA 2GF6A 4YBVA 5BUWA 5HZ4A 3ZH5A 3KG7A 4QFWA 5E1VA 3R3DA 4R9ZA 4QDBA 4ZW0A 4B0JA 3KVUA 1WN3A 1Z6BA 3D6LA 2B6EA 1LO7A 2EGJA 3DP3A 4K4CA 3RD7A 1MKBA 4RLUB 3DP0A 1S5UA 4AE8A 4K4BA 3KV8A 4QD9A 4WNBA 2F41A 3FRNA 1Q4UA 3F5OA 3BBJA 3HRQA 4RV2A 1ZKIA 1SH8A 2AV9A 3TEAA 1MKAA 3R35A 2B3MA 3R3AA 4B8UA 4RLTB 3P3FA 1ZHGA 2EGIA 1SC0A 5HD6A 1IXLA 1Q6WA 1S9CA 3D04A 3E29A 3P2SA 4QD8A 3LBBA 4H4GA 3R3FA 4RLJB 4B0IA 5HMBA 2H4UA 4HZOA 4W78A 4A0YA 2XFLA 5SZUA 3R87A 2FS2A 2OIWA 5EGJA 5KL9A 3Q62A 2CWZA 4I82A 4IENA 3S6PA 1VH5A 4XY6A 4B0BA 2Q2BA 4MTUA 1C8UA 5EGKA 4MOBA 5EO4A 5T07A 3R3CA 5EGLA 2V1OA 1PSUA 3ZH7A 1IQ6A 5HMCA 2EISA 1WM6A 2VZ9A 4NCPA 3U0AA 4MZQA 4ORDA 4E3EA 3AZ9A 3NWZA 3ZH7B 4K49A 3QY3A 3WEWA 4I4JA 2PRXA 1SBKA 4I83A 1Q4SA 2GLMA 4WNBB 4KEHA 1NJKA 4U3VA 3HM0A 4B0CA 4GAHA 3S4KA 4LN9A 4HZPA 1Z54A 3ESIA 1VH9A 5EO2A 3CK1A 5BUXA 3K67A 2XEMA 2BI0A 3DKZA 3KVZA 2QQ2A 3KG6A 2W3XA 2PZHA 2GLPA 4GAKA 4R4UA 2OKHA 1VPMA 2NUJA 3B7KA 1U1ZA 3OMLA 2DSLA 3EXZA 3P2RA 2O6TA 2O5UA 2HBOA 3QOOA 4FFUA 3RQBA 3LMBA 1LO8A 3R32A 5DM5A 5EP5A 1YLIA
chains in the Genus database with same CATH topology
3RD7A 3KG9A 2VKZG 3ZH7A 3KG8A 5BP3A 5KKUA 2VZ9A 3FRNA 4KC5A 3U0AA 3BBJA 3HRQA 5BP2A 2UV8G 3ZH7B 3CJYA 4U3VA 3HRRA 4OOCA 1OHFA 4LN9A 3EL6A 2VZ8A 3B18A 2PFCA 3KG6A 4R4UA 3ZH6A 3HMJG 3ZH5A 3S6PA 2QQPA 3RQBA 3KG7A 4QFWA 5E1VA 4R9ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HRQ A;  3KG6 A;  4U3V A;  3KG9 A;  3HRR A;  4OOC A;  5BP2 A;  4LN9 A;  3KG7 A;  2VZ8 A;  3EL6 A;  5E1V A;  5BP3 A;  5KKU A;  2VZ9 A;  4KC5 A; 
#chains in the Genus database with same CATH topology
 4HZN A;  4W78 B;  4RV2 B;  3AZA A;  1Q4T A;  1PN4 A;  2HLJ A;  2PIM A;  2CYE A;  3AZB A;  1PN2 A;  2VKZ G;  4RLW A;  4MOC A;  2F3X A;  3KG8 A;  3P3I A;  2Q78 A;  2OKI A;  1Y7U A;  3KX8 A;  1VI8 A;  4KC5 A;  3KHP A;  5BP2 A;  3SPS A;  4I45 A;  3LBE A;  1BVQ A;  3KH8 A;  5DIO A;  2FUJ A;  2O6B A;  2OAF A;  2QWZ A;  3IR3 A;  3R34 A;  2GLV A;  4A12 A;  3LWG A;  4ZRB A;  2GLL A;  3HRR A;  5CPG A;  3CF8 A;  2O6U A;  4ZJB A;  4AE7 A;  4XY5 A;  3EL6 A;  1J1Y A;  3DP2 A;  2VZ8 A;  2HX5 A;  2OWN A;  5SZZ A;  5T06 A;  4A0Z A;  3R36 A;  3B18 A;  3F1T A;  3D6X A;  4RLU A;  5T02 A;  1WLU A;  2GVH A;  3KX7 A;  5BYU A;  3HMJ G;  3B7J A;  2QQP A;  4OOB A;  3LZ7 A;  5BUY A;  2CY9 A;  5F6R A;  3DP1 A;  4FQ9 A;  3E1E A;  2C2I A;  3DOY A;  4A0X A;  3AZ8 A;  3CF9 A;  3KG9 A;  3BJK A;  4RLT A;  1TBU A;  1LO9 A;  4ZRF A;  1T82 A;  4K4D A;  3KW1 A;  5BP3 A;  5KKU A;  4K00 A;  2OV9 A;  3E8P A;  3LW3 A;  4QDA A;  5SZY A;  3R37 A;  2UV8 G;  4RLJ A;  4K02 A;  3KUV A;  2F0X A;  1WLV A;  4ZV3 A;  1YOC A;  4RLW B;  2EGR A;  5SZV A;  5HWF A;  3KUW A;  3KVI A;  3ZH6 A;  3CJY A;  3DOZ A;  4OOC A;  1OHF A;  4M20 A;  3BNV A;  3GEK A;  3R3B A;  4K4A A;  4CL6 A;  3ED0 A;  3P2Q A;  4QD7 A;  2ESS A;  3KV7 A;  4RMM A;  2PFC A;  3HDU A;  2GF6 A;  4YBV A;  5BUW A;  5HZ4 A;  3ZH5 A;  3KG7 A;  4QFW A;  5E1V A;  3R3D A;  4R9Z A;  4QDB A;  4ZW0 A;  4B0J A;  3KVU A;  1WN3 A;  1Z6B A;  3D6L A;  2B6E A;  1LO7 A;  2EGJ A;  3DP3 A;  4K4C A;  3RD7 A;  1MKB A;  4RLU B;  3DP0 A;  1S5U A;  4AE8 A;  4K4B A;  3KV8 A;  4QD9 A;  4WNB A;  2F41 A;  3FRN A;  1Q4U A;  3F5O A;  3BBJ A;  3HRQ A;  4RV2 A;  1ZKI A;  1SH8 A;  2AV9 A;  3TEA A;  1MKA A;  3R35 A;  2B3M A;  3R3A A;  4B8U A;  4RLT B;  3P3F A;  1ZHG A;  2EGI A;  1SC0 A;  5HD6 A;  1IXL A;  1Q6W A;  1S9C A;  3D04 A;  3E29 A;  3P2S A;  4QD8 A;  3LBB A;  4H4G A;  3R3F A;  4RLJ B;  4B0I A;  5HMB A;  2H4U A;  4HZO A;  4W78 A;  4A0Y A;  2XFL A;  5SZU A;  3R87 A;  2FS2 A;  2OIW A;  5EGJ A;  5KL9 A;  3Q62 A;  2CWZ A;  4I82 A;  4IEN A;  3S6P A;  1VH5 A;  4XY6 A;  4B0B A;  2Q2B A;  4MTU A;  1C8U A;  5EGK A;  4MOB A;  5EO4 A;  5T07 A;  3R3C A;  5EGL A;  2V1O A;  1PSU A;  3ZH7 A;  1IQ6 A;  5HMC A;  2EIS A;  1WM6 A;  2VZ9 A;  4NCP A;  3U0A A;  4MZQ A;  4ORD A;  4E3E A;  3AZ9 A;  3NWZ A;  3ZH7 B;  4K49 A;  3QY3 A;  3WEW A;  4I4J A;  2PRX A;  1SBK A;  4I83 A;  1Q4S A;  2GLM A;  4WNB B;  4KEH A;  1NJK A;  4U3V A;  3HM0 A;  4B0C A;  4GAH A;  3S4K A;  4LN9 A;  4HZP A;  1Z54 A;  3ESI A;  1VH9 A;  5EO2 A;  3CK1 A;  5BUX A;  3K67 A;  2XEM A;  2BI0 A;  3DKZ A;  3KVZ A;  2QQ2 A;  3KG6 A;  2W3X A;  2PZH A;  2GLP A;  4GAK A;  4R4U A;  2OKH A;  1VPM A;  2NUJ A;  3B7K A;  1U1Z A;  3OML A;  2DSL A;  3EXZ A;  3P2R A;  2O6T A;  2O5U A;  2HBO A;  3QOO A;  4FFU A;  3RQB A;  3LMB A;  1LO8 A;  3R32 A;  5DM5 A;  5EP5 A;  1YLI A; 
#chains in the Genus database with same CATH homology
 3RD7 A;  3KG9 A;  2VKZ G;  3ZH7 A;  3KG8 A;  5BP3 A;  5KKU A;  2VZ9 A;  3FRN A;  4KC5 A;  3U0A A;  3BBJ A;  3HRQ A;  5BP2 A;  2UV8 G;  3ZH7 B;  3CJY A;  4U3V A;  3HRR A;  4OOC A;  1OHF A;  4LN9 A;  3EL6 A;  2VZ8 A;  3B18 A;  2PFC A;  3KG6 A;  4R4U A;  3ZH6 A;  3HMJ G;  3ZH5 A;  3S6P A;  2QQP A;  3RQB A;  3KG7 A;  4QFW A;  5E1V A;  4R9Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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