5FBFA

S1 nuclease from aspergillus oryzae in complex with two molecules of 2'-deoxycytidine-5'-monophosphate
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
267
structure length
267
Chain Sequence
WGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTDAGEFSKPYHFIDAQDNPPQSCGVDYDRDCGSAGCSISAIQNYTNILLESPNGSEALNALKFVVHIIGDIHQPLHDENLEAGGNGIDVTYDGETTNLHHIWDTNMPEEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTVLDDGLAYINSTDLSGEYYDKSQPVFEELIAKAGYRLAAWLDLIASQPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Nuclease S1
publication title Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition.
pubmed doi rcsb
source organism Aspergillus oryzae rib40
total genus 106
structure length 267
sequence length 267
ec nomenclature ec 3.1.30.1: Aspergillus nuclease S(1).
pdb deposition date 2015-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02265 S1-P1_nuclease S1/P1 Nuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.575.10 Mainly Alpha Orthogonal Bundle P1 Nuclease P1 Nuclease 5fbfA00
1CA1A 1QM6A 3SNGA 1GYGA 5FBCA 1P5XA 5FBGA 4CWMA 1AK0A 1KHOA 1AH7A 1OLPA 4DJ4A 5FB9A 1P6EA 4CXPA 3W52A 2WXUA 2FFZA 5FBAA 5FBDA 1QMDA 2HUCA 5FBBA 5FBFA 2WY6A 2WXTA 4JDGA 1P6DA 4CXOA 4CXVA 2FGNA
chains in the Genus database with same CATH superfamily
1CA1A 1QM6A 3SNGA 1GYGA 5FBCA 1P5XA 5FBGA 4CWMA 1AK0A 1KHOA 1AH7A 1OLPA 4DJ4A 5FB9A 1P6EA 4CXPA 3W52A 2WXUA 2FFZA 5FBAA 5FBDA 1QMDA 2HUCA 5FBBA 5FBFA 2WY6A 2WXTA 4JDGA 1P6DA 4CXOA 4CXVA 2FGNA
chains in the Genus database with same CATH topology
1CA1A 1QM6A 3SNGA 1GYGA 5FBCA 1P5XA 5FBGA 4CWMA 1AK0A 1KHOA 1AH7A 1OLPA 4DJ4A 5FB9A 1P6EA 4CXPA 3W52A 2WXUA 2FFZA 5FBAA 5FBDA 1QMDA 2HUCA 5FBBA 5FBFA 2WY6A 2WXTA 4JDGA 1P6DA 4CXOA 4CXVA 2FGNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CA1 A;  1QM6 A;  3SNG A;  1GYG A;  5FBC A;  1P5X A;  5FBG A;  4CWM A;  1AK0 A;  1KHO A;  1AH7 A;  1OLP A;  4DJ4 A;  5FB9 A;  1P6E A;  4CXP A;  3W52 A;  2WXU A;  2FFZ A;  5FBA A;  5FBD A;  1QMD A;  2HUC A;  5FBB A;  5FBF A;  2WY6 A;  2WXT A;  4JDG A;  1P6D A;  4CXO A;  4CXV A;  2FGN A; 
#chains in the Genus database with same CATH topology
 1CA1 A;  1QM6 A;  3SNG A;  1GYG A;  5FBC A;  1P5X A;  5FBG A;  4CWM A;  1AK0 A;  1KHO A;  1AH7 A;  1OLP A;  4DJ4 A;  5FB9 A;  1P6E A;  4CXP A;  3W52 A;  2WXU A;  2FFZ A;  5FBA A;  5FBD A;  1QMD A;  2HUC A;  5FBB A;  5FBF A;  2WY6 A;  2WXT A;  4JDG A;  1P6D A;  4CXO A;  4CXV A;  2FGN A; 
#chains in the Genus database with same CATH homology
 1CA1 A;  1QM6 A;  3SNG A;  1GYG A;  5FBC A;  1P5X A;  5FBG A;  4CWM A;  1AK0 A;  1KHO A;  1AH7 A;  1OLP A;  4DJ4 A;  5FB9 A;  1P6E A;  4CXP A;  3W52 A;  2WXU A;  2FFZ A;  5FBA A;  5FBD A;  1QMD A;  2HUC A;  5FBB A;  5FBF A;  2WY6 A;  2WXT A;  4JDG A;  1P6D A;  4CXO A;  4CXV A;  2FGN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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