5EENA

Crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with belinostat
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
357
structure length
357
Chain Sequence
PITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Hdac6 protein
publication title Histone deacetylase 6 structure and molecular basis of catalysis and inhibition.
pubmed doi rcsb
source organism Danio rerio
total genus 142
structure length 357
sequence length 357
chains with identical sequence B
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2015-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5eenA00
5THSA 5EF8A 5G1CA 5DC8A 5G17A 2VQVA 2VQQA 2VCGA 3MAXA 4BKXB 4BZ7A 4CBTA 3MZ4A 4ZUOA 3EZTA 4ZURA 3RQDA 3F07A 1VKGA 3Q9BA 4QA6A 5G3WA 1ZZ0A 5ICNB 1T64A 3MENA 3MZ3A 3EW8A 4QA1A 5EFHA 5THTA 1C3RA 5D1DA 5THVA 4ZUMA 3ZNRA 5G11A 5DC6A 5G0IA 4ZUQA 4CQFA 1ZZ1A 4BZ9A 5EEMA 3C10A 5EFNA 3SFHA 3Q9EA 4BZ6A 1C3SA 2VQWG 5G0GA 5EEFA 4A69A 3ZNSA 5G13A 5EFJD 4QA0A 5G0HA 4BZ8A 5EENA 4LXZA 5EF7A 4BZ5A 5FUEA 3MZ7A 3F0RA 2V5WA 5LI3A 5FCWA 4ZUNA 2GH6A 3F06A 5IWGA 5THUA 1W22A 3Q9CA 5JI5A 4LY1A 5D1BA 5DC7A 4CBYA 5IX0A 3SFFA 5DC5A 5G0XA 2VQJA 4RN2A 3EWFA 3Q9FA 1T69A 4RN0A 5EEIA 4QA4A 1ZZ3A 5A2SA 4ZUPA 5EEKA 5EFKB 4RN1A 5G0JA 3EZPA 4QA7A 4QA3A 5G0YA 5EFGA 1C3PA 5D1CA 3C0YA 5G12A 1T67A 3MZ6A 5EFBD 5G10A 5G1BA 3C0ZA 2V5XA 4QA5A 4QA2A 5BWZA 2VQOA 2VQMA 5G1AA
chains in the Genus database with same CATH superfamily
2ZAVA 5THSA 3MMRA 3E8ZA 1HQGA 5EF8A 4Q3RC 3SL0A 5G1CA 4Q3UA 5DC8A 5G17A 2VCGA 2VQVA 2VQQA 3MAXA 4BKXB 4BZ7A 4CBTA 1P8RA 2AEBA 3NIOA 3MZ4A 4ZUOA 4RHLA 3E6VA 3EZTA 4IE3A 3NIPA 4ZURA 4Q3TA 3RQDA 1TBLA 3F07A 5RLAA 1VKGA 1XFKA 4MYNA 3Q9BA 4QA6A 1GQ7A 5G3WA 4DZ4A 3SKKA 3DJ8A 1ZZ0A 5ICNB 1T64A 3MENA 3MFVA 4Q3RA 3MZ3A 4IU0A 4Q41A 4GSMA 3EW8A 4QA1A 1TBJA 4RHKA 5EFHA 5THTA 3CEVA 1C3RA 1GQ6A 5D1DA 5THVA 1D3VA 4ZUMA 1T5GA 3ZNRA 4CEVA 4GWDA 4ITYA 5DC6A 5G11A 1TBHA 2PLLA 1WOHA 4RLAA 3THHA 3LP4A 3MJLA 5G0IA 2EF4A 4ZUQA 4CQFA 1ZZ1A 1T4TA 3GMZA 4BZ9A 5EEMA 3C10A 2A0MA 4HZEA 3THJA 1P8NA 1HQ5A 5EFNA 3SFHA 3Q9EA 4BZ6A 4MXRA 1WVBA 3LP7A 1C3SA 2VQWG 5G0GA 5EEFA 4Q3QA 3LHLA 4A69A 3ZNSA 5G13A 5EFJD 4Q3SA 4QA0A 4RHJA 5G0HA 4G3HA 5EENA 1TA1A 4IXVA 4BZ8A 4LXZA 4Q42A 5EF7A 4RHIA 1HQXA 4BZ5A 5FUEA 1R1OA 1T5FA 3MZ7A 3NIQA 3E9BA 4IU4A 2RLAA 1T4RA 1WVAA 2PHOA 1ZPGA 4IU5A 3F0RA 1CEVA 2V5WA 5LI3A 5FCWA 4ZUNA 2GH6A 3F06A 5IWGA 1PQ3A 1WOIA 1T4SA 4FCKA 4RHQA 3M1RA 5THUA 1W22A 4Q40A 3Q9CA 5JI5A 3F80A 3KV2A 4LY1A 1T4PA 4Q3VA 5D1BA 5DC7A 4CBYA 5IX0A 4FCIA 3SFFA 4IU1A 5DC5A 3GN0A 5G0XA 2VQJA 4I06A 4RN2A 3TH7A 3EWFA 3PZLA 3SL1A 5CEVA 5HJ9A 4MYFA 4GWCA 4Q3PA 1T69A 2EF5A 3Q9FA 4RN0A 5EEIA 4QA4A 1ZZ3A 5A2SA 2CEVA 4GSZA 4ZUPA 1HQFA 5EEKA 1P8SA 5EFKB 1P8MA 4RN1A 5G0JA 3TF3A 3EZPA 4QA7A 4QA3A 5G0YA 5EFGA 3SJTA 1C3PA 1P8QA 5D1CA 3C0YA 5G12A 1T67A 3MZ6A 4RHMA 1WOGA 5EFBD 5G10A 1P8PA 5G1BA 2PHAA 1P8OA 3C0ZA 4IE1A 4HWWA 4MYLA 3THEA 3MFWA 1ZPEA 1HQHA 2V5XA 4IE2A 4QA5A 4QA2A 4GSVA 5BWZA 2VQOA 2VQMA 3E8QA 3RLAA 2EIVA 5G1AA 3E6KA 4IXUA 5HJAA 4MYKA 1RLAA 4HXQA
chains in the Genus database with same CATH topology
5THSA 5EF8A 5G1CA 5DC8A 5G17A 2VQVA 2VQQA 2VCGA 3MAXA 4BKXB 4BZ7A 4CBTA 3MZ4A 4ZUOA 3EZTA 4ZURA 3RQDA 3F07A 1VKGA 3Q9BA 4QA6A 5G3WA 1ZZ0A 5ICNB 1T64A 3MENA 3MZ3A 3EW8A 4QA1A 5EFHA 5THTA 1C3RA 5D1DA 5THVA 4ZUMA 3ZNRA 5G11A 5DC6A 5G0IA 4ZUQA 4CQFA 1ZZ1A 4BZ9A 5EEMA 3C10A 5EFNA 3SFHA 3Q9EA 4BZ6A 1C3SA 2VQWG 5G0GA 5EEFA 4A69A 3ZNSA 5G13A 5EFJD 4QA0A 5G0HA 4BZ8A 5EENA 4LXZA 5EF7A 4BZ5A 5FUEA 3MZ7A 3F0RA 2V5WA 5LI3A 5FCWA 4ZUNA 2GH6A 3F06A 5IWGA 5THUA 1W22A 3Q9CA 5JI5A 4LY1A 5D1BA 5DC7A 4CBYA 5IX0A 3SFFA 5DC5A 5G0XA 2VQJA 4RN2A 3EWFA 3Q9FA 1T69A 4RN0A 5EEIA 4QA4A 1ZZ3A 5A2SA 4ZUPA 5EEKA 5EFKB 4RN1A 5G0JA 3EZPA 4QA7A 4QA3A 5G0YA 5EFGA 1C3PA 5D1CA 3C0YA 5G12A 1T67A 3MZ6A 5EFBD 5G10A 5G1BA 3C0ZA 2V5XA 4QA5A 4QA2A 5BWZA 2VQOA 2VQMA 5G1AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5THS A;  5EF8 A;  5G1C A;  5DC8 A;  5G17 A;  2VQV A;  2VQQ A;  2VCG A;  3MAX A;  4BKX B;  4BZ7 A;  4CBT A;  3MZ4 A;  4ZUO A;  3EZT A;  4ZUR A;  3RQD A;  3F07 A;  1VKG A;  3Q9B A;  4QA6 A;  5G3W A;  1ZZ0 A;  5ICN B;  1T64 A;  3MEN A;  3MZ3 A;  3EW8 A;  4QA1 A;  5EFH A;  5THT A;  1C3R A;  5D1D A;  5THV A;  4ZUM A;  3ZNR A;  5G11 A;  5DC6 A;  5G0I A;  4ZUQ A;  4CQF A;  1ZZ1 A;  4BZ9 A;  5EEM A;  3C10 A;  5EFN A;  3SFH A;  3Q9E A;  4BZ6 A;  1C3S A;  2VQW G;  5G0G A;  5EEF A;  4A69 A;  3ZNS A;  5G13 A;  5EFJ D;  4QA0 A;  5G0H A;  4BZ8 A;  5EEN A;  4LXZ A;  5EF7 A;  4BZ5 A;  5FUE A;  3MZ7 A;  3F0R A;  2V5W A;  5LI3 A;  5FCW A;  4ZUN A;  2GH6 A;  3F06 A;  5IWG A;  5THU A;  1W22 A;  3Q9C A;  5JI5 A;  4LY1 A;  5D1B A;  5DC7 A;  4CBY A;  5IX0 A;  3SFF A;  5DC5 A;  5G0X A;  2VQJ A;  4RN2 A;  3EWF A;  3Q9F A;  1T69 A;  4RN0 A;  5EEI A;  4QA4 A;  1ZZ3 A;  5A2S A;  4ZUP A;  5EEK A;  5EFK B;  4RN1 A;  5G0J A;  3EZP A;  4QA7 A;  4QA3 A;  5G0Y A;  5EFG A;  1C3P A;  5D1C A;  3C0Y A;  5G12 A;  1T67 A;  3MZ6 A;  5EFB D;  5G10 A;  5G1B A;  3C0Z A;  2V5X A;  4QA5 A;  4QA2 A;  5BWZ A;  2VQO A;  2VQM A;  5G1A A; 
#chains in the Genus database with same CATH topology
 2ZAV A;  5THS A;  3MMR A;  3E8Z A;  1HQG A;  5EF8 A;  4Q3R C;  3SL0 A;  5G1C A;  4Q3U A;  5DC8 A;  5G17 A;  2VCG A;  2VQV A;  2VQQ A;  3MAX A;  4BKX B;  4BZ7 A;  4CBT A;  1P8R A;  2AEB A;  3NIO A;  3MZ4 A;  4ZUO A;  4RHL A;  3E6V A;  3EZT A;  4IE3 A;  3NIP A;  4ZUR A;  4Q3T A;  3RQD A;  1TBL A;  3F07 A;  5RLA A;  1VKG A;  1XFK A;  4MYN A;  3Q9B A;  4QA6 A;  1GQ7 A;  5G3W A;  4DZ4 A;  3SKK A;  3DJ8 A;  1ZZ0 A;  5ICN B;  1T64 A;  3MEN A;  3MFV A;  4Q3R A;  3MZ3 A;  4IU0 A;  4Q41 A;  4GSM A;  3EW8 A;  4QA1 A;  1TBJ A;  4RHK A;  5EFH A;  5THT A;  3CEV A;  1C3R A;  1GQ6 A;  5D1D A;  5THV A;  1D3V A;  4ZUM A;  1T5G A;  3ZNR A;  4CEV A;  4GWD A;  4ITY A;  5DC6 A;  5G11 A;  1TBH A;  2PLL A;  1WOH A;  4RLA A;  3THH A;  3LP4 A;  3MJL A;  5G0I A;  2EF4 A;  4ZUQ A;  4CQF A;  1ZZ1 A;  1T4T A;  3GMZ A;  4BZ9 A;  5EEM A;  3C10 A;  2A0M A;  4HZE A;  3THJ A;  1P8N A;  1HQ5 A;  5EFN A;  3SFH A;  3Q9E A;  4BZ6 A;  4MXR A;  1WVB A;  3LP7 A;  1C3S A;  2VQW G;  5G0G A;  5EEF A;  4Q3Q A;  3LHL A;  4A69 A;  3ZNS A;  5G13 A;  5EFJ D;  4Q3S A;  4QA0 A;  4RHJ A;  5G0H A;  4G3H A;  5EEN A;  1TA1 A;  4IXV A;  4BZ8 A;  4LXZ A;  4Q42 A;  5EF7 A;  4RHI A;  1HQX A;  4BZ5 A;  5FUE A;  1R1O A;  1T5F A;  3MZ7 A;  3NIQ A;  3E9B A;  4IU4 A;  2RLA A;  1T4R A;  1WVA A;  2PHO A;  1ZPG A;  4IU5 A;  3F0R A;  1CEV A;  2V5W A;  5LI3 A;  5FCW A;  4ZUN A;  2GH6 A;  3F06 A;  5IWG A;  1PQ3 A;  1WOI A;  1T4S A;  4FCK A;  4RHQ A;  3M1R A;  5THU A;  1W22 A;  4Q40 A;  3Q9C A;  5JI5 A;  3F80 A;  3KV2 A;  4LY1 A;  1T4P A;  4Q3V A;  5D1B A;  5DC7 A;  4CBY A;  5IX0 A;  4FCI A;  3SFF A;  4IU1 A;  5DC5 A;  3GN0 A;  5G0X A;  2VQJ A;  4I06 A;  4RN2 A;  3TH7 A;  3EWF A;  3PZL A;  3SL1 A;  5CEV A;  5HJ9 A;  4MYF A;  4GWC A;  4Q3P A;  1T69 A;  2EF5 A;  3Q9F A;  4RN0 A;  5EEI A;  4QA4 A;  1ZZ3 A;  5A2S A;  2CEV A;  4GSZ A;  4ZUP A;  1HQF A;  5EEK A;  1P8S A;  5EFK B;  1P8M A;  4RN1 A;  5G0J A;  3TF3 A;  3EZP A;  4QA7 A;  4QA3 A;  5G0Y A;  5EFG A;  3SJT A;  1C3P A;  1P8Q A;  5D1C A;  3C0Y A;  5G12 A;  1T67 A;  3MZ6 A;  4RHM A;  1WOG A;  5EFB D;  5G10 A;  1P8P A;  5G1B A;  2PHA A;  1P8O A;  3C0Z A;  4IE1 A;  4HWW A;  4MYL A;  3THE A;  3MFW A;  1ZPE A;  1HQH A;  2V5X A;  4IE2 A;  4QA5 A;  4QA2 A;  4GSV A;  5BWZ A;  2VQO A;  2VQM A;  3E8Q A;  3RLA A;  2EIV A;  5G1A A;  3E6K A;  4IXU A;  5HJA A;  4MYK A;  1RLA A;  4HXQ A; 
#chains in the Genus database with same CATH homology
 5THS A;  5EF8 A;  5G1C A;  5DC8 A;  5G17 A;  2VQV A;  2VQQ A;  2VCG A;  3MAX A;  4BKX B;  4BZ7 A;  4CBT A;  3MZ4 A;  4ZUO A;  3EZT A;  4ZUR A;  3RQD A;  3F07 A;  1VKG A;  3Q9B A;  4QA6 A;  5G3W A;  1ZZ0 A;  5ICN B;  1T64 A;  3MEN A;  3MZ3 A;  3EW8 A;  4QA1 A;  5EFH A;  5THT A;  1C3R A;  5D1D A;  5THV A;  4ZUM A;  3ZNR A;  5G11 A;  5DC6 A;  5G0I A;  4ZUQ A;  4CQF A;  1ZZ1 A;  4BZ9 A;  5EEM A;  3C10 A;  5EFN A;  3SFH A;  3Q9E A;  4BZ6 A;  1C3S A;  2VQW G;  5G0G A;  5EEF A;  4A69 A;  3ZNS A;  5G13 A;  5EFJ D;  4QA0 A;  5G0H A;  4BZ8 A;  5EEN A;  4LXZ A;  5EF7 A;  4BZ5 A;  5FUE A;  3MZ7 A;  3F0R A;  2V5W A;  5LI3 A;  5FCW A;  4ZUN A;  2GH6 A;  3F06 A;  5IWG A;  5THU A;  1W22 A;  3Q9C A;  5JI5 A;  4LY1 A;  5D1B A;  5DC7 A;  4CBY A;  5IX0 A;  3SFF A;  5DC5 A;  5G0X A;  2VQJ A;  4RN2 A;  3EWF A;  3Q9F A;  1T69 A;  4RN0 A;  5EEI A;  4QA4 A;  1ZZ3 A;  5A2S A;  4ZUP A;  5EEK A;  5EFK B;  4RN1 A;  5G0J A;  3EZP A;  4QA7 A;  4QA3 A;  5G0Y A;  5EFG A;  1C3P A;  5D1C A;  3C0Y A;  5G12 A;  1T67 A;  3MZ6 A;  5EFB D;  5G10 A;  5G1B A;  3C0Z A;  2V5X A;  4QA5 A;  4QA2 A;  5BWZ A;  2VQO A;  2VQM A;  5G1A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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