5EKWA

A. thaliana igpd2 in complex with the racemate of the triazole-phosphonate inhibitor, c348
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
194
structure length
194
Chain Sequence
SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 61
structure length 194
sequence length 194
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA02
2AE8A 4QNJA 4MU1A 4LPFA 5DNXA 4QNKA 4LOMA 2F1DA 5ELWA 5EL9A 1RHYA 4MU0A 4GQUA 5DNLA 4MU4A 5EKWA 4MU3A
chains in the Genus database with same CATH superfamily
2UXDI 3K85A 2V2VA 2O1WA 2UUBI 4DR6I 3T1YI 4OX9I 4DV2I 4DUZI 2VQFE 1PKPA 1EA6A 2A2CA 4DV6E 1N36E 4USMA 3J80Q 3PS3A 3J7AG 2WW4A 4HXZA 4USKA 2GO3A 1N32I 4X64I 2UU9E 4M1KA 2PO0B 1RHYA 2R42A 4LF4I 1Z5AA 4B3MI 4LCFA 1N34I 1IBLE 3V2UC 4OO1B 4OO1F 4LF7E 1Y4UA 4FW4A 4DPTA 5DRRA 3T1HE 3B4TA 1Y5YA 3Q1QA 2CGEA 4AIDA 5JEAD 2IOQA 4B3SE 5DROA 4FWHA 3GLLA 4DXLA 2PNZA 1XNQI 5JEAA 5BR8E 2EFGA 2NN6C 2ZBKB 4FW9A 2PO1A 4OO1A 4JI3I 1J5EI 4JI4I 4MU1A 4URLA 4X65I 4UTGA 4DUZE 4YHHE 3K17A 2PNLA 1B63A 2X7IA 2C38B 1Z0CA 4LF8E 4LFBE 3CWVA 1OJ4A 2BA1G 4KHPI 4DPWA 1H72C 4LFCI 3WU3A 4MU3A 4AQYI 1N34E 4BA2A 4P52A 1IBKE 2E5LI 2UUCE 4IFDD 2UXBI 3GCMA 3WU5A 1A6FA 4FN5A 4AM3A 4Z7CA 4JV5E 4JI1E 1IBMI 4UT4A 4DV3I 1YH8A 2ZM6I 2BM1A 1XMOE 1J5EE 5EL9A 1H7UA 5FWKA 5LMNE 2UXCE 3F0NA 3M7ND 4X66E 4FW6A 1DARA 4DV1E 3ZZUA 2JEAB 1FKAE 5C0XB 5C0XF 1RREA 2Z5BA 4LF9I 3HKMA 2X36A 4YY3I 1USUA 1S16A 1K47A 1NHIA 3U1KA 1KKHA 1HNWE 4KHPE 2C39A 4JI0I 5JEAE 4B3RI 4X62I 1XMQI 2JEAA 3P76A 3ZZ0A 2E1RA 1FI4A 3PYDA 5GMEA 4DV5I 2UXBE 3QT6A 4JYAE 2NN6B 2NN6F 3B8HA 1UDNA 4DV0I 1ZM2A 1UDSA 4JI5I 5K36B 5K36F 4FW7A 5DRQA 4MDTA 1FJGE 5DNXA 1USVA 2IERA 1XNRI 4DPYA 4GKJI 3LNUA 1N33I 4BA1A 2AE8A 4Z7YA 2NN6A 1PIEA 4IZJB 4LFAI 3NZKA 2F4VI 4GQUA 2DEJA 1ZM4A 3H1CA 2O1TA 4DR2E 1HR0E 2BR2B 3M6AA 1QZRA 3WU4A 4GKKI 4IFDE 5A2QC 4DV7I 2PNMA 4DPXA 5C0XC 4LF5E 5DNLA 4HY1A 2JEBB 4MU4A 3OTOE 4NXNE 4ED4A 4DR4I 4DR1E 3QT5A 4NXME 4K0KE 4JI7I 4WUBA 2BR2A 3ZM7A 3QT7A 4LCGA 4PRVA 1E3PA 3UHMA 5A2QQ 2PO0A 2JEBA 3DD6A 3Q6MA 4NBQA 4OO1D 1I94E 1H73A 5LMUE 4AIMA 2UXDE 4GKJE 2UUBE 5K36C 2JT2A 4DR6E 3T1YE 4OX9E 3J7AM 5IT9C 3PS2A 1E3HA 4DV2E 4KQVA 1HNZI 3LPSA 4LF6I 1N0VC 1R6LA 1RR9A 2DEIA 1OYRA 1N32E 4X64E 4DUYI 4DR5I 1YHCA 1UDOA 4LF4E 4DU7A 1VISA 4B3ME 1EI1A 4DR4E 2VESA 2WP8B 3ZKDA 5IT9Q 4DV4I 5L3JA 3KRNA 2GQ0A 4FW5A 2VF3A 3PS1A 4HACB 2C38A 1KVKA 3M7NG 1H7SA 5GMDA 1H74A 2V34A 3ZKBA 1XNQE 2WP8A 4JI8I 4U3DA 4ISAA 1HNXI 4JI3E 2CG9A 3JAMC 1Z59A 4HACA 4JI4E 1UEKA 4PU9A 3M85D 1U2RA 2UUAI 4DR7I 1MG7A 4JI6I 1Z0GA 4X65E 3P3EA 2GO4A 4DR3I 3PYEA 2JE6B 2O1UA 3L7ZB 4P7AA 4LPFA 3U1YA 3QT8A 2CVEA 4LFCE 1D6TA 4OO1E 3JAMQ 5C0XA 4DPUA 4AQYE 2GS8A 2VQEI 2WNRB 1B62A 4MYUA 2JE6A 2E5LE 2VQFI 4FWGA 1Y6ZA 1N36I 3LTOA 2HK3A 2C37B 2Z5EA 2J65A 2UU9I 1FWKA 2HKEA 1IBME 4DV3E 2ZM6E 2NN6D 3HJCA 4J3DA 3V5RA 1ELOA 4RPFA 3ZZTA 1HK7A 3P3CA 1IBLI 5K36D 4IFDC 2HFUA 4WUCA 2C37A 4LF7I 5K36A 4LF9E 4YY3E 1Z5CA 2Q2EB 4B3SI 2IOPA 2F1DA 2BA0D 2IESA 5BR8I 4IZJA 4JI0E 4B3RE 4LCHA 4X62E 1XMQE 1UDQA 4DU8A 1Y60A 2BV3A 2VQEE 2BM0A 4YHHI 4DV5E 4DV0E 1OYPA 4MQYA 4JI5E 1Z5BA 4LF8I 4LFBI 4JG4A 4IS9A 4QNKA 1VI7A 5IWAI 1XNRE 1N33E 5DRPA 4U3BA 1FNMA 5FLXC 4MYTA 1NHJA 2PNZB 3P06A 2CZ9A 5JEAB 5JEAF 1IBKI 5C0XE 1Z0EA 2UUCI 4LFAE 2F4VE 2J7KA 4MU0A 2PO1B 3PRYA 1R6MA 3D4JA 4B3TI 2HK2A 2OI2A 1Z0VA 4GKKE 4JV5I 4JI1I 4DV7E 3WU6A 1NHHA 5ELWA 1XMOI 4FW3A 2NPFA 4JI2I 3CDJA 3GONA 2ZITA 4LOMA 5FLXQ 3Q6NA 5LMNI 1ZM9A 1Z0WA 2UXCI 3GMEA 4X66I 4JI7E 4XTJA 4FWDA 2NN6E 4DV1I 2O1VA 4BA2B 5K36E 2HHHI 1XXEA 2V8PA 3M85G 2V2QA 1OYSA 1HNWI 2LJPA 4IFDF 4IFDB 2HKJA 3CDIA 3K1JA 1Z0TA 1ZXMA 5IWAE 4WUDA 1MU5A 1N0UA 1Z0BA 3J81C 2AJ4A 4JYAI 2BA1D 1KTVA 4B3TE 4IFDA 1Y4SA 1HNZE 2V2ZA 5JEAC 4LF6E 2Z5BB 2Z5CB 4OO1C 3PYFA 1FJGI 4DUYE 4DR5E 5C0XD 4IZKB 4JI2E 1KIJA 2C39B 4ZVIA 3B78A 3J81Q 5LL6R 1XHKA 1ZXNA 4DV4E 3PYGA 3L7ZA 4I3HA 2Z5CA 4DR2I 1HR0I 4DV6I 1ZM3A 2PO2B 4R1FA 2HFSA 2HHHE 2XEXA 4IZKA 3P3GA 4LF5I 2R3VA 1NZ0A 4NXNI 3OTOI 4JI8E 1P42A 2WNRA 4PRXA 2O3ZA 4DR1I 1HNXE 4NXMI 4K0KI 2BA0G 4EMDA 5EKWA 2PO2A 4BA1B 4QNJA 4N3OA 4OZEA 4OKGA 2UUAE 1WUUA 4DR7E 3T1HI 4JI6E 1BKNA 3H4LA 2A2DA 1PVGA 3J80C 1FWLA 4DR3E 3HULA 3B82A 4HYMA 1S4EA 1MX0A 4IZJD 1I94I 5LMUI
chains in the Genus database with same CATH topology
2AE8A 4QNJA 4MU1A 4LPFA 5DNXA 4QNKA 4LOMA 2F1DA 5ELWA 5EL9A 1RHYA 4MU0A 4GQUA 5DNLA 4MU4A 5EKWA 4MU3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AE8 A;  4QNJ A;  4MU1 A;  4LPF A;  5DNX A;  4QNK A;  4LOM A;  2F1D A;  5ELW A;  5EL9 A;  1RHY A;  4MU0 A;  4GQU A;  5DNL A;  4MU4 A;  5EKW A;  4MU3 A; 
#chains in the Genus database with same CATH topology
 2UXD I;  3K85 A;  2V2V A;  2O1W A;  2UUB I;  4DR6 I;  3T1Y I;  4OX9 I;  4DV2 I;  4DUZ I;  2VQF E;  1PKP A;  1EA6 A;  2A2C A;  4DV6 E;  1N36 E;  4USM A;  3J80 Q;  3PS3 A;  3J7A G;  2WW4 A;  4HXZ A;  4USK A;  2GO3 A;  1N32 I;  4X64 I;  2UU9 E;  4M1K A;  2PO0 B;  1RHY A;  2R42 A;  4LF4 I;  1Z5A A;  4B3M I;  4LCF A;  1N34 I;  1IBL E;  3V2U C;  4OO1 B;  4OO1 F;  4LF7 E;  1Y4U A;  4FW4 A;  4DPT A;  5DRR A;  3T1H E;  3B4T A;  1Y5Y A;  3Q1Q A;  2CGE A;  4AID A;  5JEA D;  2IOQ A;  4B3S E;  5DRO A;  4FWH A;  3GLL A;  4DXL A;  2PNZ A;  1XNQ I;  5JEA A;  5BR8 E;  2EFG A;  2NN6 C;  2ZBK B;  4FW9 A;  2PO1 A;  4OO1 A;  4JI3 I;  1J5E I;  4JI4 I;  4MU1 A;  4URL A;  4X65 I;  4UTG A;  4DUZ E;  4YHH E;  3K17 A;  2PNL A;  1B63 A;  2X7I A;  2C38 B;  1Z0C A;  4LF8 E;  4LFB E;  3CWV A;  1OJ4 A;  2BA1 G;  4KHP I;  4DPW A;  1H72 C;  4LFC I;  3WU3 A;  4MU3 A;  4AQY I;  1N34 E;  4BA2 A;  4P52 A;  1IBK E;  2E5L I;  2UUC E;  4IFD D;  2UXB I;  3GCM A;  3WU5 A;  1A6F A;  4FN5 A;  4AM3 A;  4Z7C A;  4JV5 E;  4JI1 E;  1IBM I;  4UT4 A;  4DV3 I;  1YH8 A;  2ZM6 I;  2BM1 A;  1XMO E;  1J5E E;  5EL9 A;  1H7U A;  5FWK A;  5LMN E;  2UXC E;  3F0N A;  3M7N D;  4X66 E;  4FW6 A;  1DAR A;  4DV1 E;  3ZZU A;  2JEA B;  1FKA E;  5C0X B;  5C0X F;  1RRE A;  2Z5B A;  4LF9 I;  3HKM A;  2X36 A;  4YY3 I;  1USU A;  1S16 A;  1K47 A;  1NHI A;  3U1K A;  1KKH A;  1HNW E;  4KHP E;  2C39 A;  4JI0 I;  5JEA E;  4B3R I;  4X62 I;  1XMQ I;  2JEA A;  3P76 A;  3ZZ0 A;  2E1R A;  1FI4 A;  3PYD A;  5GME A;  4DV5 I;  2UXB E;  3QT6 A;  4JYA E;  2NN6 B;  2NN6 F;  3B8H A;  1UDN A;  4DV0 I;  1ZM2 A;  1UDS A;  4JI5 I;  5K36 B;  5K36 F;  4FW7 A;  5DRQ A;  4MDT A;  1FJG E;  5DNX A;  1USV A;  2IER A;  1XNR I;  4DPY A;  4GKJ I;  3LNU A;  1N33 I;  4BA1 A;  2AE8 A;  4Z7Y A;  2NN6 A;  1PIE A;  4IZJ B;  4LFA I;  3NZK A;  2F4V I;  4GQU A;  2DEJ A;  1ZM4 A;  3H1C A;  2O1T A;  4DR2 E;  1HR0 E;  2BR2 B;  3M6A A;  1QZR A;  3WU4 A;  4GKK I;  4IFD E;  5A2Q C;  4DV7 I;  2PNM A;  4DPX A;  5C0X C;  4LF5 E;  5DNL A;  4HY1 A;  2JEB B;  4MU4 A;  3OTO E;  4NXN E;  4ED4 A;  4DR4 I;  4DR1 E;  3QT5 A;  4NXM E;  4K0K E;  4JI7 I;  4WUB A;  2BR2 A;  3ZM7 A;  3QT7 A;  4LCG A;  4PRV A;  1E3P A;  3UHM A;  5A2Q Q;  2PO0 A;  2JEB A;  3DD6 A;  3Q6M A;  4NBQ A;  4OO1 D;  1I94 E;  1H73 A;  5LMU E;  4AIM A;  2UXD E;  4GKJ E;  2UUB E;  5K36 C;  2JT2 A;  4DR6 E;  3T1Y E;  4OX9 E;  3J7A M;  5IT9 C;  3PS2 A;  1E3H A;  4DV2 E;  4KQV A;  1HNZ I;  3LPS A;  4LF6 I;  1N0V C;  1R6L A;  1RR9 A;  2DEI A;  1OYR A;  1N32 E;  4X64 E;  4DUY I;  4DR5 I;  1YHC A;  1UDO A;  4LF4 E;  4DU7 A;  1VIS A;  4B3M E;  1EI1 A;  4DR4 E;  2VES A;  2WP8 B;  3ZKD A;  5IT9 Q;  4DV4 I;  5L3J A;  3KRN A;  2GQ0 A;  4FW5 A;  2VF3 A;  3PS1 A;  4HAC B;  2C38 A;  1KVK A;  3M7N G;  1H7S A;  5GMD A;  1H74 A;  2V34 A;  3ZKB A;  1XNQ E;  2WP8 A;  4JI8 I;  4U3D A;  4ISA A;  1HNX I;  4JI3 E;  2CG9 A;  3JAM C;  1Z59 A;  4HAC A;  4JI4 E;  1UEK A;  4PU9 A;  3M85 D;  1U2R A;  2UUA I;  4DR7 I;  1MG7 A;  4JI6 I;  1Z0G A;  4X65 E;  3P3E A;  2GO4 A;  4DR3 I;  3PYE A;  2JE6 B;  2O1U A;  3L7Z B;  4P7A A;  4LPF A;  3U1Y A;  3QT8 A;  2CVE A;  4LFC E;  1D6T A;  4OO1 E;  3JAM Q;  5C0X A;  4DPU A;  4AQY E;  2GS8 A;  2VQE I;  2WNR B;  1B62 A;  4MYU A;  2JE6 A;  2E5L E;  2VQF I;  4FWG A;  1Y6Z A;  1N36 I;  3LTO A;  2HK3 A;  2C37 B;  2Z5E A;  2J65 A;  2UU9 I;  1FWK A;  2HKE A;  1IBM E;  4DV3 E;  2ZM6 E;  2NN6 D;  3HJC A;  4J3D A;  3V5R A;  1ELO A;  4RPF A;  3ZZT A;  1HK7 A;  3P3C A;  1IBL I;  5K36 D;  4IFD C;  2HFU A;  4WUC A;  2C37 A;  4LF7 I;  5K36 A;  4LF9 E;  4YY3 E;  1Z5C A;  2Q2E B;  4B3S I;  2IOP A;  2F1D A;  2BA0 D;  2IES A;  5BR8 I;  4IZJ A;  4JI0 E;  4B3R E;  4LCH A;  4X62 E;  1XMQ E;  1UDQ A;  4DU8 A;  1Y60 A;  2BV3 A;  2VQE E;  2BM0 A;  4YHH I;  4DV5 E;  4DV0 E;  1OYP A;  4MQY A;  4JI5 E;  1Z5B A;  4LF8 I;  4LFB I;  4JG4 A;  4IS9 A;  4QNK A;  1VI7 A;  5IWA I;  1XNR E;  1N33 E;  5DRP A;  4U3B A;  1FNM A;  5FLX C;  4MYT A;  1NHJ A;  2PNZ B;  3P06 A;  2CZ9 A;  5JEA B;  5JEA F;  1IBK I;  5C0X E;  1Z0E A;  2UUC I;  4LFA E;  2F4V E;  2J7K A;  4MU0 A;  2PO1 B;  3PRY A;  1R6M A;  3D4J A;  4B3T I;  2HK2 A;  2OI2 A;  1Z0V A;  4GKK E;  4JV5 I;  4JI1 I;  4DV7 E;  3WU6 A;  1NHH A;  5ELW A;  1XMO I;  4FW3 A;  2NPF A;  4JI2 I;  3CDJ A;  3GON A;  2ZIT A;  4LOM A;  5FLX Q;  3Q6N A;  5LMN I;  1ZM9 A;  1Z0W A;  2UXC I;  3GME A;  4X66 I;  4JI7 E;  4XTJ A;  4FWD A;  2NN6 E;  4DV1 I;  2O1V A;  4BA2 B;  5K36 E;  2HHH I;  1XXE A;  2V8P A;  3M85 G;  2V2Q A;  1OYS A;  1HNW I;  2LJP A;  4IFD F;  4IFD B;  2HKJ A;  3CDI A;  3K1J A;  1Z0T A;  1ZXM A;  5IWA E;  4WUD A;  1MU5 A;  1N0U A;  1Z0B A;  3J81 C;  2AJ4 A;  4JYA I;  2BA1 D;  1KTV A;  4B3T E;  4IFD A;  1Y4S A;  1HNZ E;  2V2Z A;  5JEA C;  4LF6 E;  2Z5B B;  2Z5C B;  4OO1 C;  3PYF A;  1FJG I;  4DUY E;  4DR5 E;  5C0X D;  4IZK B;  4JI2 E;  1KIJ A;  2C39 B;  4ZVI A;  3B78 A;  3J81 Q;  5LL6 R;  1XHK A;  1ZXN A;  4DV4 E;  3PYG A;  3L7Z A;  4I3H A;  2Z5C A;  4DR2 I;  1HR0 I;  4DV6 I;  1ZM3 A;  2PO2 B;  4R1F A;  2HFS A;  2HHH E;  2XEX A;  4IZK A;  3P3G A;  4LF5 I;  2R3V A;  1NZ0 A;  4NXN I;  3OTO I;  4JI8 E;  1P42 A;  2WNR A;  4PRX A;  2O3Z A;  4DR1 I;  1HNX E;  4NXM I;  4K0K I;  2BA0 G;  4EMD A;  5EKW A;  2PO2 A;  4BA1 B;  4QNJ A;  4N3O A;  4OZE A;  4OKG A;  2UUA E;  1WUU A;  4DR7 E;  3T1H I;  4JI6 E;  1BKN A;  3H4L A;  2A2D A;  1PVG A;  3J80 C;  1FWL A;  4DR3 E;  3HUL A;  3B82 A;  4HYM A;  1S4E A;  1MX0 A;  4IZJ D;  1I94 I;  5LMU I; 
#chains in the Genus database with same CATH homology
 2AE8 A;  4QNJ A;  4MU1 A;  4LPF A;  5DNX A;  4QNK A;  4LOM A;  2F1D A;  5ELW A;  5EL9 A;  1RHY A;  4MU0 A;  4GQU A;  5DNL A;  4MU4 A;  5EKW A;  4MU3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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