5EP8A

X-ray structure of the complex pyrimidine-nucleoside phosphorylase from bacillus subtilis with sulfate ion
Total Genus 146
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
433
structure length
433
Chain Sequence
MRMVDIIIKKQNGKELTTEEIQFFVNGYTDGSIPDYQASALAMAIFFRDMSDRERADLTMAMVNSGETIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAALDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVELTKREFIKLVNRDKVAVIGQSGNLTPADKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAAELAKAMVRIGNNVGRQTMAVISDMSQPLGFAIGNALEVKEAIDTLKGEGPEDLHELVLTLGSQMVVLAKKADTLDEARAKLEEVMKNGKALEKFKDFLKNQGGDSSIVDDPSKLPQAAYQIDVPAKEAGVVSEIVADEIGVAAMLLGAGRATKEDEIDLAVGIMLRKKVGDKVEKGEPLVTLYANRENVDEVIAKVYDNIRIAAEAKAPKLIHTLITE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Pyrimidine-nucleoside phosphorylase
publication title X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis with Sulfate Ion
rcsb
source organism Bacillus subtilis subsp. subtilis str. 168
total genus 146
structure length 433
sequence length 433
chains with identical sequence B
ec nomenclature ec 2.4.2.2: Pyrimidine-nucleoside phosphorylase.
pdb deposition date 2015-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 5ep8A01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 5ep8A02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 5ep8A03
5EY3A 1KHDA 4OWQA 3R6CA 4GA6A 1VQUA 5C1RA 4X5DA 5EP8A 1UOUA 2J0FA 4GA4A 2DSJA 4ZTVA 1AZYA 5BO2A 3QR9A 1OTPA 4X5BA 4GA5A 4X46A 5BO3A 3H5QA 2ELCA 4IJ1A 4LHMA 4N93A 1O17A 4X5AA 4MUOA 4ZOKA 5C2LA 2BPQA 4N8QA 4XR5A 4GIUA 4YI7A 4X59A 1ZVWA 4EAFA 4OWSA 3QS8A 3R88A 1ZYKA 3UU1A 4GKMA 1GXBA 4OWOA 1V8GA 1KGZA 4ZOFA 4ZOJA 2TPTA 4OWUA 5BNEA 5C7SA 3GBRA 3QQSA 4OWNA 4X5CA 4X5EA 2WK6A 4OWVA 2GVQA 4YEKA 4HKMA 4M0RA 4N5VA 2WK5A 5BYTA 4EADA 4X58A 1BRWA 4YYYA 3TWPA 4OWMA 4GTNA 1ZXYA 3QSAA
chains in the Genus database with same CATH superfamily
1K8AJ 3CCEH 5EY3A 2QIEA 1JJ2H 1KHDA 4OWQA 3R6CA 1JROB 1YTDA 3AN1A 1N62B 1Q82J 1QVGH 4GA6A 1NJIJ 3CMEH 1VQUA 5C1RA 3C2OA 4X5DA 2PA2A 5EP8A 1QVFH 5JVGJ 1YHQH 2W3SB 5AYXA 1UOUA 2J0FA 3EUB4 4GA4A 3C2RA 2DSJA 1VQOH 4ZTVA 1VQ8H 1AZYA 5BO2A 3I55H 3QR9A 3C2FA 1OTPA 1QPQA 1YI2H 3C2VA 1RRZA 3L4PA 5DM7J 5AN9F 1FO4A 3NS1C 5MLCO 4X5BA 4WFBJ 3CF5J 2I1OA 5GAGN 2ZJRJ 4GA5A 4X46A 2W3RB 2W54B 1VQPH 2I14A 2OMDA 4US9A 5BO3A 1VQKH 3CCRH 2W55B 3WO0A 3H5QA 4WFNJ 3OW2H 3SR6C 3CCSH 1Q81J 4WFAJ 2WP4A 2JBMA 2ELCA 4IJ1A 1FFVB 3CD6H 1N61B 3G71H 3CCLH 1K73J 4LHMA 4N93A 2B7QA 5GAHN 1K9MJ 1O17A 4X5AA 4MUOA 1YITH 4ZOKA 5C2LA 3CCJH 3FAHA 3PAJA 1FIQC 1QPRA 2BPQA 4AP8A 3FC4A 3CCQH 3VMMA 4N8QA 4XR5A 4GIUA 4YI7A 1NVJA 1VLBA 3I56H 4F3FC 5GAEN 1N5WB 3CCMH 4X59A 5GADN 5HUPA 1YTKA 1N5XA 1ZXIB 5HUOA 4C7ZA 5H1SO 4ZOHA 5DM6J 1Q7YJ 1VQ7H 2Q5WE 1QPNA 1N63B 1YTEA 1ZVWA 3NRZC 1NVIE 3BIIE 1M90J 1X1OA 3AMZA 3CC2H 4EAFA 4OWSA 1WKIA 1VQ9H 3DLLJ 3QS8A 1W2BH 3G6EH 3NVYC 1RF8B 3R88A 4C7YA 1SIJA 1ZYKA 3CMAH 1YIJH 3UU1A 4GKMA 1N8RJ 1GXBA 4OWOA 1V8GA 1FFUB 1RM6A 3C2EA 4KWVA 4C80A 3CPWH 1QPOA 1Q86J 2QEXH 1QAPA 1KGZA 3PIPJ 4ZOFA 4ZOJA 2TPTA 4OWUA 5BNEA 5C7SA 1WYGA 3PIOJ 1V97A 3GBRA 3CC4H 1KC8J 1Y69K 3CXCH 3QQSA 4OWNA 4X5CA 1O4UA 3AM9A 3G4SH 1FMAE 4X5EA 3WNZA 1VQ6H 2WK6A 1JRPB 4IOCJ 5HL7J 3TQVA 1M1KJ 5AYZA 1KQSH 4IO9J 4OWVA 1YJNH 5MPOC 2B7PA 1N60B 2GVQA 4USAA 4YEKA 5JVHJ 4HKMA 4M0RA 3J7ZM 4N5VA 2WK5A 4U67J 2ZJPJ 2ZJQJ 3CCVH 5BYTA 4KWWA 1VQLH 4UY8M 4EADA 1S72H 4X58A 1FM0E 3CCUH 1YJWH 1BRWA 1VQNH 2B7NA 2QA4H 3NVVC 4YYYA 3NVZC 3RPFA 3TWPA 1VQMH 4OWMA 5HULA 1KD1J 2OTLH 3ETRC 4GTNA 1VDVA 3L0GA 1VQ4H 3GNNA 3NVWC 2E3TA 4US8A 1SB3A 1DGJA 5AYYA 4I9AA 3WO1A 1ZXYA 3QSAA 2OTJH 1VQ5H 4IOAJ 4WF9J 4WCEJ 1YJ9H 3CC7H 3B9JC
chains in the Genus database with same CATH topology
5EY3A 1KHDA 4OWQA 3R6CA 4GA6A 1VQUA 5C1RA 4X5DA 5EP8A 1UOUA 2J0FA 4GA4A 2DSJA 4ZTVA 1AZYA 5BO2A 3QR9A 1OTPA 4X5BA 4GA5A 4X46A 5BO3A 3H5QA 2ELCA 4IJ1A 4LHMA 4N93A 1O17A 4X5AA 4MUOA 4ZOKA 5C2LA 2BPQA 4N8QA 4XR5A 4GIUA 4YI7A 4X59A 1ZVWA 4EAFA 4OWSA 3QS8A 3R88A 1ZYKA 3UU1A 4GKMA 1GXBA 4OWOA 1V8GA 1KGZA 4ZOFA 4ZOJA 2TPTA 4OWUA 5BNEA 5C7SA 3GBRA 3QQSA 4OWNA 4X5CA 4X5EA 2WK6A 4OWVA 2GVQA 4YEKA 4HKMA 4M0RA 4N5VA 2WK5A 5BYTA 4EADA 4X58A 1BRWA 4YYYA 3TWPA 4OWMA 4GTNA 1ZXYA 3QSAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EY3 A;  1KHD A;  4OWQ A;  3R6C A;  4GA6 A;  1VQU A;  5C1R A;  4X5D A;  5EP8 A;  1UOU A;  2J0F A;  4GA4 A;  2DSJ A;  4ZTV A;  1AZY A;  5BO2 A;  3QR9 A;  1OTP A;  4X5B A;  4GA5 A;  4X46 A;  5BO3 A;  3H5Q A;  2ELC A;  4IJ1 A;  4LHM A;  4N93 A;  1O17 A;  4X5A A;  4MUO A;  4ZOK A;  5C2L A;  2BPQ A;  4N8Q A;  4XR5 A;  4GIU A;  4YI7 A;  4X59 A;  1ZVW A;  4EAF A;  4OWS A;  3QS8 A;  3R88 A;  1ZYK A;  3UU1 A;  4GKM A;  1GXB A;  4OWO A;  1V8G A;  1KGZ A;  4ZOF A;  4ZOJ A;  2TPT A;  4OWU A;  5BNE A;  5C7S A;  3GBR A;  3QQS A;  4OWN A;  4X5C A;  4X5E A;  2WK6 A;  4OWV A;  2GVQ A;  4YEK A;  4HKM A;  4M0R A;  4N5V A;  2WK5 A;  5BYT A;  4EAD A;  4X58 A;  1BRW A;  4YYY A;  3TWP A;  4OWM A;  4GTN A;  1ZXY A;  3QSA A; 
#chains in the Genus database with same CATH topology
 1K8A J;  3CCE H;  5EY3 A;  2QIE A;  1JJ2 H;  1KHD A;  4OWQ A;  3R6C A;  1JRO B;  1YTD A;  3AN1 A;  1N62 B;  1Q82 J;  1QVG H;  4GA6 A;  1NJI J;  3CME H;  1VQU A;  5C1R A;  3C2O A;  4X5D A;  2PA2 A;  5EP8 A;  1QVF H;  5JVG J;  1YHQ H;  2W3S B;  5AYX A;  1UOU A;  2J0F A;  3EUB 4;  4GA4 A;  3C2R A;  2DSJ A;  1VQO H;  4ZTV A;  1VQ8 H;  1AZY A;  5BO2 A;  3I55 H;  3QR9 A;  3C2F A;  1OTP A;  1QPQ A;  1YI2 H;  3C2V A;  1RRZ A;  3L4P A;  5DM7 J;  5AN9 F;  1FO4 A;  3NS1 C;  5MLC O;  4X5B A;  4WFB J;  3CF5 J;  2I1O A;  5GAG N;  2ZJR J;  4GA5 A;  4X46 A;  2W3R B;  2W54 B;  1VQP H;  2I14 A;  2OMD A;  4US9 A;  5BO3 A;  1VQK H;  3CCR H;  2W55 B;  3WO0 A;  3H5Q A;  4WFN J;  3OW2 H;  3SR6 C;  3CCS H;  1Q81 J;  4WFA J;  2WP4 A;  2JBM A;  2ELC A;  4IJ1 A;  1FFV B;  3CD6 H;  1N61 B;  3G71 H;  3CCL H;  1K73 J;  4LHM A;  4N93 A;  2B7Q A;  5GAH N;  1K9M J;  1O17 A;  4X5A A;  4MUO A;  1YIT H;  4ZOK A;  5C2L A;  3CCJ H;  3FAH A;  3PAJ A;  1FIQ C;  1QPR A;  2BPQ A;  4AP8 A;  3FC4 A;  3CCQ H;  3VMM A;  4N8Q A;  4XR5 A;  4GIU A;  4YI7 A;  1NVJ A;  1VLB A;  3I56 H;  4F3F C;  5GAE N;  1N5W B;  3CCM H;  4X59 A;  5GAD N;  5HUP A;  1YTK A;  1N5X A;  1ZXI B;  5HUO A;  4C7Z A;  5H1S O;  4ZOH A;  5DM6 J;  1Q7Y J;  1VQ7 H;  2Q5W E;  1QPN A;  1N63 B;  1YTE A;  1ZVW A;  3NRZ C;  1NVI E;  3BII E;  1M90 J;  1X1O A;  3AMZ A;  3CC2 H;  4EAF A;  4OWS A;  1WKI A;  1VQ9 H;  3DLL J;  3QS8 A;  1W2B H;  3G6E H;  3NVY C;  1RF8 B;  3R88 A;  4C7Y A;  1SIJ A;  1ZYK A;  3CMA H;  1YIJ H;  3UU1 A;  4GKM A;  1N8R J;  1GXB A;  4OWO A;  1V8G A;  1FFU B;  1RM6 A;  3C2E A;  4KWV A;  4C80 A;  3CPW H;  1QPO A;  1Q86 J;  2QEX H;  1QAP A;  1KGZ A;  3PIP J;  4ZOF A;  4ZOJ A;  2TPT A;  4OWU A;  5BNE A;  5C7S A;  1WYG A;  3PIO J;  1V97 A;  3GBR A;  3CC4 H;  1KC8 J;  1Y69 K;  3CXC H;  3QQS A;  4OWN A;  4X5C A;  1O4U A;  3AM9 A;  3G4S H;  1FMA E;  4X5E A;  3WNZ A;  1VQ6 H;  2WK6 A;  1JRP B;  4IOC J;  5HL7 J;  3TQV A;  1M1K J;  5AYZ A;  1KQS H;  4IO9 J;  4OWV A;  1YJN H;  5MPO C;  2B7P A;  1N60 B;  2GVQ A;  4USA A;  4YEK A;  5JVH J;  4HKM A;  4M0R A;  3J7Z M;  4N5V A;  2WK5 A;  4U67 J;  2ZJP J;  2ZJQ J;  3CCV H;  5BYT A;  4KWW A;  1VQL H;  4UY8 M;  4EAD A;  1S72 H;  4X58 A;  1FM0 E;  3CCU H;  1YJW H;  1BRW A;  1VQN H;  2B7N A;  2QA4 H;  3NVV C;  4YYY A;  3NVZ C;  3RPF A;  3TWP A;  1VQM H;  4OWM A;  5HUL A;  1KD1 J;  2OTL H;  3ETR C;  4GTN A;  1VDV A;  3L0G A;  1VQ4 H;  3GNN A;  3NVW C;  2E3T A;  4US8 A;  1SB3 A;  1DGJ A;  5AYY A;  4I9A A;  3WO1 A;  1ZXY A;  3QSA A;  2OTJ H;  1VQ5 H;  4IOA J;  4WF9 J;  4WCE J;  1YJ9 H;  3CC7 H;  3B9J C; 
#chains in the Genus database with same CATH homology
 5EY3 A;  1KHD A;  4OWQ A;  3R6C A;  4GA6 A;  1VQU A;  5C1R A;  4X5D A;  5EP8 A;  1UOU A;  2J0F A;  4GA4 A;  2DSJ A;  4ZTV A;  1AZY A;  5BO2 A;  3QR9 A;  1OTP A;  4X5B A;  4GA5 A;  4X46 A;  5BO3 A;  3H5Q A;  2ELC A;  4IJ1 A;  4LHM A;  4N93 A;  1O17 A;  4X5A A;  4MUO A;  4ZOK A;  5C2L A;  2BPQ A;  4N8Q A;  4XR5 A;  4GIU A;  4YI7 A;  4X59 A;  1ZVW A;  4EAF A;  4OWS A;  3QS8 A;  3R88 A;  1ZYK A;  3UU1 A;  4GKM A;  1GXB A;  4OWO A;  1V8G A;  1KGZ A;  4ZOF A;  4ZOJ A;  2TPT A;  4OWU A;  5BNE A;  5C7S A;  3GBR A;  3QQS A;  4OWN A;  4X5C A;  4X5E A;  2WK6 A;  4OWV A;  2GVQ A;  4YEK A;  4HKM A;  4M0R A;  4N5V A;  2WK5 A;  5BYT A;  4EAD A;  4X58 A;  1BRW A;  4YYY A;  3TWP A;  4OWM A;  4GTN A;  1ZXY A;  3QSA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...