5E79O

Macromolecular diffractive imaging using imperfect crystals
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
243
structure length
243
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Photosystem II protein D1 1
publication title Macromolecular diffractive imaging using imperfect crystals.
pubmed doi rcsb
total genus 55
structure length 243
sequence length 243
chains with identical sequence o
ec nomenclature
pdb deposition date 2015-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5e79O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 5e79O02
5GTIO 4IL6O 5G39A 5H2FO 2AXTO 5G3AA 3JCUO 3A0HO 5E79O 5TISO 4PJ0O 5G38A 5KAIO 5KAFO 4UB8O 5B66O 1S5LO 3KZIO 5B5EO 4UB6O 3A0BO 5GTHO 3WU2O
chains in the Genus database with same CATH superfamily
4Z3TA 3QRCA 3SY9A 4RLCA 5GTIO 2KZ7B 4FSOA 4LSEA 2ODJA 2XMXA 2ZFGA 3LK2A 2GE4A 4C4VB 3PF1A 2PORA 1P4TA 3SYSA 5T5FA 2JQYA 2XTRA 4RL9A 2N2MA 1MM4A 1ORMA 1ZHWA 3EMNX 2F1CX 2XG6A 2KXPB 3PRNA 2ZLDA 4FUVA 3A2SX 4C00A 5JDPA 1QJPA 3AAEA 3VE2A 3WI4A 5KAFO 2MNHA 2J1NA 4FOZA 2WJRA 1YS5A 3FYXA 3LK42 4QQ1A 4AZLA 3PQSA 5GV0A 3RBHA 1GFNA 3AA7B 3KZIO 5AFUK 3PORA 4O4UA 4UB6O 3A0BO 3AAAB 1Q9GA 4D65A 2WJQA 2Y0LA 3VZWX 2R89A 2Y7SA 4AYNA 3K19A 4RJWA 3VZUX 3VE1A 2ERVA 3TZGA 4N58A 2M07A 4FRTA 4JFBA 5AFUL 3HOLA 4AKMA 4O3ZA 3SY7A 5H2FO 1PHOA 4B61A 4RLBA 5IYUA 2AXTO 2KC0A 5DL7A 2R4PA 1BXWA 1IZNB 4RJXA 2OMFA 4CTDA 2XE2A 1BT9A 4G75A 2QTKA 2R4NA 3BRZA 5G38A 1ZHTA 1GFMA 3HOEA 4UB8O 3LK41 4FESA 1OPFA 4LSHA 3UU2A 3AA6B 4FSPA 5EE2A 4K3CA 3AA0B 3LK3A 3HW9A 2XE3A 4FZNA 3SYBA 2J4UP 2O4VA 3UAQA 4GHBA 3AA1B 4FZMA 4AKRA 5ADXK 1Q9FA 1BH3A 3PQUA 5DL6A 1GFQA 2IWWA 4D5UA 4FRXA 3G7GA 2KZ7A 3DWOX 5G39A 4N75A 1QJ9A 2N2LA 4AUIA 3V8UA 3VY8X 1T16A 2PRNA 3DZMA 1HXTA 3LK2B 4GF4A 3C5OA 4GCQA 4C4VA 7PRNA 5ADXL 2X27X 3DA3A 3VZTX 4AYDC 1H6S1 3NJTA 1MPFA 4D64A 2FGRA 2KXPA 4JCHA 4XNKA 3JTYA 5FVNA 4LSIA 2F1TA 2M06A 4O3YA 4O3WA 4PJ0O 1PRNA 3AAEB 2MHLA 2Y2XA 2K4TA 2W80C 1G90A 4F4BA 3DWNA 4FMSA 4PR7A 5DL8A 5B66O 1GFPA 2K0LA 2R88A 2Y0KA 3AA7A 1E54A 2R4OA 3BRYA 4AYID 5B5EO 2LHFA 3AAAA 2XE1A 1ZHZA 5D5DA 2F1VA 2Y0HA 1HXUA 3DA4A 1THQA 4E1TA 1MM5A 4FZLA 4GCSA 1ZHYA 1T1LA 4IL6O 4LSFA 5G26A 4KR8A 3VY9X 2R4LA 2X9KA 3PGSA 6PRNA 1OSMA 3T20A 3BS0A 2IWVA 3PGRA 3KVDD 4N59A 3NSGA 2KDYA 4N74A 2FGQX 3GP6A 2R8AA 3POXA 5G3AA 4O4XA 5PRNA 3JCUO 4FT6A 1IZNA 1ZHXA 2LFUA 2XTQA 2XE5A 3A0HO 5E79O 5TISO 4C69X 3O0EA 4GCPA 4KR4A 1HXXA 4BUMX 5KAIO 4AYMC 4AYEC 5DL5A 4KRAA 4K3BA 4E1SA 4AFKA 8PRNA 2W81C 2YNKA 3AA6A 3T24A 1S5LO 3AA0A 3SZDA 3T0SA 1GFOA 3LK3B 3HWBA 3WI5A 3POQA 3POUA 4O3XB 3QRAA 4O49A 1QJ8A 2YPVA 3PGUA 4PUXA 4G76A 4U9CA 3AA1A 4AKRB 2WVPA 5GTHO 2JMMA 4XNLA 3UPGA 3WU2O 3SZVA 4FQEA
chains in the Genus database with same CATH topology
5GTIO 4IL6O 5G39A 5H2FO 2AXTO 5G3AA 3JCUO 3A0HO 5E79O 5TISO 4PJ0O 5G38A 5KAIO 5KAFO 4UB8O 5B66O 1S5LO 3KZIO 5B5EO 4UB6O 3A0BO 5GTHO 3WU2O
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GTI O;  4IL6 O;  5G39 A;  5H2F O;  2AXT O;  5G3A A;  3JCU O;  3A0H O;  5E79 O;  5TIS O;  4PJ0 O;  5G38 A;  5KAI O;  5KAF O;  4UB8 O;  5B66 O;  1S5L O;  3KZI O;  5B5E O;  4UB6 O;  3A0B O;  5GTH O;  3WU2 O; 
#chains in the Genus database with same CATH topology
 4Z3T A;  3QRC A;  3SY9 A;  4RLC A;  5GTI O;  2KZ7 B;  4FSO A;  4LSE A;  2ODJ A;  2XMX A;  2ZFG A;  3LK2 A;  2GE4 A;  4C4V B;  3PF1 A;  2POR A;  1P4T A;  3SYS A;  5T5F A;  2JQY A;  2XTR A;  4RL9 A;  2N2M A;  1MM4 A;  1ORM A;  1ZHW A;  3EMN X;  2F1C X;  2XG6 A;  2KXP B;  3PRN A;  2ZLD A;  4FUV A;  3A2S X;  4C00 A;  5JDP A;  1QJP A;  3AAE A;  3VE2 A;  3WI4 A;  5KAF O;  2MNH A;  2J1N A;  4FOZ A;  2WJR A;  1YS5 A;  3FYX A;  3LK4 2;  4QQ1 A;  4AZL A;  3PQS A;  5GV0 A;  3RBH A;  1GFN A;  3AA7 B;  3KZI O;  5AFU K;  3POR A;  4O4U A;  4UB6 O;  3A0B O;  3AAA B;  1Q9G A;  4D65 A;  2WJQ A;  2Y0L A;  3VZW X;  2R89 A;  2Y7S A;  4AYN A;  3K19 A;  4RJW A;  3VZU X;  3VE1 A;  2ERV A;  3TZG A;  4N58 A;  2M07 A;  4FRT A;  4JFB A;  5AFU L;  3HOL A;  4AKM A;  4O3Z A;  3SY7 A;  5H2F O;  1PHO A;  4B61 A;  4RLB A;  5IYU A;  2AXT O;  2KC0 A;  5DL7 A;  2R4P A;  1BXW A;  1IZN B;  4RJX A;  2OMF A;  4CTD A;  2XE2 A;  1BT9 A;  4G75 A;  2QTK A;  2R4N A;  3BRZ A;  5G38 A;  1ZHT A;  1GFM A;  3HOE A;  4UB8 O;  3LK4 1;  4FES A;  1OPF A;  4LSH A;  3UU2 A;  3AA6 B;  4FSP A;  5EE2 A;  4K3C A;  3AA0 B;  3LK3 A;  3HW9 A;  2XE3 A;  4FZN A;  3SYB A;  2J4U P;  2O4V A;  3UAQ A;  4GHB A;  3AA1 B;  4FZM A;  4AKR A;  5ADX K;  1Q9F A;  1BH3 A;  3PQU A;  5DL6 A;  1GFQ A;  2IWW A;  4D5U A;  4FRX A;  3G7G A;  2KZ7 A;  3DWO X;  5G39 A;  4N75 A;  1QJ9 A;  2N2L A;  4AUI A;  3V8U A;  3VY8 X;  1T16 A;  2PRN A;  3DZM A;  1HXT A;  3LK2 B;  4GF4 A;  3C5O A;  4GCQ A;  4C4V A;  7PRN A;  5ADX L;  2X27 X;  3DA3 A;  3VZT X;  4AYD C;  1H6S 1;  3NJT A;  1MPF A;  4D64 A;  2FGR A;  2KXP A;  4JCH A;  4XNK A;  3JTY A;  5FVN A;  4LSI A;  2F1T A;  2M06 A;  4O3Y A;  4O3W A;  4PJ0 O;  1PRN A;  3AAE B;  2MHL A;  2Y2X A;  2K4T A;  2W80 C;  1G90 A;  4F4B A;  3DWN A;  4FMS A;  4PR7 A;  5DL8 A;  5B66 O;  1GFP A;  2K0L A;  2R88 A;  2Y0K A;  3AA7 A;  1E54 A;  2R4O A;  3BRY A;  4AYI D;  5B5E O;  2LHF A;  3AAA A;  2XE1 A;  1ZHZ A;  5D5D A;  2F1V A;  2Y0H A;  1HXU A;  3DA4 A;  1THQ A;  4E1T A;  1MM5 A;  4FZL A;  4GCS A;  1ZHY A;  1T1L A;  4IL6 O;  4LSF A;  5G26 A;  4KR8 A;  3VY9 X;  2R4L A;  2X9K A;  3PGS A;  6PRN A;  1OSM A;  3T20 A;  3BS0 A;  2IWV A;  3PGR A;  3KVD D;  4N59 A;  3NSG A;  2KDY A;  4N74 A;  2FGQ X;  3GP6 A;  2R8A A;  3POX A;  5G3A A;  4O4X A;  5PRN A;  3JCU O;  4FT6 A;  1IZN A;  1ZHX A;  2LFU A;  2XTQ A;  2XE5 A;  3A0H O;  5E79 O;  5TIS O;  4C69 X;  3O0E A;  4GCP A;  4KR4 A;  1HXX A;  4BUM X;  5KAI O;  4AYM C;  4AYE C;  5DL5 A;  4KRA A;  4K3B A;  4E1S A;  4AFK A;  8PRN A;  2W81 C;  2YNK A;  3AA6 A;  3T24 A;  1S5L O;  3AA0 A;  3SZD A;  3T0S A;  1GFO A;  3LK3 B;  3HWB A;  3WI5 A;  3POQ A;  3POU A;  4O3X B;  3QRA A;  4O49 A;  1QJ8 A;  2YPV A;  3PGU A;  4PUX A;  4G76 A;  4U9C A;  3AA1 A;  4AKR B;  2WVP A;  5GTH O;  2JMM A;  4XNL A;  3UPG A;  3WU2 O;  3SZV A;  4FQE A; 
#chains in the Genus database with same CATH homology
 5GTI O;  4IL6 O;  5G39 A;  5H2F O;  2AXT O;  5G3A A;  3JCU O;  3A0H O;  5E79 O;  5TIS O;  4PJ0 O;  5G38 A;  5KAI O;  5KAF O;  4UB8 O;  5B66 O;  1S5L O;  3KZI O;  5B5E O;  4UB6 O;  3A0B O;  5GTH O;  3WU2 O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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