5EKWA

A. thaliana igpd2 in complex with the racemate of the triazole-phosphonate inhibitor, c348
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
194
structure length
194
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
total genus 61
structure length 194
sequence length 194
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA02
5DNXA 2F1DA 2AE8A 4QNJA 5DNLA 5ELWA 5EKWA 4MU0A 4GQUA 4LPFA 4MU3A 5EL9A 4MU1A 4LOMA 4QNKA 4MU4A 1RHYA
chains in the Genus database with same CATH superfamily
4WUBA 1RREA 3GMEA 2UXBE 1H7UA 5C0XE 4IZKB 5DRPA 3T1HE 1VI7A 1HNXE 5DNLA 2A2CA 3H1CA 1IBLE 1Z0VA 2Z5BB 2HHHI 4JI3I 4LF7I 2VF3A 1N0UA 3NZKA 4LCHA 5K36F 3M6AA 2F4VI 2UUAI 4IFDC 5ELWA 1NHJA 4YHHE 3B4TA 4MU4A 1R6MA 3OTOE 4DV0E 4UT4A 3M85G 3Q6NA 1B62A 4DU7A 4USMA 2HKEA 3F0NA 5DROA 5DNXA 3V2UC 2LJPA 5A2QC 3DD6A 5C0XF 2PO0B 4DUYE 4ZVIA 4OX9E 2BA1G 1ELOA 4DV4E 3ZKBA 3V5RA 5L3JA 4B3SE 1OYSA 2HFUA 3PS3A 4AIMA 1D6TA 4LF4E 4DPXA 1UDQA 2Z5CB 3GONA 4FW6A 4GKKE 2E5LI 1H73A 5A2QQ 2JEAA 2JT2A 4DR6I 4IFDB 5C0XB 1H74A 4DR4E 1E3HA 1UEKA 2BR2B 3D4JA 2PNMA 2UXCI 3HKMA 4JI7I 2V2QA 4MYTA 1N0VC 4OKGA 1MG7A 1XNRE 4DR1E 4DV0I 4LF5I 5JEAD 1HR0I 2UXBI 2UU9E 4JYAI 5FWKA 4DPWA 3CDIA 1N32I 4DV4I 4MDTA 4DUYI 4K0KE 4RPFA 4JI0E 1Z0TA 2PO1A 3PYFA 4DUZI 2IESA 3JAMQ 4YHHI 4YY3I 1H7SA 4NBQA 1N36I 5IT9Q 1Y60A 5JEAA 4IFDD 4LCFA 2UXDE 5BR8I 3B82A 1OJ4A 5GMDA 1B63A 4JI4E 4B3SI 2UXCE 2IERA 3T1YE 1FWKA 4LF4I 4AQYE 2HK3A 2ZITA 4QNKA 3L7ZB 4IZKA 1RHYA 1VISA 1Z0WA 4DR6E 5LMUE 1HNZI 4IZJB 1PKPA 1HNWE 3WU4A 1S16A 2UU9I 2Z5BA 2PO2A 4JV5E 2EFGA 4JI0I 2ZBKB 1ZXMA 2NN6C 4B3TI 2HK2A 3CDJA 4DV6I 1XNQE 4MU1A 4DXLA 1P42A 2AJ4A 1Y4UA 4K0KI 1I94E 4FWHA 3PYEA 4JI5E 2O1UA 3LNUA 3B8HA 4BA1A 4R1FA 2BM0A 4UTGA 4N3OA 3K1JA 2R3VA 4JYAE 1OYPA 5FLXQ 1A6FA 3J81C 1XNRI 2UXDI 2UUCE 1KKHA 5DRQA 5LMNE 4Z7YA 1N36E 4DV2I 2JEAB 1USUA 2F1DA 4JI6I 2NN6B 4X62I 2HHHE 4JI3E 4OO1D 3ZKDA 4LF7E 4M1KA 1N33I 2C37B 3KRNA 4DPTA 1J5EI 1HNWI 3QT5A 2J65A 4MYUA 3Q6MA 4JV5I 4IFDF 2BA0G 1UDNA 4DR2I 3QT7A 4OO1C 5IT9C 1USVA 5K36C 1H72C 1U2RA 5EKWA 4JI4I 4LFAI 2VQEI 3T1HI 4IFDA 3P06A 3HJCA 1YHCA 5K36B 5EL9A 2NPFA 4PRXA 2XEXA 5LMNI 4X65E 3U1YA 5DRRA 2JEBB 2UUAE 1XXEA 4MQYA 2WP8A 1XMQI 4LF6E 4OO1A 2UUCI 4DV3I 2JE6A 2O3ZA 3OTOI 5JEAE 1I94I 3M85D 1UDSA 1OYRA 4DR7E 1XMOE 1ZM2A 1ZM9A 2OI2A 2WP8B 2V2VA 4IZJA 1ZXNA 2GQ0A 3B78A 4URLA 4X62E 3ZZUA 2PO0A 4DR1I 4NXNI 4X65I 4X66E 2HFSA 4X64I 1FI4A 1Z5AA 3GLLA 3WU3A 5K36D 3J81Q 4LF9E 3Q1QA 4FWDA 3J7AG 4ISAA 1XMQE 1IBKI 1NHHA 1Y4SA 5LL6R 2VQFE 1IBME 3PYDA 4NXME 1Y5YA 2Z5CA 2UUBE 4I3HA 2GO4A 1S4EA 1KIJA 4J3DA 3QT8A 3U1KA 2VQEE 2NN6F 3CWVA 4LFBE 2A2DA 4FW5A 1FJGE 3PYGA 4DUZE 2V2ZA 1Z59A 2IOPA 4OO1F 4DU8A 4FW9A 1BKNA 1ZM4A 1RR9A 2ZM6I 4DPUA 4X64E 3PS2A 2O1WA 1N34I 2BA1D 4DPYA 4B3MI 1EI1A 4NXNE 4DR7I 4X66I 3GCMA 3T1YI 4DV1I 3ZZTA 1E3PA 2F4VE 5C0XA 4JI1E 1XHKA 2WNRA 5BR8E 1HK7A 2AE8A 1XMOI 3J7AM 2PNLA 1Z0EA 4FW4A 2JEBA 4JI2I 4OO1B 2HKJA 4U3BA 4LF8E 4DR5I 1UDOA 3P3EA 4DR3I 4DV6E 1R6LA 1DARA 3M7NG 2DEIA 4LOMA 3UHMA 1NHIA 5LMUI 2J7KA 1HNZE 2NN6E 5IWAI 4JI5I 1Z5CA 4OX9I 4JI8I 1Z0CA 4AQYI 2Z5EA 4BA2A 4HACB 3QT6A 2CZ9A 4P52A 2C39B 3L7ZA 3J80C 4JG4A 4U3DA 2PO1B 2NN6D 2O1VA 4LFBI 4ED4A 2NN6A 4B3TE 1N34E 2CG9A 2E5LE 4IS9A 3K17A 3LPSA 4FW3A 4JI2E 1Z5BA 4JI7E 5K36E 3P3CA 4MU0A 1Y6ZA 1YH8A 4DR5E 4DR3E 5K36A 4WUCA 1NZ0A 1N33E 4LF5E 1FKAE 4JI6E 4LF8I 4HY1A 3JAMC 4DV7E 4DV1E 3M7ND 4JI8E 4JI1I 4IFDE 1N32E 4OZEA 4HXZA 4PRVA 2BR2A 2BV3A 5JEAF 3J80Q 4KHPI 1KTVA 4PU9A 2C38B 4DR2E 4AM3A 4Z7CA 2C39A 1MU5A 1KVKA 1FNMA 1QZRA 2X7IA 3PS1A 2V8PA 1MX0A 4XTJA 5IWAE 3ZZ0A 4GKJI 2WW4A 5JEAB 5JEAC 4HYMA 4OO1E 2GO3A 2PNZB 4YY3E 1HR0E 2C38A 4FN5A 1EA6A 4LCGA 4QNJA 4EMDA 1PIEA 4MU3A 4LF6I 3LTOA 1WUUA 3P76A 4AIDA 1PVGA 4DV3E 2IOQA 2CGEA 4LFCI 2X36A 2PO2B 3WU5A 2PNZA 1IBMI 1ZM3A 2GS8A 4LF9I 2C37A 4GQUA 5FLXC 4B3RI 4DV5I 2DEJA 2O1TA 5C0XC 2BA0D 4HACA 3K85A 2V34A 3P3GA 4NXMI 1FJGI 4DV7I 3HULA 3H4LA 4KQVA 1XNQI 1IBLI 4P7AA 5GMEA 1IBKE 4FW7A 2R42A 1HNXI 2E1RA 4IZJD 4USKA 2CVEA 2JE6B 4KHPE 2BM1A 3ZM7A 1Z0GA 4WUDA 2VESA 5C0XD 2ZM6E 4BA2B 2VQFI 1FWLA 3PRYA 4LPFA 4GKJE 2Q2EB 2UUBI 4B3ME 4B3RE 4DV5E 4FWGA 1J5EE 4LFCE 4DR4I 4DV2E 1K47A 4LFAE 4BA1B 1Z0BA 4GKKI 2WNRB 3WU6A
chains in the Genus database with same CATH topology
5DNXA 2F1DA 2AE8A 4QNJA 5DNLA 5ELWA 5EKWA 4MU0A 4GQUA 4LPFA 4MU3A 5EL9A 4MU1A 4LOMA 4QNKA 4MU4A 1RHYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DNX A;  2F1D A;  2AE8 A;  4QNJ A;  5DNL A;  5ELW A;  5EKW A;  4MU0 A;  4GQU A;  4LPF A;  4MU3 A;  5EL9 A;  4MU1 A;  4LOM A;  4QNK A;  4MU4 A;  1RHY A; 
#chains in the Genus database with same CATH topology
 4WUB A;  1RRE A;  3GME A;  2UXB E;  1H7U A;  5C0X E;  4IZK B;  5DRP A;  3T1H E;  1VI7 A;  1HNX E;  5DNL A;  2A2C A;  3H1C A;  1IBL E;  1Z0V A;  2Z5B B;  2HHH I;  4JI3 I;  4LF7 I;  2VF3 A;  1N0U A;  3NZK A;  4LCH A;  5K36 F;  3M6A A;  2F4V I;  2UUA I;  4IFD C;  5ELW A;  1NHJ A;  4YHH E;  3B4T A;  4MU4 A;  1R6M A;  3OTO E;  4DV0 E;  4UT4 A;  3M85 G;  3Q6N A;  1B62 A;  4DU7 A;  4USM A;  2HKE A;  3F0N A;  5DRO A;  5DNX A;  3V2U C;  2LJP A;  5A2Q C;  3DD6 A;  5C0X F;  2PO0 B;  4DUY E;  4ZVI A;  4OX9 E;  2BA1 G;  1ELO A;  4DV4 E;  3ZKB A;  3V5R A;  5L3J A;  4B3S E;  1OYS A;  2HFU A;  3PS3 A;  4AIM A;  1D6T A;  4LF4 E;  4DPX A;  1UDQ A;  2Z5C B;  3GON A;  4FW6 A;  4GKK E;  2E5L I;  1H73 A;  5A2Q Q;  2JEA A;  2JT2 A;  4DR6 I;  4IFD B;  5C0X B;  1H74 A;  4DR4 E;  1E3H A;  1UEK A;  2BR2 B;  3D4J A;  2PNM A;  2UXC I;  3HKM A;  4JI7 I;  2V2Q A;  4MYT A;  1N0V C;  4OKG A;  1MG7 A;  1XNR E;  4DR1 E;  4DV0 I;  4LF5 I;  5JEA D;  1HR0 I;  2UXB I;  2UU9 E;  4JYA I;  5FWK A;  4DPW A;  3CDI A;  1N32 I;  4DV4 I;  4MDT A;  4DUY I;  4K0K E;  4RPF A;  4JI0 E;  1Z0T A;  2PO1 A;  3PYF A;  4DUZ I;  2IES A;  3JAM Q;  4YHH I;  4YY3 I;  1H7S A;  4NBQ A;  1N36 I;  5IT9 Q;  1Y60 A;  5JEA A;  4IFD D;  4LCF A;  2UXD E;  5BR8 I;  3B82 A;  1OJ4 A;  5GMD A;  1B63 A;  4JI4 E;  4B3S I;  2UXC E;  2IER A;  3T1Y E;  1FWK A;  4LF4 I;  4AQY E;  2HK3 A;  2ZIT A;  4QNK A;  3L7Z B;  4IZK A;  1RHY A;  1VIS A;  1Z0W A;  4DR6 E;  5LMU E;  1HNZ I;  4IZJ B;  1PKP A;  1HNW E;  3WU4 A;  1S16 A;  2UU9 I;  2Z5B A;  2PO2 A;  4JV5 E;  2EFG A;  4JI0 I;  2ZBK B;  1ZXM A;  2NN6 C;  4B3T I;  2HK2 A;  3CDJ A;  4DV6 I;  1XNQ E;  4MU1 A;  4DXL A;  1P42 A;  2AJ4 A;  1Y4U A;  4K0K I;  1I94 E;  4FWH A;  3PYE A;  4JI5 E;  2O1U A;  3LNU A;  3B8H A;  4BA1 A;  4R1F A;  2BM0 A;  4UTG A;  4N3O A;  3K1J A;  2R3V A;  4JYA E;  1OYP A;  5FLX Q;  1A6F A;  3J81 C;  1XNR I;  2UXD I;  2UUC E;  1KKH A;  5DRQ A;  5LMN E;  4Z7Y A;  1N36 E;  4DV2 I;  2JEA B;  1USU A;  2F1D A;  4JI6 I;  2NN6 B;  4X62 I;  2HHH E;  4JI3 E;  4OO1 D;  3ZKD A;  4LF7 E;  4M1K A;  1N33 I;  2C37 B;  3KRN A;  4DPT A;  1J5E I;  1HNW I;  3QT5 A;  2J65 A;  4MYU A;  3Q6M A;  4JV5 I;  4IFD F;  2BA0 G;  1UDN A;  4DR2 I;  3QT7 A;  4OO1 C;  5IT9 C;  1USV A;  5K36 C;  1H72 C;  1U2R A;  5EKW A;  4JI4 I;  4LFA I;  2VQE I;  3T1H I;  4IFD A;  3P06 A;  3HJC A;  1YHC A;  5K36 B;  5EL9 A;  2NPF A;  4PRX A;  2XEX A;  5LMN I;  4X65 E;  3U1Y A;  5DRR A;  2JEB B;  2UUA E;  1XXE A;  4MQY A;  2WP8 A;  1XMQ I;  4LF6 E;  4OO1 A;  2UUC I;  4DV3 I;  2JE6 A;  2O3Z A;  3OTO I;  5JEA E;  1I94 I;  3M85 D;  1UDS A;  1OYR A;  4DR7 E;  1XMO E;  1ZM2 A;  1ZM9 A;  2OI2 A;  2WP8 B;  2V2V A;  4IZJ A;  1ZXN A;  2GQ0 A;  3B78 A;  4URL A;  4X62 E;  3ZZU A;  2PO0 A;  4DR1 I;  4NXN I;  4X65 I;  4X66 E;  2HFS A;  4X64 I;  1FI4 A;  1Z5A A;  3GLL A;  3WU3 A;  5K36 D;  3J81 Q;  4LF9 E;  3Q1Q A;  4FWD A;  3J7A G;  4ISA A;  1XMQ E;  1IBK I;  1NHH A;  1Y4S A;  5LL6 R;  2VQF E;  1IBM E;  3PYD A;  4NXM E;  1Y5Y A;  2Z5C A;  2UUB E;  4I3H A;  2GO4 A;  1S4E A;  1KIJ A;  4J3D A;  3QT8 A;  3U1K A;  2VQE E;  2NN6 F;  3CWV A;  4LFB E;  2A2D A;  4FW5 A;  1FJG E;  3PYG A;  4DUZ E;  2V2Z A;  1Z59 A;  2IOP A;  4OO1 F;  4DU8 A;  4FW9 A;  1BKN A;  1ZM4 A;  1RR9 A;  2ZM6 I;  4DPU A;  4X64 E;  3PS2 A;  2O1W A;  1N34 I;  2BA1 D;  4DPY A;  4B3M I;  1EI1 A;  4NXN E;  4DR7 I;  4X66 I;  3GCM A;  3T1Y I;  4DV1 I;  3ZZT A;  1E3P A;  2F4V E;  5C0X A;  4JI1 E;  1XHK A;  2WNR A;  5BR8 E;  1HK7 A;  2AE8 A;  1XMO I;  3J7A M;  2PNL A;  1Z0E A;  4FW4 A;  2JEB A;  4JI2 I;  4OO1 B;  2HKJ A;  4U3B A;  4LF8 E;  4DR5 I;  1UDO A;  3P3E A;  4DR3 I;  4DV6 E;  1R6L A;  1DAR A;  3M7N G;  2DEI A;  4LOM A;  3UHM A;  1NHI A;  5LMU I;  2J7K A;  1HNZ E;  2NN6 E;  5IWA I;  4JI5 I;  1Z5C A;  4OX9 I;  4JI8 I;  1Z0C A;  4AQY I;  2Z5E A;  4BA2 A;  4HAC B;  3QT6 A;  2CZ9 A;  4P52 A;  2C39 B;  3L7Z A;  3J80 C;  4JG4 A;  4U3D A;  2PO1 B;  2NN6 D;  2O1V A;  4LFB I;  4ED4 A;  2NN6 A;  4B3T E;  1N34 E;  2CG9 A;  2E5L E;  4IS9 A;  3K17 A;  3LPS A;  4FW3 A;  4JI2 E;  1Z5B A;  4JI7 E;  5K36 E;  3P3C A;  4MU0 A;  1Y6Z A;  1YH8 A;  4DR5 E;  4DR3 E;  5K36 A;  4WUC A;  1NZ0 A;  1N33 E;  4LF5 E;  1FKA E;  4JI6 E;  4LF8 I;  4HY1 A;  3JAM C;  4DV7 E;  4DV1 E;  3M7N D;  4JI8 E;  4JI1 I;  4IFD E;  1N32 E;  4OZE A;  4HXZ A;  4PRV A;  2BR2 A;  2BV3 A;  5JEA F;  3J80 Q;  4KHP I;  1KTV A;  4PU9 A;  2C38 B;  4DR2 E;  4AM3 A;  4Z7C A;  2C39 A;  1MU5 A;  1KVK A;  1FNM A;  1QZR A;  2X7I A;  3PS1 A;  2V8P A;  1MX0 A;  4XTJ A;  5IWA E;  3ZZ0 A;  4GKJ I;  2WW4 A;  5JEA B;  5JEA C;  4HYM A;  4OO1 E;  2GO3 A;  2PNZ B;  4YY3 E;  1HR0 E;  2C38 A;  4FN5 A;  1EA6 A;  4LCG A;  4QNJ A;  4EMD A;  1PIE A;  4MU3 A;  4LF6 I;  3LTO A;  1WUU A;  3P76 A;  4AID A;  1PVG A;  4DV3 E;  2IOQ A;  2CGE A;  4LFC I;  2X36 A;  2PO2 B;  3WU5 A;  2PNZ A;  1IBM I;  1ZM3 A;  2GS8 A;  4LF9 I;  2C37 A;  4GQU A;  5FLX C;  4B3R I;  4DV5 I;  2DEJ A;  2O1T A;  5C0X C;  2BA0 D;  4HAC A;  3K85 A;  2V34 A;  3P3G A;  4NXM I;  1FJG I;  4DV7 I;  3HUL A;  3H4L A;  4KQV A;  1XNQ I;  1IBL I;  4P7A A;  5GME A;  1IBK E;  4FW7 A;  2R42 A;  1HNX I;  2E1R A;  4IZJ D;  4USK A;  2CVE A;  2JE6 B;  4KHP E;  2BM1 A;  3ZM7 A;  1Z0G A;  4WUD A;  2VES A;  5C0X D;  2ZM6 E;  4BA2 B;  2VQF I;  1FWL A;  3PRY A;  4LPF A;  4GKJ E;  2Q2E B;  2UUB I;  4B3M E;  4B3R E;  4DV5 E;  4FWG A;  1J5E E;  4LFC E;  4DR4 I;  4DV2 E;  1K47 A;  4LFA E;  4BA1 B;  1Z0B A;  4GKK I;  2WNR B;  3WU6 A; 
#chains in the Genus database with same CATH homology
 5DNX A;  2F1D A;  2AE8 A;  4QNJ A;  5DNL A;  5ELW A;  5EKW A;  4MU0 A;  4GQU A;  4LPF A;  4MU3 A;  5EL9 A;  4MU1 A;  4LOM A;  4QNK A;  4MU4 A;  1RHY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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