5FANA

Crystal structure of pvhct in complex with p-coumaroyl-coa and protocatechuate
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
448
structure length
435
Chain Sequence
GHMKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRRRDGEGNDLAAADGSFFDGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAGGVLFQEADAPDATVDDFGDFAPTMELKRLIPTVEYTDDISAFPLLVVQVTHFKCGGVAIGVGMQHHVADGFSGLHFINSWADLCRGVPFAVMPYIDRSLLRARDPPTPVYPHVEYQPAPAMLSPPAAVAIFRLSRADLGRLRSQIPAREGVPRLSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLADAGTVTAGVAEGAAVIQAALDRMDEGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKFIYDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltrans
publication title Exploiting the Substrate Promiscuity of Hydroxycinnamoyl-CoA:Shikimate Hydroxycinnamoyl Transferase to Reduce Lignin.
pubmed doi rcsb
source organism Panicum virgatum
total genus 129
structure length 435
sequence length 448
ec nomenclature
pdb deposition date 2015-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5fanA02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5fanA01
1DPCA 4N72A 1XL7A 2JGPA 2II3A 5KJSA 5FANA 2I9DA 1C4TA 5DU9A 3FOTA 1XL8A 1L5AA 2E1TA 1DPBA 2RKVA 3L60A 5T3EA 5KJWA 3MAEA 2BGHA 1Q23A 2IHWA 3CLAA 3U9BA 1DPDA 2II4A 4G22A 3U9FA 5KJUA 1E2OA 4G0BA 4HVMA 1EAFA 1CLAA 5FALA 2E1UA 5DUAA 2VSQA 4KE4A 3FP0A 2II5A 4G2MA 4KECA 1EAEA 1XMDA 1SCZA 3B2SA 4JN3A 5KJTA 1Q9JA 1QCAA 1EADA 4JN5A 4CLAA 2XR7A 2ZBAA 1XMCA 2RKTA 5KJVA 1EABA 1EACA 1NOCB 2CLAA 3B30A 2XHGA 1CIAA 2E1VA 1EAAA 1PD5A
chains in the Genus database with same CATH superfamily
2RCUA 1XL7A 2JGPA 2II3A 2I9DA 1NDBA 1L5AA 2E1TA 2RKVA 3MAEA 3U9FA 4G0BA 2FY4A 4G2MA 1XMDA 1T7QA 2FY5A 2H3WA 4JN5A 2ZBAA 1XMCA 1CIAA 2E1VA 2XR7A 5FANA 1DPCA 4N72A 5KJSA 1T7NA 2FYOA 4EP9A 3L60A 1Q23A 2IHWA 1T1UA 1S5OA 4KE4A 4EYWA 1QCAA 4CLAA 2RKTA 1EACA 1NOCB 2CLAA 1Q6XA 4G22A 1C4TA 2BGHA 1DPDA 2II4A 5KJUA 4HVMA 5FALA 2E1UA 5DUAA 4KECA 2II5A 1SCZA 3B2SA 5KJTA 2DEBA 1T7OA 5KJVA 1NDIA 4EPHA 3FP0A 1EABA 1EAAA 1PD5A 1NDFA 5DU9A 3FOTA 1XL8A 2FY3A 1DPBA 5T3EA 5KJWA 3CLAA 3U9BA 1E2OA 2H3UA 2H3PA 1EAFA 1CLAA 2VSQA 1NM8A 1EAEA 2H4TA 4JN3A 2FW3A 1Q9JA 1EADA 3B30A 2XHGA 2FY2A
chains in the Genus database with same CATH topology
1DPCA 4N72A 1XL7A 2JGPA 2II3A 5KJSA 5FANA 2I9DA 1C4TA 5DU9A 3FOTA 1XL8A 1L5AA 2E1TA 1DPBA 2RKVA 3L60A 5T3EA 5KJWA 3MAEA 2BGHA 1Q23A 2IHWA 3CLAA 3U9BA 1DPDA 2II4A 4G22A 3U9FA 5KJUA 1E2OA 4G0BA 4HVMA 1EAFA 1CLAA 5FALA 2E1UA 5DUAA 2VSQA 4KE4A 3FP0A 2II5A 4G2MA 4KECA 1EAEA 1XMDA 1SCZA 3B2SA 4JN3A 5KJTA 1Q9JA 1QCAA 1EADA 4JN5A 4CLAA 2XR7A 2ZBAA 1XMCA 2RKTA 5KJVA 1EABA 1EACA 1NOCB 2CLAA 3B30A 2XHGA 1CIAA 2E1VA 1EAAA 1PD5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPC A;  4N72 A;  1XL7 A;  2JGP A;  2II3 A;  5KJS A;  5FAN A;  2I9D A;  1C4T A;  5DU9 A;  3FOT A;  1XL8 A;  1L5A A;  2E1T A;  1DPB A;  2RKV A;  3L60 A;  5T3E A;  5KJW A;  3MAE A;  2BGH A;  1Q23 A;  2IHW A;  3CLA A;  3U9B A;  1DPD A;  2II4 A;  4G22 A;  3U9F A;  5KJU A;  1E2O A;  4G0B A;  4HVM A;  1EAF A;  1CLA A;  5FAL A;  2E1U A;  5DUA A;  2VSQ A;  4KE4 A;  3FP0 A;  2II5 A;  4G2M A;  4KEC A;  1EAE A;  1XMD A;  1SCZ A;  3B2S A;  4JN3 A;  5KJT A;  1Q9J A;  1QCA A;  1EAD A;  4JN5 A;  4CLA A;  2XR7 A;  2ZBA A;  1XMC A;  2RKT A;  5KJV A;  1EAB A;  1EAC A;  1NOC B;  2CLA A;  3B30 A;  2XHG A;  1CIA A;  2E1V A;  1EAA A;  1PD5 A; 
#chains in the Genus database with same CATH topology
 2RCU A;  1XL7 A;  2JGP A;  2II3 A;  2I9D A;  1NDB A;  1L5A A;  2E1T A;  2RKV A;  3MAE A;  3U9F A;  4G0B A;  2FY4 A;  4G2M A;  1XMD A;  1T7Q A;  2FY5 A;  2H3W A;  4JN5 A;  2ZBA A;  1XMC A;  1CIA A;  2E1V A;  2XR7 A;  5FAN A;  1DPC A;  4N72 A;  5KJS A;  1T7N A;  2FYO A;  4EP9 A;  3L60 A;  1Q23 A;  2IHW A;  1T1U A;  1S5O A;  4KE4 A;  4EYW A;  1QCA A;  4CLA A;  2RKT A;  1EAC A;  1NOC B;  2CLA A;  1Q6X A;  4G22 A;  1C4T A;  2BGH A;  1DPD A;  2II4 A;  5KJU A;  4HVM A;  5FAL A;  2E1U A;  5DUA A;  4KEC A;  2II5 A;  1SCZ A;  3B2S A;  5KJT A;  2DEB A;  1T7O A;  5KJV A;  1NDI A;  4EPH A;  3FP0 A;  1EAB A;  1EAA A;  1PD5 A;  1NDF A;  5DU9 A;  3FOT A;  1XL8 A;  2FY3 A;  1DPB A;  5T3E A;  5KJW A;  3CLA A;  3U9B A;  1E2O A;  2H3U A;  2H3P A;  1EAF A;  1CLA A;  2VSQ A;  1NM8 A;  1EAE A;  2H4T A;  4JN3 A;  2FW3 A;  1Q9J A;  1EAD A;  3B30 A;  2XHG A;  2FY2 A; 
#chains in the Genus database with same CATH homology
 1DPC A;  4N72 A;  1XL7 A;  2JGP A;  2II3 A;  5KJS A;  5FAN A;  2I9D A;  1C4T A;  5DU9 A;  3FOT A;  1XL8 A;  1L5A A;  2E1T A;  1DPB A;  2RKV A;  3L60 A;  5T3E A;  5KJW A;  3MAE A;  2BGH A;  1Q23 A;  2IHW A;  3CLA A;  3U9B A;  1DPD A;  2II4 A;  4G22 A;  3U9F A;  5KJU A;  1E2O A;  4G0B A;  4HVM A;  1EAF A;  1CLA A;  5FAL A;  2E1U A;  5DUA A;  2VSQ A;  4KE4 A;  3FP0 A;  2II5 A;  4G2M A;  4KEC A;  1EAE A;  1XMD A;  1SCZ A;  3B2S A;  4JN3 A;  5KJT A;  1Q9J A;  1QCA A;  1EAD A;  4JN5 A;  4CLA A;  2XR7 A;  2ZBA A;  1XMC A;  2RKT A;  5KJV A;  1EAB A;  1EAC A;  1NOC B;  2CLA A;  3B30 A;  2XHG A;  1CIA A;  2E1V A;  1EAA A;  1PD5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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