5EIOC

Crystal structure of lysy from thermus thermophilus complexed with nadp+ and lysw-gamma-aminoadipic semialdehyde
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
46
structure length
46
Chain Sequence
b'MVGTCPECGAELRLENPELGELVVCEDCGAELEVVGLDPLRLEPAP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl
publication title Crystal Structure of the LysYLysW Complex from Thermus thermophilus.
pubmed doi rcsb
source organism Thermus thermophilus (strain hb27 / atcc baa-163 / dsm 7039)
molecule tags Oxidoreductase/biosynthetic protein
total genus 3
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2015-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF08271 TF_Zn_Ribbon TFIIB zinc-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.160 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 5eioC00
5K2ME 5EIOC 3VPBE 5EINC 3WWNB 3WWLA
chains in the Genus database with same CATH superfamily
2Y0SP 3B0AB 5IYDL 2WB1P 5GAHc 4GS7D 3H99A 2PVXA 4ZN3B 2GMGA 5GAGc 4YWMA 4G6BA 4ZN1B 2A69D 1QYBA 4QIWP 3HOVL 3KYVA 5M5XL 3GTML 5GAEc 1RYTA 3PZAA 1R0IA 5H1Sc 1FHMA 4ME3A 4AR3A 3P2AA 3RZ6A 5C4JL 2AYJA 3S2HL 3S1RL 3PWFA 1ZRPA 5AN9H 2KN9A 3PL5A 3S14L 6RXNA 5MGNA 1VZGA 7RXNA 1SMMA 1BQ8A 3KYWA 4JADA 3KYXA 3GTQL 2H12A 2NVQL 1BRFA 2B63L 2PMZP 2A68D 4AHWA 4AR5A 3S16L 5IYBL 2PYAA 1S2ZA 1LKPA 4AI1A 3H9CA 2M6PA 1RYQA 1RWDA 1WJVA 3LWOB 4C2M1 4POFA 2JA6L 2PSMC 1B2JA 1C09A 3IU3I 1RDVA 4E6YA 1H7VA 5M5YL 2M4VA 3H97A 1DVBA 2JA7L 1DX8A 1PFYA 5C44L 3QVDA 1Y1VL 2CR8A 3VPBE 4AYBP 5K2ME 5JVH1 3I4NL 2XJQA 4C3IL 4JAEA 2V0EA 1IU6A 5FJ8L 3MPSA 1B71A 4XXBB 3GTKL 3J7Y1 1OWCA 2JI3A 2RDVA 1YK4A 4YWLA 3WWLA 1B2OA 2C6AA 1IROA 2E2JL 1IRNA 4X6AL 4JAGA 1VCXA 2VL6A 5AI3A 1T9OA 2M6OA 1OWBA 4A93L 1R0GA 2PPTA 3KYUA 2ZIXA 2LCQA 3GTPL 3S2DL 1NXGA 2ERJA 2B5ID 1VZIA 1T9PA 2R93L 4AR6A 3SS2A 1Z92B 3PIP1 2NVTL 2JI1A 1SFOL 8RXNA 3LWVB 5M5WL 4V196 2ERSA 3HJWB 1F4LA 1B13A 1LKOA 3ZG6A 5DM71 1WCML 3M3YL 4C3JL 3HOZL 4BBRL 4POGA 2AUSB 2A6HD 3PIO1 5IYCL 1IU5A 4B8CD 1NNQA 2MS3A 2O5JD 1BQ9A 2E2HL 1PZXA 3GTGL 2CKAA 5MF6A 5MFZA 2XJPA 3PO3L 2NVXL 1ODHA 4TVMA 1LTLA 2YU9L 5C4XL 3NFPI 2NVYL 5RXNA 3RZTA 3GTJL 1E8JA 1TWCL 3LNLA 1BFYA 4AI0A 1YUXA 2XJTA 5AI2A 5C3EL 4BBSL 1K83L 4XGHA 3HOUL 3FDJA 5IP7L 3H3VM 3WWNB 3GTLL 2KKDA 4BY1L 2R7ZL 1R0HA 3K7AL 4A3BL 1FHHA 3H0GL 2RFKB 4WFN1 4LHNA 3QQCE 5GADc 3HKZP 1I6HL 3LPEB 4A3GL 3S1ML 3KYYA 4A3JL 1LKMA 3RZDL 3HAXC 2V3BB 1I3QL 1TWFL 2XJSA 3LWQB 1BE7A 3HOYL 2M4YA 2WAQP 2AQCA 1R0JA 3RYGA 5EINC 1R9TL 2K2DA 4AI2A 1IW7D 2Z3RB 1P7PA 2PVEA 1RB9A 5M3FL 1YV1A 3HOXL 3S1QL 3CQZL 2Z3QB 2VUML 1S24A 2QL0A 3MQKB 1PFUA 2XJVA 4K9FA 3P8BA 4LHLA 1Y1WL 3I4ML 2J9UB 4A3FL 1YUZA 1SMUA 2BE5D 2C6BA 3A44A 3S17L 1CAAA 3S1NL 1TWAL 5M3ML 1PFVA 4A3LL 2APOB 4U671 4AI3A 1YK5A 4RXNA 1QCVA 1SMWA 3PKJA 4BY7L 4A3CL 1JYBA 3K35A 1I50L 1RDGA 5MFPA 4JAFA 3H9BA 2V0FA 3RZOL 3J7Z1 3M4OL 2DSXA 2JA8L 4A3KL 4C3HL 3JR7A 1TWGL 2JI2A 2NYDA 1T9QA 3LWRB 5IY0A 3FKIL 4AHXA 3HOWL 3PO2L 2R92L 2XJUA 4A3DL 4TPUA 3GTOL 3HJYB 1S30A 4BXXL 4A3ML 3S15L 2XJRA 4UY81 1QQTA 4Y52L 2HVYC 1PFWA 5FLML 5JVG1 1TWHL 4A3IL 4A3EL 4Y7NL 3PKIA 2E2IL 5IP9L 5DM61 4AR4A 1NXEA 2A6ED 2L0ZA 5EIOC 2CKCA 3LWPB 4AHZA 2HR5A 5MLC3 3B08B 2JA5L 1CADA 1VZHA 3MSUA 1R0FA 2EY4E 4AHYA
chains in the Genus database with same CATH topology
5JVH1 5K2ME 2XJVA 4K9FA 3B0AB 3P8BA 5GAHc 4GS7D 2CKAA 5MF6A 5MFZA 2XJQA 4LHLA 2XJPA 4JAEA 2V0EA 1IU6A 2PVXA 2J9UB 4ZN3B 2GMGA 1ODHA 3MPSA 4YWMA 5GAGc 1YUZA 1B71A 4TVMA 1LTLA 4XXBB 4G6BA 3NFPI 1SMUA 2BE5D 2C6BA 3A44A 4ZN1B 5RXNA 1CAAA 3RZTA 3J7Y1 1E8JA 2A69D 1QYBA 1OWCA 2JI3A 3KYVA 2RDVA 1YK4A 4YWLA 3LNLA 3WWLA 1BFYA 4AI0A 5GAEc 4U671 1RYTA 3PZAA 1R0IA 4AI3A 1B2OA 5H1Sc 1YUXA 2XJTA 1FHMA 1YK5A 4ME3A 4RXNA 5AI2A 2C6AA 1QCVA 1IROA 4XGHA 4AR3A 3P2AA 3RZ6A 1SMWA 1IRNA 2AYJA 3PKJA 4JAGA 1JYBA 1VCXA 3K35A 3WWNB 3PWFA 1RDGA 1ZRPA 2VL6A 5MFPA 5AN9H 4JAFA 5AI3A 1T9OA 2KKDA 2KN9A 1R0HA 2M6OA 1OWBA 1FHHA 2V0FA 6RXNA 3J7Z1 1R0GA 5MGNA 2PPTA 1VZGA 4LHNA 4WFN1 3QQCE 7RXNA 2DSXA 5GADc 3KYUA 2ZIXA 1SMMA 1BQ8A 3KYWA 4JADA 3KYXA 2H12A 2LCQA 3LPEB 1BRFA 1NXGA 3KYYA 2A68D 1LKMA 4AHWA 2JI2A 2ERJA 2B5ID 4AR5A 1VZIA 1T9PA 2NYDA 1T9QA 4AR6A 3SS2A 2V3BB 1Z92B 1S2ZA 2PYAA 3PIP1 1LKPA 4AI1A 5IY0A 2JI1A 2XJSA 2M6PA 1RYQA 4AHXA 1BE7A 2M4YA 1RWDA 8RXNA 2XJUA 1WJVA 4V196 4TPUA 1R0JA 2ERSA 3RYGA 1S30A 4POFA 5EINC 1B13A 1LKOA 2XJRA 4UY81 2PSMC 1B2JA 2K2DA 3ZG6A 5DM71 1C09A 4AI2A 1IW7D 2Z3RB 3IU3I 2PVEA 5JVG1 1RB9A 1YV1A 1RDVA 3PKIA 4E6YA 1H7VA 2M4VA 2Z3QB 4AR4A 5DM61 1DVBA 1NXEA 2A6ED 4POGA 2A6HD 2L0ZA 3PIO1 5EIOC 1DX8A 2CKCA 1IU5A 4B8CD 4AHZA 1S24A 2HR5A 2QL0A 3QVDA 5MLC3 3B08B 1CADA 1VZHA 1NNQA 2MS3A 2CR8A 1BQ9A 3MSUA 1R0FA 3VPBE 2O5JD 4AHYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5K2M E;  5EIO C;  3VPB E;  5EIN C;  3WWN B;  3WWL A; 
#chains in the Genus database with same CATH topology
 2Y0S P;  3B0A B;  5IYD L;  2WB1 P;  5GAH c;  4GS7 D;  3H99 A;  2PVX A;  4ZN3 B;  2GMG A;  5GAG c;  4YWM A;  4G6B A;  4ZN1 B;  2A69 D;  1QYB A;  4QIW P;  3HOV L;  3KYV A;  5M5X L;  3GTM L;  5GAE c;  1RYT A;  3PZA A;  1R0I A;  5H1S c;  1FHM A;  4ME3 A;  4AR3 A;  3P2A A;  3RZ6 A;  5C4J L;  2AYJ A;  3S2H L;  3S1R L;  3PWF A;  1ZRP A;  5AN9 H;  2KN9 A;  3PL5 A;  3S14 L;  6RXN A;  5MGN A;  1VZG A;  7RXN A;  1SMM A;  1BQ8 A;  3KYW A;  4JAD A;  3KYX A;  3GTQ L;  2H12 A;  2NVQ L;  1BRF A;  2B63 L;  2PMZ P;  2A68 D;  4AHW A;  4AR5 A;  3S16 L;  5IYB L;  2PYA A;  1S2Z A;  1LKP A;  4AI1 A;  3H9C A;  2M6P A;  1RYQ A;  1RWD A;  1WJV A;  3LWO B;  4C2M 1;  4POF A;  2JA6 L;  2PSM C;  1B2J A;  1C09 A;  3IU3 I;  1RDV A;  4E6Y A;  1H7V A;  5M5Y L;  2M4V A;  3H97 A;  1DVB A;  2JA7 L;  1DX8 A;  1PFY A;  5C44 L;  3QVD A;  1Y1V L;  2CR8 A;  3VPB E;  4AYB P;  5K2M E;  5JVH 1;  3I4N L;  2XJQ A;  4C3I L;  4JAE A;  2V0E A;  1IU6 A;  5FJ8 L;  3MPS A;  1B71 A;  4XXB B;  3GTK L;  3J7Y 1;  1OWC A;  2JI3 A;  2RDV A;  1YK4 A;  4YWL A;  3WWL A;  1B2O A;  2C6A A;  1IRO A;  2E2J L;  1IRN A;  4X6A L;  4JAG A;  1VCX A;  2VL6 A;  5AI3 A;  1T9O A;  2M6O A;  1OWB A;  4A93 L;  1R0G A;  2PPT A;  3KYU A;  2ZIX A;  2LCQ A;  3GTP L;  3S2D L;  1NXG A;  2ERJ A;  2B5I D;  1VZI A;  1T9P A;  2R93 L;  4AR6 A;  3SS2 A;  1Z92 B;  3PIP 1;  2NVT L;  2JI1 A;  1SFO L;  8RXN A;  3LWV B;  5M5W L;  4V19 6;  2ERS A;  3HJW B;  1F4L A;  1B13 A;  1LKO A;  3ZG6 A;  5DM7 1;  1WCM L;  3M3Y L;  4C3J L;  3HOZ L;  4BBR L;  4POG A;  2AUS B;  2A6H D;  3PIO 1;  5IYC L;  1IU5 A;  4B8C D;  1NNQ A;  2MS3 A;  2O5J D;  1BQ9 A;  2E2H L;  1PZX A;  3GTG L;  2CKA A;  5MF6 A;  5MFZ A;  2XJP A;  3PO3 L;  2NVX L;  1ODH A;  4TVM A;  1LTL A;  2YU9 L;  5C4X L;  3NFP I;  2NVY L;  5RXN A;  3RZT A;  3GTJ L;  1E8J A;  1TWC L;  3LNL A;  1BFY A;  4AI0 A;  1YUX A;  2XJT A;  5AI2 A;  5C3E L;  4BBS L;  1K83 L;  4XGH A;  3HOU L;  3FDJ A;  5IP7 L;  3H3V M;  3WWN B;  3GTL L;  2KKD A;  4BY1 L;  2R7Z L;  1R0H A;  3K7A L;  4A3B L;  1FHH A;  3H0G L;  2RFK B;  4WFN 1;  4LHN A;  3QQC E;  5GAD c;  3HKZ P;  1I6H L;  3LPE B;  4A3G L;  3S1M L;  3KYY A;  4A3J L;  1LKM A;  3RZD L;  3HAX C;  2V3B B;  1I3Q L;  1TWF L;  2XJS A;  3LWQ B;  1BE7 A;  3HOY L;  2M4Y A;  2WAQ P;  2AQC A;  1R0J A;  3RYG A;  5EIN C;  1R9T L;  2K2D A;  4AI2 A;  1IW7 D;  2Z3R B;  1P7P A;  2PVE A;  1RB9 A;  5M3F L;  1YV1 A;  3HOX L;  3S1Q L;  3CQZ L;  2Z3Q B;  2VUM L;  1S24 A;  2QL0 A;  3MQK B;  1PFU A;  2XJV A;  4K9F A;  3P8B A;  4LHL A;  1Y1W L;  3I4M L;  2J9U B;  4A3F L;  1YUZ A;  1SMU A;  2BE5 D;  2C6B A;  3A44 A;  3S17 L;  1CAA A;  3S1N L;  1TWA L;  5M3M L;  1PFV A;  4A3L L;  2APO B;  4U67 1;  4AI3 A;  1YK5 A;  4RXN A;  1QCV A;  1SMW A;  3PKJ A;  4BY7 L;  4A3C L;  1JYB A;  3K35 A;  1I50 L;  1RDG A;  5MFP A;  4JAF A;  3H9B A;  2V0F A;  3RZO L;  3J7Z 1;  3M4O L;  2DSX A;  2JA8 L;  4A3K L;  4C3H L;  3JR7 A;  1TWG L;  2JI2 A;  2NYD A;  1T9Q A;  3LWR B;  5IY0 A;  3FKI L;  4AHX A;  3HOW L;  3PO2 L;  2R92 L;  2XJU A;  4A3D L;  4TPU A;  3GTO L;  3HJY B;  1S30 A;  4BXX L;  4A3M L;  3S15 L;  2XJR A;  4UY8 1;  1QQT A;  4Y52 L;  2HVY C;  1PFW A;  5FLM L;  5JVG 1;  1TWH L;  4A3I L;  4A3E L;  4Y7N L;  3PKI A;  2E2I L;  5IP9 L;  5DM6 1;  4AR4 A;  1NXE A;  2A6E D;  2L0Z A;  5EIO C;  2CKC A;  3LWP B;  4AHZ A;  2HR5 A;  5MLC 3;  3B08 B;  2JA5 L;  1CAD A;  1VZH A;  3MSU A;  1R0F A;  2EY4 E;  4AHY A; 
#chains in the Genus database with same CATH homology
 5JVH 1;  5K2M E;  2XJV A;  4K9F A;  3B0A B;  3P8B A;  5GAH c;  4GS7 D;  2CKA A;  5MF6 A;  5MFZ A;  2XJQ A;  4LHL A;  2XJP A;  4JAE A;  2V0E A;  1IU6 A;  2PVX A;  2J9U B;  4ZN3 B;  2GMG A;  1ODH A;  3MPS A;  4YWM A;  5GAG c;  1YUZ A;  1B71 A;  4TVM A;  1LTL A;  4XXB B;  4G6B A;  3NFP I;  1SMU A;  2BE5 D;  2C6B A;  3A44 A;  4ZN1 B;  5RXN A;  1CAA A;  3RZT A;  3J7Y 1;  1E8J A;  2A69 D;  1QYB A;  1OWC A;  2JI3 A;  3KYV A;  2RDV A;  1YK4 A;  4YWL A;  3LNL A;  3WWL A;  1BFY A;  4AI0 A;  5GAE c;  4U67 1;  1RYT A;  3PZA A;  1R0I A;  4AI3 A;  1B2O A;  5H1S c;  1YUX A;  2XJT A;  1FHM A;  1YK5 A;  4ME3 A;  4RXN A;  5AI2 A;  2C6A A;  1QCV A;  1IRO A;  4XGH A;  4AR3 A;  3P2A A;  3RZ6 A;  1SMW A;  1IRN A;  2AYJ A;  3PKJ A;  4JAG A;  1JYB A;  1VCX A;  3K35 A;  3WWN B;  3PWF A;  1RDG A;  1ZRP A;  2VL6 A;  5MFP A;  5AN9 H;  4JAF A;  5AI3 A;  1T9O A;  2KKD A;  2KN9 A;  1R0H A;  2M6O A;  1OWB A;  1FHH A;  2V0F A;  6RXN A;  3J7Z 1;  1R0G A;  5MGN A;  2PPT A;  1VZG A;  4LHN A;  4WFN 1;  3QQC E;  7RXN A;  2DSX A;  5GAD c;  3KYU A;  2ZIX A;  1SMM A;  1BQ8 A;  3KYW A;  4JAD A;  3KYX A;  2H12 A;  2LCQ A;  3LPE B;  1BRF A;  1NXG A;  3KYY A;  2A68 D;  1LKM A;  4AHW A;  2JI2 A;  2ERJ A;  2B5I D;  4AR5 A;  1VZI A;  1T9P A;  2NYD A;  1T9Q A;  4AR6 A;  3SS2 A;  2V3B B;  1Z92 B;  1S2Z A;  2PYA A;  3PIP 1;  1LKP A;  4AI1 A;  5IY0 A;  2JI1 A;  2XJS A;  2M6P A;  1RYQ A;  4AHX A;  1BE7 A;  2M4Y A;  1RWD A;  8RXN A;  2XJU A;  1WJV A;  4V19 6;  4TPU A;  1R0J A;  2ERS A;  3RYG A;  1S30 A;  4POF A;  5EIN C;  1B13 A;  1LKO A;  2XJR A;  4UY8 1;  2PSM C;  1B2J A;  2K2D A;  3ZG6 A;  5DM7 1;  1C09 A;  4AI2 A;  1IW7 D;  2Z3R B;  3IU3 I;  2PVE A;  5JVG 1;  1RB9 A;  1YV1 A;  1RDV A;  3PKI A;  4E6Y A;  1H7V A;  2M4V A;  2Z3Q B;  4AR4 A;  5DM6 1;  1DVB A;  1NXE A;  2A6E D;  4POG A;  2A6H D;  2L0Z A;  3PIO 1;  5EIO C;  1DX8 A;  2CKC A;  1IU5 A;  4B8C D;  4AHZ A;  1S24 A;  2HR5 A;  2QL0 A;  3QVD A;  5MLC 3;  3B08 B;  1CAD A;  1VZH A;  1NNQ A;  2MS3 A;  2CR8 A;  1BQ9 A;  3MSU A;  1R0F A;  3VPB E;  2O5J D;  4AHY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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