5EKWA

A. thaliana igpd2 in complex with the racemate of the triazole-phosphonate inhibitor, c348
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
194
structure length
194
Chain Sequence
b'SARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKG'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
publication title Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Lyase
total genus 61
structure length 194
sequence length 194
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2015-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 5ekwA02
5DNLA 4LOMA 5DNXA 4QNKA 2F1DA 4MU3A 5EL9A 5EKWA 4MU0A 4MU4A 4GQUA 4LPFA 4QNJA 4MU1A 5ELWA 1RHYA 2AE8A
chains in the Genus database with same CATH superfamily
2WP8B 5EL9A 1OYSA 4JI7I 1EI1A 4IFDD 5FLXQ 2GO4A 4LF9I 4DV0E 1NHJA 5A2QC 4BA2A 1D6TA 1ZM9A 2VESA 4JI2E 1HR0I 4LPFA 2O1WA 4JI6I 3QT8A 4JYAI 3PS1A 3ZKBA 1MU5A 1I94E 4JI1E 4OX9E 2E5LE 4LOMA 4DR5E 3L7ZB 1ZXMA 4FW3A 3WU5A 2VF3A 1ELOA 1UDQA 1Z0WA 4DR6E 5JEAE 4K0KE 3M85G 4WUDA 4DV5E 2PNZA 3M85D 1USUA 3HJCA 1B62A 4U3BA 4JI3I 3K1JA 4JI5I 1ZM2A 4IFDF 3PYEA 4Z7YA 3GCMA 4LCGA 1N33I 2X7IA 4NXNI 4DPWA 5C0XC 1H73A 1K47A 1PVGA 4LFBE 4MYTA 1YHCA 2VQEI 5EKWA 1QZRA 2UXDI 2HKJA 1XMOE 4LF7I 4NXME 2NN6E 1HNZI 1Z0CA 2F4VI 1N32I 4I3HA 2JEBA 2R3VA 5JEAA 4DR1E 4GQUA 3GLLA 3K85A 2UXBE 5ELWA 2IOQA 4IZJA 4MQYA 2AJ4A 1N36I 4HACA 4FWGA 4AQYI 1HNXE 4FW7A 4QNJA 4DUYE 1XNRI 2F1DA 2NPFA 4URLA 3J81C 1H74A 2Z5BB 3V5RA 4LFCE 2OI2A 4DV4I 5K36C 4KHPI 3J7AM 4MU4A 5C0XB 2LJPA 4LF4I 1A6FA 4FW6A 4IFDC 4JI0E 4M1KA 4X64I 4DV3I 2WNRA 4DR2I 3K17A 4YHHE 5JEAD 2UXCE 3LNUA 4LF6I 1KKHA 4GKKI 4IZJD 3QT7A 2NN6A 1KIJA 4FW5A 3M7NG 2UUCE 5IT9Q 5LMNI 1DARA 4FN5A 3M7ND 2NN6B 3WU3A 4ED4A 1IBKE 1P42A 4DR7I 4BA1B 3J80C 2WP8A 1Z0TA 4B3RE 4OO1C 4NBQA 2O1TA 2O3ZA 4YY3E 1Y4UA 4X65E 4WUBA 4AIMA 4LCFA 5K36B 4PU9A 4LF8E 2Z5EA 2J65A 4P52A 4DPYA 1S16A 4ZVIA 3ZKDA 4B3SE 4MDTA 4DPXA 4N3OA 3HKMA 4JI1I 4OX9I 1S4EA 5JEAF 4QNKA 2E1RA 4JG4A 5L3JA 1N34I 3T1HI 3D4JA 2GS8A 2HK3A 3F0NA 2JT2A 5A2QQ 3L7ZA 3GONA 3B82A 3B4TA 1RREA 1UDNA 4U3DA 2BV3A 4DV1I 4LF5I 1XXEA 1WUUA 4LFAE 3KRNA 4DR3I 4MU3A 4OO1B 4XTJA 4B3TI 4JI7E 4DV6E 3B8HA 1Z5CA 2ZM6E 4FWDA 4JI4I 4LFBI 3P3GA 5C0XE 4OZEA 3H4LA 3Q6NA 4USMA 2PNLA 2HHHE 2IERA 3U1YA 2A2CA 4KQVA 3V2UC 4DV2I 3CWVA 3DD6A 1XMOI 2GQ0A 1FJGE 1NHHA 4HYMA 4UTGA 2C38B 1Z0EA 4DR4I 2V2VA 1HK7A 5DNXA 2PNMA 3ZZ0A 3WU6A 1YH8A 1XMQI 2C37A 2UXBI 3GMEA 1E3HA 3WU4A 4JV5I 1HNXI 2C37B 4DUYI 4PRXA 1NZ0A 1IBMI 4X62I 2UUAI 4P7AA 4LFCI 4JI3E 1XNQI 4MU0A 4JI5E 4GKJI 1ZM3A 2Z5BA 4DUZI 5K36E 3JAMC 2BA1G 2Z5CA 1XHKA 5C0XA 2A2DA 1Z59A 4NXNE 4IFDE 2BA1D 1Z0VA 3H1CA 3J81Q 2DEJA 2Z5CB 5IWAE 1Y4SA 1Z5BA 3T1YI 1UEKA 1HNWI 1IBLI 3P76A 3PS3A 2ZITA 1UDSA 5GMEA 3OTOE 5DRRA 4WUCA 4X66I 2F4VE 1Y60A 1IBKI 1VI7A 3P3EA 3CDJA 2UUBI 3UHMA 4MU1A 4FWHA 2PO0B 4BA1A 2IOPA 2UU9E 5C0XD 1N36E 4OO1E 5BR8I 2BM1A 1J5EE 4AQYE 3P06A 1H7SA 1XNRE 2V2QA 4B3ME 2JEAB 5LL6R 4DV7E 5DRQA 2WW4A 5GMDA 2EFGA 1U2RA 5K36A 3QT5A 4HY1A 4B3SI 3J80Q 4DV4E 2HKEA 2IESA 4IFDA 2BR2B 4DV0I 5DRPA 1ZXNA 4JI2I 4LF4E 2NN6D 4X64E 4DV3E 1ZM4A 1N0VC 3PYGA 4IFDB 4DU8A 4LF6E 2JE6B 4GKKE 1NHIA 4JI8E 2VQFE 1I94I 2E5LI 1Y6ZA 4IS9A 2BA0G 1Z0BA 4DR5I 3ZZTA 4FW4A 5LMNE 1FNMA 3PYFA 4LFAI 4R1FA 4DR6I 4K0KI 2BA0D 2HFSA 4RPFA 4DPTA 5K36D 4IZKB 1Z5AA 5FLXC 3PS2A 4OKGA 4DV5I 2AE8A 2X36A 3U1KA 5C0XF 4DR7E 1B63A 3ZM7A 4OO1A 4DV6I 2O1UA 2ZM6I 3LTOA 1N0UA 1VISA 5LMUE 1MG7A 4EMDA 2HHHI 2V34A 1FJGI 3Q6MA 2GO3A 1R6MA 5DNLA 4LF9E 4BA2B 5FWKA 1Y5YA 2NN6F 1OYRA 2C38A 1N34E 3T1HE 2V2ZA 1HR0E 4NXMI 1USVA 3PYDA 4JI6E 4OO1D 2HK2A 4JYAE 2XEXA 4AM3A 1FI4A 1R6LA 2O1VA 3J7AG 1KVKA 3B78A 2DEIA 4DR1I 5K36F 4DV1E 4LF5E 3P3CA 4AIDA 5JEAC 4DXLA 4DR3E 2CGEA 2PNZB 4B3TE 4DU7A 2BM0A 1MX0A 4JI4E 3QT6A 3Q1QA 1PIEA 5IWAI 1RHYA 2ZBKB 2PO2A 4DV2E 1N33E 4JI0I 3OTOI 4YHHI 3JAMQ 2UXCI 4DR4E 1FWLA 2PO2B 4OO1F 2VQEE 1XMQE 2UXDE 2UUCI 2J7KA 2NN6C 3HULA 2UU9I 4LF7E 1BKNA 1FWKA 2HFUA 2JEBB 1HNZE 2PO0A 2C39A 1J5EI 1N32E 1H72C 4JV5E 5JEAB 4LCHA 2V8PA 1EA6A 4B3MI 1H7UA 4DV7I 1IBME 4IZJB 4HACB 4X62E 2UUAE 2C39B 2JEAA 1PKPA 4B3RI 1XNQE 4YY3I 4GKJE 3ZZUA 2R42A 1OJ4A 4X65I 4DUZE 4ISAA 4J3DA 1Z0GA 2BR2A 4LF8I 3PRYA 2CVEA 1UDOA 4JI8I 2VQFI 3LPSA 4UT4A 5IT9C 4KHPE 3T1YE 1FKAE 1KTVA 1OYPA 2JE6A 1HNWE 2WNRB 1IBLE 4FW9A 4MYUA 3NZKA 4USKA 4DR2E 4Z7CA 3CDIA 4X66E 2Q2EB 1RR9A 4HXZA 2PO1A 2UUBE 3M6AA 4IZKA 2CG9A 5DROA 1E3PA 4DPUA 2CZ9A 4PRVA 2PO1B 5LMUI 5BR8E
chains in the Genus database with same CATH topology
5DNLA 4LOMA 5DNXA 4QNKA 2F1DA 4MU3A 5EL9A 5EKWA 4MU0A 4MU4A 4GQUA 4LPFA 4QNJA 4MU1A 5ELWA 1RHYA 2AE8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DNL A;  4LOM A;  5DNX A;  4QNK A;  2F1D A;  4MU3 A;  5EL9 A;  5EKW A;  4MU0 A;  4MU4 A;  4GQU A;  4LPF A;  4QNJ A;  4MU1 A;  5ELW A;  1RHY A;  2AE8 A; 
#chains in the Genus database with same CATH topology
 2WP8 B;  5EL9 A;  1OYS A;  4JI7 I;  1EI1 A;  4IFD D;  5FLX Q;  2GO4 A;  4LF9 I;  4DV0 E;  1NHJ A;  5A2Q C;  4BA2 A;  1D6T A;  1ZM9 A;  2VES A;  4JI2 E;  1HR0 I;  4LPF A;  2O1W A;  4JI6 I;  3QT8 A;  4JYA I;  3PS1 A;  3ZKB A;  1MU5 A;  1I94 E;  4JI1 E;  4OX9 E;  2E5L E;  4LOM A;  4DR5 E;  3L7Z B;  1ZXM A;  4FW3 A;  3WU5 A;  2VF3 A;  1ELO A;  1UDQ A;  1Z0W A;  4DR6 E;  5JEA E;  4K0K E;  3M85 G;  4WUD A;  4DV5 E;  2PNZ A;  3M85 D;  1USU A;  3HJC A;  1B62 A;  4U3B A;  4JI3 I;  3K1J A;  4JI5 I;  1ZM2 A;  4IFD F;  3PYE A;  4Z7Y A;  3GCM A;  4LCG A;  1N33 I;  2X7I A;  4NXN I;  4DPW A;  5C0X C;  1H73 A;  1K47 A;  1PVG A;  4LFB E;  4MYT A;  1YHC A;  2VQE I;  5EKW A;  1QZR A;  2UXD I;  2HKJ A;  1XMO E;  4LF7 I;  4NXM E;  2NN6 E;  1HNZ I;  1Z0C A;  2F4V I;  1N32 I;  4I3H A;  2JEB A;  2R3V A;  5JEA A;  4DR1 E;  4GQU A;  3GLL A;  3K85 A;  2UXB E;  5ELW A;  2IOQ A;  4IZJ A;  4MQY A;  2AJ4 A;  1N36 I;  4HAC A;  4FWG A;  4AQY I;  1HNX E;  4FW7 A;  4QNJ A;  4DUY E;  1XNR I;  2F1D A;  2NPF A;  4URL A;  3J81 C;  1H74 A;  2Z5B B;  3V5R A;  4LFC E;  2OI2 A;  4DV4 I;  5K36 C;  4KHP I;  3J7A M;  4MU4 A;  5C0X B;  2LJP A;  4LF4 I;  1A6F A;  4FW6 A;  4IFD C;  4JI0 E;  4M1K A;  4X64 I;  4DV3 I;  2WNR A;  4DR2 I;  3K17 A;  4YHH E;  5JEA D;  2UXC E;  3LNU A;  4LF6 I;  1KKH A;  4GKK I;  4IZJ D;  3QT7 A;  2NN6 A;  1KIJ A;  4FW5 A;  3M7N G;  2UUC E;  5IT9 Q;  5LMN I;  1DAR A;  4FN5 A;  3M7N D;  2NN6 B;  3WU3 A;  4ED4 A;  1IBK E;  1P42 A;  4DR7 I;  4BA1 B;  3J80 C;  2WP8 A;  1Z0T A;  4B3R E;  4OO1 C;  4NBQ A;  2O1T A;  2O3Z A;  4YY3 E;  1Y4U A;  4X65 E;  4WUB A;  4AIM A;  4LCF A;  5K36 B;  4PU9 A;  4LF8 E;  2Z5E A;  2J65 A;  4P52 A;  4DPY A;  1S16 A;  4ZVI A;  3ZKD A;  4B3S E;  4MDT A;  4DPX A;  4N3O A;  3HKM A;  4JI1 I;  4OX9 I;  1S4E A;  5JEA F;  4QNK A;  2E1R A;  4JG4 A;  5L3J A;  1N34 I;  3T1H I;  3D4J A;  2GS8 A;  2HK3 A;  3F0N A;  2JT2 A;  5A2Q Q;  3L7Z A;  3GON A;  3B82 A;  3B4T A;  1RRE A;  1UDN A;  4U3D A;  2BV3 A;  4DV1 I;  4LF5 I;  1XXE A;  1WUU A;  4LFA E;  3KRN A;  4DR3 I;  4MU3 A;  4OO1 B;  4XTJ A;  4B3T I;  4JI7 E;  4DV6 E;  3B8H A;  1Z5C A;  2ZM6 E;  4FWD A;  4JI4 I;  4LFB I;  3P3G A;  5C0X E;  4OZE A;  3H4L A;  3Q6N A;  4USM A;  2PNL A;  2HHH E;  2IER A;  3U1Y A;  2A2C A;  4KQV A;  3V2U C;  4DV2 I;  3CWV A;  3DD6 A;  1XMO I;  2GQ0 A;  1FJG E;  1NHH A;  4HYM A;  4UTG A;  2C38 B;  1Z0E A;  4DR4 I;  2V2V A;  1HK7 A;  5DNX A;  2PNM A;  3ZZ0 A;  3WU6 A;  1YH8 A;  1XMQ I;  2C37 A;  2UXB I;  3GME A;  1E3H A;  3WU4 A;  4JV5 I;  1HNX I;  2C37 B;  4DUY I;  4PRX A;  1NZ0 A;  1IBM I;  4X62 I;  2UUA I;  4P7A A;  4LFC I;  4JI3 E;  1XNQ I;  4MU0 A;  4JI5 E;  4GKJ I;  1ZM3 A;  2Z5B A;  4DUZ I;  5K36 E;  3JAM C;  2BA1 G;  2Z5C A;  1XHK A;  5C0X A;  2A2D A;  1Z59 A;  4NXN E;  4IFD E;  2BA1 D;  1Z0V A;  3H1C A;  3J81 Q;  2DEJ A;  2Z5C B;  5IWA E;  1Y4S A;  1Z5B A;  3T1Y I;  1UEK A;  1HNW I;  1IBL I;  3P76 A;  3PS3 A;  2ZIT A;  1UDS A;  5GME A;  3OTO E;  5DRR A;  4WUC A;  4X66 I;  2F4V E;  1Y60 A;  1IBK I;  1VI7 A;  3P3E A;  3CDJ A;  2UUB I;  3UHM A;  4MU1 A;  4FWH A;  2PO0 B;  4BA1 A;  2IOP A;  2UU9 E;  5C0X D;  1N36 E;  4OO1 E;  5BR8 I;  2BM1 A;  1J5E E;  4AQY E;  3P06 A;  1H7S A;  1XNR E;  2V2Q A;  4B3M E;  2JEA B;  5LL6 R;  4DV7 E;  5DRQ A;  2WW4 A;  5GMD A;  2EFG A;  1U2R A;  5K36 A;  3QT5 A;  4HY1 A;  4B3S I;  3J80 Q;  4DV4 E;  2HKE A;  2IES A;  4IFD A;  2BR2 B;  4DV0 I;  5DRP A;  1ZXN A;  4JI2 I;  4LF4 E;  2NN6 D;  4X64 E;  4DV3 E;  1ZM4 A;  1N0V C;  3PYG A;  4IFD B;  4DU8 A;  4LF6 E;  2JE6 B;  4GKK E;  1NHI A;  4JI8 E;  2VQF E;  1I94 I;  2E5L I;  1Y6Z A;  4IS9 A;  2BA0 G;  1Z0B A;  4DR5 I;  3ZZT A;  4FW4 A;  5LMN E;  1FNM A;  3PYF A;  4LFA I;  4R1F A;  4DR6 I;  4K0K I;  2BA0 D;  2HFS A;  4RPF A;  4DPT A;  5K36 D;  4IZK B;  1Z5A A;  5FLX C;  3PS2 A;  4OKG A;  4DV5 I;  2AE8 A;  2X36 A;  3U1K A;  5C0X F;  4DR7 E;  1B63 A;  3ZM7 A;  4OO1 A;  4DV6 I;  2O1U A;  2ZM6 I;  3LTO A;  1N0U A;  1VIS A;  5LMU E;  1MG7 A;  4EMD A;  2HHH I;  2V34 A;  1FJG I;  3Q6M A;  2GO3 A;  1R6M A;  5DNL A;  4LF9 E;  4BA2 B;  5FWK A;  1Y5Y A;  2NN6 F;  1OYR A;  2C38 A;  1N34 E;  3T1H E;  2V2Z A;  1HR0 E;  4NXM I;  1USV A;  3PYD A;  4JI6 E;  4OO1 D;  2HK2 A;  4JYA E;  2XEX A;  4AM3 A;  1FI4 A;  1R6L A;  2O1V A;  3J7A G;  1KVK A;  3B78 A;  2DEI A;  4DR1 I;  5K36 F;  4DV1 E;  4LF5 E;  3P3C A;  4AID A;  5JEA C;  4DXL A;  4DR3 E;  2CGE A;  2PNZ B;  4B3T E;  4DU7 A;  2BM0 A;  1MX0 A;  4JI4 E;  3QT6 A;  3Q1Q A;  1PIE A;  5IWA I;  1RHY A;  2ZBK B;  2PO2 A;  4DV2 E;  1N33 E;  4JI0 I;  3OTO I;  4YHH I;  3JAM Q;  2UXC I;  4DR4 E;  1FWL A;  2PO2 B;  4OO1 F;  2VQE E;  1XMQ E;  2UXD E;  2UUC I;  2J7K A;  2NN6 C;  3HUL A;  2UU9 I;  4LF7 E;  1BKN A;  1FWK A;  2HFU A;  2JEB B;  1HNZ E;  2PO0 A;  2C39 A;  1J5E I;  1N32 E;  1H72 C;  4JV5 E;  5JEA B;  4LCH A;  2V8P A;  1EA6 A;  4B3M I;  1H7U A;  4DV7 I;  1IBM E;  4IZJ B;  4HAC B;  4X62 E;  2UUA E;  2C39 B;  2JEA A;  1PKP A;  4B3R I;  1XNQ E;  4YY3 I;  4GKJ E;  3ZZU A;  2R42 A;  1OJ4 A;  4X65 I;  4DUZ E;  4ISA A;  4J3D A;  1Z0G A;  2BR2 A;  4LF8 I;  3PRY A;  2CVE A;  1UDO A;  4JI8 I;  2VQF I;  3LPS A;  4UT4 A;  5IT9 C;  4KHP E;  3T1Y E;  1FKA E;  1KTV A;  1OYP A;  2JE6 A;  1HNW E;  2WNR B;  1IBL E;  4FW9 A;  4MYU A;  3NZK A;  4USK A;  4DR2 E;  4Z7C A;  3CDI A;  4X66 E;  2Q2E B;  1RR9 A;  4HXZ A;  2PO1 A;  2UUB E;  3M6A A;  4IZK A;  2CG9 A;  5DRO A;  1E3P A;  4DPU A;  2CZ9 A;  4PRV A;  2PO1 B;  5LMU I;  5BR8 E; 
#chains in the Genus database with same CATH homology
 5DNL A;  4LOM A;  5DNX A;  4QNK A;  2F1D A;  4MU3 A;  5EL9 A;  5EKW A;  4MU0 A;  4MU4 A;  4GQU A;  4LPF A;  4QNJ A;  4MU1 A;  5ELW A;  1RHY A;  2AE8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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