5EKWA

A. thaliana igpd2 in complex with the racemate of the triazole-phosphonate inhibitor, c348
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
194
structure length
194
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 61
structure length 194
sequence length 194
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA02
5EL9A 4MU4A 4QNKA 2AE8A 4LPFA 2F1DA 5ELWA 4QNJA 4GQUA 4MU0A 5DNXA 5EKWA 4MU3A 4LOMA 1RHYA 4MU1A 5DNLA
chains in the Genus database with same CATH superfamily
1R6LA 1H7SA 2UXBE 3M7NG 4PRVA 2E5LE 4ED4A 2PNMA 1J5EE 3PRYA 1KIJA 3M7ND 4USKA 2WP8A 2J65A 1Z5BA 4BA1B 2JT2A 4DV4E 4JI6E 2PO2B 3M85D 1U2RA 4HACA 4JI7E 2VQFI 5IT9C 4DV5E 2UXDI 1HR0E 1FJGI 4JV5I 4XTJA 5C0XE 1Y60A 4DV5I 2Z5BB 1Y4SA 5A2QQ 1KVKA 4JV5E 2O1UA 4OO1F 4OO1A 3JAMQ 1IBLE 3GCMA 1OJ4A 1NZ0A 1NHIA 4X62E 1YH8A 3CDJA 4JI8I 2ZM6E 3KRNA 4X62I 2Z5EA 1NHHA 2UUAE 2V34A 2ZM6I 1IBKI 4JI2I 1YHCA 1HNZI 4B3TE 4WUBA 4GKKE 4DR1I 2AE8A 4P52A 4DV6I 1NHJA 3UHMA 2UUBI 4DR2E 1N32I 1Y5YA 4X65I 4OO1E 4USMA 4DV6E 4IFDC 4X65E 1Z0VA 5C0XC 2XEXA 3LPSA 3QT7A 4JI2E 3OTOI 4X64I 1N34E 4JI4I 4J3DA 1XNRI 4FW4A 4B3TI 2O1TA 4JI0I 4DR5E 1Z5CA 1I94I 3B4TA 5BR8E 4DU7A 2Z5CA 2UUAI 1H74A 5FLXQ 5DNXA 5K36A 1MG7A 4LF7E 3PS3A 4DU8A 1BKNA 2A2DA 4HY1A 4M1KA 1K47A 1VI7A 2HFUA 4DV0I 2C39A 3P3EA 4LF5E 2Z5BA 1MX0A 1A6FA 1UDNA 5JEAC 2O3ZA 4MU1A 3J7AM 1XMQE 4LFAI 2NN6D 4N3OA 3HULA 3PYDA 5JEAD 2BV3A 3HKMA 2PNZB 4LF8I 4AQYI 4FW7A 3P76A 4FN5A 1XXEA 2NN6C 4PU9A 3F0NA 2NN6E 4EMDA 5IWAE 2DEIA 1ELOA 4PRXA 3V2UC 4HACB 1XNQE 1KTVA 4DR6I 2IOPA 2VESA 1HNWE 2HKJA 1H72C 3B82A 2PO1A 4DV2E 5DRPA 4LF9I 1Z0CA 2GO4A 2X7IA 1RHYA 2HKEA 4DV1E 1HNXI 4R1FA 2HK3A 2HK2A 3H1CA 4DPTA 5C0XD 2ZITA 4X66I 4LFBI 4Z7YA 4JI1I 3ZZ0A 2UXCI 2IERA 4LFCE 4LF6E 4DR4E 2JE6A 2BR2A 3Q6NA 3LNUA 4NXNI 3T1HE 4JI5E 1ZXMA 2JEAB 4ZVIA 1P42A 1ZM3A 3B8HA 1IBKE 1FNMA 1S4EA 2CZ9A 2UU9I 2PO1B 4JI5I 1IBME 1Z5AA 5DNLA 4JI8E 1PKPA 5K36E 4AIMA 1EA6A 4DR5I 4GKJI 4LF4I 4I3HA 2NN6F 1E3HA 2AJ4A 1FWKA 3J80Q 2C39B 5DROA 4DV7I 2V2ZA 3ZZTA 2HHHE 4DV0E 3T1HI 2BR2B 4NXNE 1RREA 2C37B 4FW9A 4MU3A 1USUA 1ZM2A 4WUDA 4DPUA 2HFSA 3ZZUA 3PYFA 3PS1A 4DXLA 4FW5A 4DR7I 2BA0D 2IESA 1FKAE 4X66E 1Z0EA 4UT4A 5GMDA 4GQUA 4IZJB 2V8PA 3QT8A 1XNRE 1HNXE 4X64E 4JI4E 3WU5A 4YY3I 5K36C 4P7AA 4JYAE 4DV3E 4NXMI 4MQYA 4FW6A 2NN6B 1S16A 5LMNI 4BA2B 3PYEA 4MDTA 4B3RI 2JE6B 4KHPE 4OKGA 2R42A 2GQ0A 1HNWI 4KHPI 4LF5I 3U1YA 2O1WA 4DUYE 3ZKBA 1XNQI 4YHHE 4NXME 4FWGA 2CG9A 1B63A 4DPXA 4YY3E 4IZJA 1VISA 5GMEA 5IT9Q 5LMUE 2F4VI 2UXBI 3V5RA 1IBLI 1PVGA 3U1KA 5DRRA 2UUCI 3Q6MA 4DV1I 5EL9A 2ZBKB 3WU4A 3K85A 4BA1A 4BA2A 4KQVA 4LCFA 2BA0G 5L3JA 2C37A 4ISAA 4K0KI 2VQEE 4OO1C 2JEAA 3WU3A 5JEAB 1HR0I 5ELWA 4DR1E 2VQFE 2O1VA 2WW4A 1N32E 3CDIA 5C0XA 4DR2I 4DPYA 5C0XF 5LMNE 2GO3A 1PIEA 5FWKA 2Z5CB 4GKKI 4NBQA 3B78A 3ZKDA 4QNKA 3J80C 1H73A 1FI4A 2VF3A 2C38A 4LCGA 4DR7E 1KKHA 1XMOE 2A2CA 1FWLA 5JEAE 1R6MA 3J81C 1OYPA 1Z0BA 4B3ME 3Q1QA 4IFDA 2VQEI 2BA1D 1XMQI 4LFAE 2EFGA 3JAMC 5JEAF 3PS2A 1FJGE 2CGEA 4OX9E 2BM1A 5FLXC 3H4LA 4LPFA 4UTGA 4AIDA 2V2VA 2UUCE 4DV3I 1UDOA 4DV7E 1DARA 4LOMA 1Y4UA 5C0XB 4MYTA 2JEBB 2F4VE 2LJPA 1J5EI 4HXZA 1ZM9A 4GKJE 1OYSA 2WNRB 3D4JA 4LF7I 5EKWA 2NN6A 4FW3A 4DUYI 4DV2I 4IFDF 1I94E 1B62A 4OO1D 4YHHI 4DPWA 4DUZE 2OI2A 5JEAA 2HHHI 3P3GA 4OZEA 4JI3E 3K17A 1Z0WA 2X36A 1ZM4A 4IZKA 4B3RE 4DV4I 1USVA 4JI6I 2UUBE 1HK7A 2UXCE 2CVEA 2GS8A 2PNZA 4RPFA 4IFDD 2E5LI 4LF4E 2PNLA 3NZKA 1QZRA 3PYGA 4URLA 4DR3E 5LMUI 2WNRA 2DEJA 3P3CA 2WP8B 4OX9I 1N36I 4IFDB 3T1YE 4B3SI 2R3VA 4MYUA 1E3PA 3DD6A 3LTOA 1UDSA 4IFDE 4Z7CA 4FWDA 4IZJD 3P06A 3ZM7A 1RR9A 1XMOI 4U3DA 4FWHA 4U3BA 2E1RA 4DR3I 4IZKB 1OYRA 4LFCI 1N0UA 1D6TA 4MU4A 4IS9A 2F1DA 2J7KA 4JI7I 5K36B 1ZXNA 4MU0A 3K1JA 4AQYE 1EI1A 3HJCA 4JI0E 4JYAI 3J81Q 2C38B 5LL6R 4LF9E 5DRQA 4QNJA 3L7ZA 3QT6A 1N33E 4LF8E 2UU9E 2PO2A 4K0KE 2PO0A 1IBMI 4HYMA 3M85G 3CWVA 4DR6E 4DR4I 2IOQA 4AM3A 3QT5A 3J7AG 1WUUA 4JI1E 1UDQA 5A2QC 4LFBE 2Q2EB 4LF6I 1N33I 2BA1G 1N36E 2V2QA 2JEBA 3GONA 4JG4A 5BR8I 5K36F 1UEKA 4WUCA 1N34I 1N0VC 3L7ZB 2NPFA 3OTOE 3M6AA 2PO0B 4B3MI 5K36D 2UXDE 1MU5A 1H7UA 4DUZI 3WU6A 1Z59A 1XHKA 4JI3I 4OO1B 3T1YI 4B3SE 5IWAI 1Z0TA 3GMEA 3GLLA 2BM0A 1Z0GA 1Y6ZA 1HNZE 4LCHA
chains in the Genus database with same CATH topology
5EL9A 4MU4A 4QNKA 2AE8A 4LPFA 2F1DA 5ELWA 4QNJA 4GQUA 4MU0A 5DNXA 5EKWA 4MU3A 4LOMA 1RHYA 4MU1A 5DNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EL9 A;  4MU4 A;  4QNK A;  2AE8 A;  4LPF A;  2F1D A;  5ELW A;  4QNJ A;  4GQU A;  4MU0 A;  5DNX A;  5EKW A;  4MU3 A;  4LOM A;  1RHY A;  4MU1 A;  5DNL A; 
#chains in the Genus database with same CATH topology
 1R6L A;  1H7S A;  2UXB E;  3M7N G;  4PRV A;  2E5L E;  4ED4 A;  2PNM A;  1J5E E;  3PRY A;  1KIJ A;  3M7N D;  4USK A;  2WP8 A;  2J65 A;  1Z5B A;  4BA1 B;  2JT2 A;  4DV4 E;  4JI6 E;  2PO2 B;  3M85 D;  1U2R A;  4HAC A;  4JI7 E;  2VQF I;  5IT9 C;  4DV5 E;  2UXD I;  1HR0 E;  1FJG I;  4JV5 I;  4XTJ A;  5C0X E;  1Y60 A;  4DV5 I;  2Z5B B;  1Y4S A;  5A2Q Q;  1KVK A;  4JV5 E;  2O1U A;  4OO1 F;  4OO1 A;  3JAM Q;  1IBL E;  3GCM A;  1OJ4 A;  1NZ0 A;  1NHI A;  4X62 E;  1YH8 A;  3CDJ A;  4JI8 I;  2ZM6 E;  3KRN A;  4X62 I;  2Z5E A;  1NHH A;  2UUA E;  2V34 A;  2ZM6 I;  1IBK I;  4JI2 I;  1YHC A;  1HNZ I;  4B3T E;  4WUB A;  4GKK E;  4DR1 I;  2AE8 A;  4P52 A;  4DV6 I;  1NHJ A;  3UHM A;  2UUB I;  4DR2 E;  1N32 I;  1Y5Y A;  4X65 I;  4OO1 E;  4USM A;  4DV6 E;  4IFD C;  4X65 E;  1Z0V A;  5C0X C;  2XEX A;  3LPS A;  3QT7 A;  4JI2 E;  3OTO I;  4X64 I;  1N34 E;  4JI4 I;  4J3D A;  1XNR I;  4FW4 A;  4B3T I;  2O1T A;  4JI0 I;  4DR5 E;  1Z5C A;  1I94 I;  3B4T A;  5BR8 E;  4DU7 A;  2Z5C A;  2UUA I;  1H74 A;  5FLX Q;  5DNX A;  5K36 A;  1MG7 A;  4LF7 E;  3PS3 A;  4DU8 A;  1BKN A;  2A2D A;  4HY1 A;  4M1K A;  1K47 A;  1VI7 A;  2HFU A;  4DV0 I;  2C39 A;  3P3E A;  4LF5 E;  2Z5B A;  1MX0 A;  1A6F A;  1UDN A;  5JEA C;  2O3Z A;  4MU1 A;  3J7A M;  1XMQ E;  4LFA I;  2NN6 D;  4N3O A;  3HUL A;  3PYD A;  5JEA D;  2BV3 A;  3HKM A;  2PNZ B;  4LF8 I;  4AQY I;  4FW7 A;  3P76 A;  4FN5 A;  1XXE A;  2NN6 C;  4PU9 A;  3F0N A;  2NN6 E;  4EMD A;  5IWA E;  2DEI A;  1ELO A;  4PRX A;  3V2U C;  4HAC B;  1XNQ E;  1KTV A;  4DR6 I;  2IOP A;  2VES A;  1HNW E;  2HKJ A;  1H72 C;  3B82 A;  2PO1 A;  4DV2 E;  5DRP A;  4LF9 I;  1Z0C A;  2GO4 A;  2X7I A;  1RHY A;  2HKE A;  4DV1 E;  1HNX I;  4R1F A;  2HK3 A;  2HK2 A;  3H1C A;  4DPT A;  5C0X D;  2ZIT A;  4X66 I;  4LFB I;  4Z7Y A;  4JI1 I;  3ZZ0 A;  2UXC I;  2IER A;  4LFC E;  4LF6 E;  4DR4 E;  2JE6 A;  2BR2 A;  3Q6N A;  3LNU A;  4NXN I;  3T1H E;  4JI5 E;  1ZXM A;  2JEA B;  4ZVI A;  1P42 A;  1ZM3 A;  3B8H A;  1IBK E;  1FNM A;  1S4E A;  2CZ9 A;  2UU9 I;  2PO1 B;  4JI5 I;  1IBM E;  1Z5A A;  5DNL A;  4JI8 E;  1PKP A;  5K36 E;  4AIM A;  1EA6 A;  4DR5 I;  4GKJ I;  4LF4 I;  4I3H A;  2NN6 F;  1E3H A;  2AJ4 A;  1FWK A;  3J80 Q;  2C39 B;  5DRO A;  4DV7 I;  2V2Z A;  3ZZT A;  2HHH E;  4DV0 E;  3T1H I;  2BR2 B;  4NXN E;  1RRE A;  2C37 B;  4FW9 A;  4MU3 A;  1USU A;  1ZM2 A;  4WUD A;  4DPU A;  2HFS A;  3ZZU A;  3PYF A;  3PS1 A;  4DXL A;  4FW5 A;  4DR7 I;  2BA0 D;  2IES A;  1FKA E;  4X66 E;  1Z0E A;  4UT4 A;  5GMD A;  4GQU A;  4IZJ B;  2V8P A;  3QT8 A;  1XNR E;  1HNX E;  4X64 E;  4JI4 E;  3WU5 A;  4YY3 I;  5K36 C;  4P7A A;  4JYA E;  4DV3 E;  4NXM I;  4MQY A;  4FW6 A;  2NN6 B;  1S16 A;  5LMN I;  4BA2 B;  3PYE A;  4MDT A;  4B3R I;  2JE6 B;  4KHP E;  4OKG A;  2R42 A;  2GQ0 A;  1HNW I;  4KHP I;  4LF5 I;  3U1Y A;  2O1W A;  4DUY E;  3ZKB A;  1XNQ I;  4YHH E;  4NXM E;  4FWG A;  2CG9 A;  1B63 A;  4DPX A;  4YY3 E;  4IZJ A;  1VIS A;  5GME A;  5IT9 Q;  5LMU E;  2F4V I;  2UXB I;  3V5R A;  1IBL I;  1PVG A;  3U1K A;  5DRR A;  2UUC I;  3Q6M A;  4DV1 I;  5EL9 A;  2ZBK B;  3WU4 A;  3K85 A;  4BA1 A;  4BA2 A;  4KQV A;  4LCF A;  2BA0 G;  5L3J A;  2C37 A;  4ISA A;  4K0K I;  2VQE E;  4OO1 C;  2JEA A;  3WU3 A;  5JEA B;  1HR0 I;  5ELW A;  4DR1 E;  2VQF E;  2O1V A;  2WW4 A;  1N32 E;  3CDI A;  5C0X A;  4DR2 I;  4DPY A;  5C0X F;  5LMN E;  2GO3 A;  1PIE A;  5FWK A;  2Z5C B;  4GKK I;  4NBQ A;  3B78 A;  3ZKD A;  4QNK A;  3J80 C;  1H73 A;  1FI4 A;  2VF3 A;  2C38 A;  4LCG A;  4DR7 E;  1KKH A;  1XMO E;  2A2C A;  1FWL A;  5JEA E;  1R6M A;  3J81 C;  1OYP A;  1Z0B A;  4B3M E;  3Q1Q A;  4IFD A;  2VQE I;  2BA1 D;  1XMQ I;  4LFA E;  2EFG A;  3JAM C;  5JEA F;  3PS2 A;  1FJG E;  2CGE A;  4OX9 E;  2BM1 A;  5FLX C;  3H4L A;  4LPF A;  4UTG A;  4AID A;  2V2V A;  2UUC E;  4DV3 I;  1UDO A;  4DV7 E;  1DAR A;  4LOM A;  1Y4U A;  5C0X B;  4MYT A;  2JEB B;  2F4V E;  2LJP A;  1J5E I;  4HXZ A;  1ZM9 A;  4GKJ E;  1OYS A;  2WNR B;  3D4J A;  4LF7 I;  5EKW A;  2NN6 A;  4FW3 A;  4DUY I;  4DV2 I;  4IFD F;  1I94 E;  1B62 A;  4OO1 D;  4YHH I;  4DPW A;  4DUZ E;  2OI2 A;  5JEA A;  2HHH I;  3P3G A;  4OZE A;  4JI3 E;  3K17 A;  1Z0W A;  2X36 A;  1ZM4 A;  4IZK A;  4B3R E;  4DV4 I;  1USV A;  4JI6 I;  2UUB E;  1HK7 A;  2UXC E;  2CVE A;  2GS8 A;  2PNZ A;  4RPF A;  4IFD D;  2E5L I;  4LF4 E;  2PNL A;  3NZK A;  1QZR A;  3PYG A;  4URL A;  4DR3 E;  5LMU I;  2WNR A;  2DEJ A;  3P3C A;  2WP8 B;  4OX9 I;  1N36 I;  4IFD B;  3T1Y E;  4B3S I;  2R3V A;  4MYU A;  1E3P A;  3DD6 A;  3LTO A;  1UDS A;  4IFD E;  4Z7C A;  4FWD A;  4IZJ D;  3P06 A;  3ZM7 A;  1RR9 A;  1XMO I;  4U3D A;  4FWH A;  4U3B A;  2E1R A;  4DR3 I;  4IZK B;  1OYR A;  4LFC I;  1N0U A;  1D6T A;  4MU4 A;  4IS9 A;  2F1D A;  2J7K A;  4JI7 I;  5K36 B;  1ZXN A;  4MU0 A;  3K1J A;  4AQY E;  1EI1 A;  3HJC A;  4JI0 E;  4JYA I;  3J81 Q;  2C38 B;  5LL6 R;  4LF9 E;  5DRQ A;  4QNJ A;  3L7Z A;  3QT6 A;  1N33 E;  4LF8 E;  2UU9 E;  2PO2 A;  4K0K E;  2PO0 A;  1IBM I;  4HYM A;  3M85 G;  3CWV A;  4DR6 E;  4DR4 I;  2IOQ A;  4AM3 A;  3QT5 A;  3J7A G;  1WUU A;  4JI1 E;  1UDQ A;  5A2Q C;  4LFB E;  2Q2E B;  4LF6 I;  1N33 I;  2BA1 G;  1N36 E;  2V2Q A;  2JEB A;  3GON A;  4JG4 A;  5BR8 I;  5K36 F;  1UEK A;  4WUC A;  1N34 I;  1N0V C;  3L7Z B;  2NPF A;  3OTO E;  3M6A A;  2PO0 B;  4B3M I;  5K36 D;  2UXD E;  1MU5 A;  1H7U A;  4DUZ I;  3WU6 A;  1Z59 A;  1XHK A;  4JI3 I;  4OO1 B;  3T1Y I;  4B3S E;  5IWA I;  1Z0T A;  3GME A;  3GLL A;  2BM0 A;  1Z0G A;  1Y6Z A;  1HNZ E;  4LCH A; 
#chains in the Genus database with same CATH homology
 5EL9 A;  4MU4 A;  4QNK A;  2AE8 A;  4LPF A;  2F1D A;  5ELW A;  4QNJ A;  4GQU A;  4MU0 A;  5DNX A;  5EKW A;  4MU3 A;  4LOM A;  1RHY A;  4MU1 A;  5DNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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