5EJHA

Crystal structure of nad kinase v98s mutant from listeria monocytogenes
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
263
structure length
259
Chain Sequence
MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKSSYPLLKTTVKYKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSFPFWRRVHDSFIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords NAD kinase 1
publication title Crystal structure of NAD kinase 1 from Listeria monocytogenes: V98S mutant
rcsb
source organism Listeria monocytogenes
total genus 71
structure length 259
sequence length 263
ec nomenclature ec 2.7.1.23: NAD(+) kinase.
pdb deposition date 2015-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01513 NAD_kinase ATP-NAD kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.30 Mainly Beta Sandwich Tumour Suppressor Smad4 Probable inorganic polyphosphate/atp-NAD kinase; domain 2 5ejhA02
2I2BA 5DHTA 2I2DA 5DHQA 1Z0ZA 1YT5A 1U0TA 2Q5FA 1Y3IA 3V8QA 5EJGA 3V8RA 2I29A 3V80A 1Y3HA 1Z0UA 2I2AA 1U0RA 3V8MA 3V7WA 2I2CA 5DHPA 3V8NA 5DHRA 4DY6A 3V8PA 2AN1A 5EJHA 5EJFA 3AFOA 1SUWA 5DHUA 1Z0SA 2I1WA 3V7UA 5DHSA 3PFNA 5EJIA 3V7YA 4HAOA 2I2FA
chains in the Genus database with same CATH superfamily
1KHXA 2BRFA 2JQLA 2QV7A 2I2DA 3S40A 4EGXA 1YT5A 1U0TA 1QU5A 4WERA 1UJXA 3VZCA 3UNNA 5DHPA 4DY6A 3A77A 4JIVD 3HUEA 2AN1A 1YJMA 5EJHA 3AFOA 4QCJA 1J4LA 1DEVA 3HX1A 2KKLA 2I1WA 3V7UA 3VA4A 2JQJA 3I6UA 5C4VA 4JIWD 3T5PA 3GMJA 4KU0D 4D9VA 2I2BA 5DHTA 5JEKA 1WLNA 1LGQA 2XT9B 4H87A 1J4QA 1K2NA 4G2SA 1G6GA 3UN0A 2W3OA 1G88A 3VA1A 5JEJA 1Y3HA 1Z0UA 1U0RA 3V8MA 5DHRA 1MR1A 1QWTA 1K3JA 1MJSA 2KFUA 2P1RA 4L02A 2CSWA 2KB4A 1Z0SA 2JKDA 2BONA 5DHSA 1R21A 1KHUA 3UNMA 1MK2A 1GXCA 1J4PA 2A0TA 2PIEA 3POAA 5E50A 1U7VA 3DSHA 5JEMA 5A8IA 1UHTA 1K3NA 1J4KA 5JERA 5DHQA 1Z0ZA 4R9PA 5DJOA 1LGPA 4A4YA 1YJ5C 1DD1A 5EJGA 3V80A 2FF4A 3I0NA 2AFFA 3V7WA 2JPEA 3V8NA 4A0EA 3OUNA 3V8PA 2EH0A 2FEZA 2JQIA 3HUFA 1U7FA 3ELSA 1U7VB 3UMZA 1FHQA 4V24A 2G1LA 1J4OA 2I2FA 1K3QA 3UOTA 3VZDA 1MZKA 1ZOQA 1WV3A 3UV0A 1K2MA 3MDBA 5JEOA 1G3GA 2Q5FA 3I6WA 1FHRA 3GQSA 1Y3IA 3FM8A 3PO8A 3VZBA 4WRRA 2QVLA 3V8QA 2I29A 3V8RA 2I2AA 2I2CA 3I0MA 4JONA 2KB3A 3ELVA 1J2FA 1U7FB 2LC1A 3VPYA 5EJFA 1DMZA 2XXSA 1SUWA 5DHUA 1YGSA 4EJQA 3KT9A 3PFNA 5EJIA 3DITA 3V7YA 2JGRA 5JELA 5BVIA 4HAOA
chains in the Genus database with same CATH topology
2I2BA 5DHTA 2I2DA 5DHQA 1Z0ZA 1YT5A 1U0TA 2Q5FA 1Y3IA 3V8QA 5EJGA 3V8RA 2I29A 3V80A 1Y3HA 1Z0UA 2I2AA 1U0RA 3V8MA 3V7WA 2I2CA 5DHPA 3V8NA 5DHRA 4DY6A 3V8PA 2AN1A 5EJHA 5EJFA 3AFOA 1SUWA 5DHUA 1Z0SA 2I1WA 3V7UA 5DHSA 3PFNA 5EJIA 3V7YA 4HAOA 2I2FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I2B A;  5DHT A;  2I2D A;  5DHQ A;  1Z0Z A;  1YT5 A;  1U0T A;  2Q5F A;  1Y3I A;  3V8Q A;  5EJG A;  3V8R A;  2I29 A;  3V80 A;  1Y3H A;  1Z0U A;  2I2A A;  1U0R A;  3V8M A;  3V7W A;  2I2C A;  5DHP A;  3V8N A;  5DHR A;  4DY6 A;  3V8P A;  2AN1 A;  5EJH A;  5EJF A;  3AFO A;  1SUW A;  5DHU A;  1Z0S A;  2I1W A;  3V7U A;  5DHS A;  3PFN A;  5EJI A;  3V7Y A;  4HAO A;  2I2F A; 
#chains in the Genus database with same CATH topology
 1KHX A;  2BRF A;  2JQL A;  2QV7 A;  2I2D A;  3S40 A;  4EGX A;  1YT5 A;  1U0T A;  1QU5 A;  4WER A;  1UJX A;  3VZC A;  3UNN A;  5DHP A;  4DY6 A;  3A77 A;  4JIV D;  3HUE A;  2AN1 A;  1YJM A;  5EJH A;  3AFO A;  4QCJ A;  1J4L A;  1DEV A;  3HX1 A;  2KKL A;  2I1W A;  3V7U A;  3VA4 A;  2JQJ A;  3I6U A;  5C4V A;  4JIW D;  3T5P A;  3GMJ A;  4KU0 D;  4D9V A;  2I2B A;  5DHT A;  5JEK A;  1WLN A;  1LGQ A;  2XT9 B;  4H87 A;  1J4Q A;  1K2N A;  4G2S A;  1G6G A;  3UN0 A;  2W3O A;  1G88 A;  3VA1 A;  5JEJ A;  1Y3H A;  1Z0U A;  1U0R A;  3V8M A;  5DHR A;  1MR1 A;  1QWT A;  1K3J A;  1MJS A;  2KFU A;  2P1R A;  4L02 A;  2CSW A;  2KB4 A;  1Z0S A;  2JKD A;  2BON A;  5DHS A;  1R21 A;  1KHU A;  3UNM A;  1MK2 A;  1GXC A;  1J4P A;  2A0T A;  2PIE A;  3POA A;  5E50 A;  1U7V A;  3DSH A;  5JEM A;  5A8I A;  1UHT A;  1K3N A;  1J4K A;  5JER A;  5DHQ A;  1Z0Z A;  4R9P A;  5DJO A;  1LGP A;  4A4Y A;  1YJ5 C;  1DD1 A;  5EJG A;  3V80 A;  2FF4 A;  3I0N A;  2AFF A;  3V7W A;  2JPE A;  3V8N A;  4A0E A;  3OUN A;  3V8P A;  2EH0 A;  2FEZ A;  2JQI A;  3HUF A;  1U7F A;  3ELS A;  1U7V B;  3UMZ A;  1FHQ A;  4V24 A;  2G1L A;  1J4O A;  2I2F A;  1K3Q A;  3UOT A;  3VZD A;  1MZK A;  1ZOQ A;  1WV3 A;  3UV0 A;  1K2M A;  3MDB A;  5JEO A;  1G3G A;  2Q5F A;  3I6W A;  1FHR A;  3GQS A;  1Y3I A;  3FM8 A;  3PO8 A;  3VZB A;  4WRR A;  2QVL A;  3V8Q A;  2I29 A;  3V8R A;  2I2A A;  2I2C A;  3I0M A;  4JON A;  2KB3 A;  3ELV A;  1J2F A;  1U7F B;  2LC1 A;  3VPY A;  5EJF A;  1DMZ A;  2XXS A;  1SUW A;  5DHU A;  1YGS A;  4EJQ A;  3KT9 A;  3PFN A;  5EJI A;  3DIT A;  3V7Y A;  2JGR A;  5JEL A;  5BVI A;  4HAO A; 
#chains in the Genus database with same CATH homology
 2I2B A;  5DHT A;  2I2D A;  5DHQ A;  1Z0Z A;  1YT5 A;  1U0T A;  2Q5F A;  1Y3I A;  3V8Q A;  5EJG A;  3V8R A;  2I29 A;  3V80 A;  1Y3H A;  1Z0U A;  2I2A A;  1U0R A;  3V8M A;  3V7W A;  2I2C A;  5DHP A;  3V8N A;  5DHR A;  4DY6 A;  3V8P A;  2AN1 A;  5EJH A;  5EJF A;  3AFO A;  1SUW A;  5DHU A;  1Z0S A;  2I1W A;  3V7U A;  5DHS A;  3PFN A;  5EJI A;  3V7Y A;  4HAO A;  2I2F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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