5FDDA

Endonuclease inhibitor 1 bound to influenza strain h1n1 polymerase acidic subunit n-terminal region at ph 7.0
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
181
structure length
181
Chain Sequence
GPLGSMEDFVRQCFNPMIVELAEKTMKEYGEDLKIETNKFAAICTHLEVCFMYSDASKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Polymerase acidic protein,Polymerase acidic protein
publication title Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
pubmed doi rcsb
source organism Influenza a virus
total genus 70
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 2015-12-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 5fddA00
3HW3A 5I13A 5CGVA 4CGXA 4AWMA 5DBSA 5DESA 4E5GA 4CHCA 5D2OA 4AWGA 4ZI0A 3HW5A 4E5FA 4E5IA 3HW4A 5JHVA 3HW6A 4E5HA 5FDGA 4AWKA 4ZHZA 4AVQA 5EGAA 4ZQQA 5JHTA 5CCYA 4E5EA 5D4GA 3EBJA 4AWHA 4NFZA 5CL0A 5D8UA 5CZNA 4AVLA 4CGSA 5D9JA 4AWFA 5FDDA 4E5JA 5D42A 4E5LA 4YYLA 5DEBA 4AVGA
chains in the Genus database with same CATH superfamily
3HW3A 4CGXA 3WVKA 5DBSA 5D2OA 4AWGA 1M0DA 4E5IA 3HW4A 4F0QA 3HW6A 5FDGA 4AWKA 4AVQA 2XI7A 5EGAA 5JHTA 3DW9A 3WVGA 5CZNA 4AVLA 5D42A 3A4KA 2BAMA 1SDOA 1DFMA 5DESA 4E5GA 4CHCA 4E5FA 4OC8A 5JHVA 4E5HA 2P14A 2GB7A 4E5EA 3WVPA 4R28A 3V1ZA 3V20A 5D9JA 2PFJA 4E5JA 5DEBA 3WVIA 2E52A 3V21A 4ZI0A 1KNVA 3HW5A 1FZRA 4ZQQA 4AWHA 1BHMA 4NFZA 5CL0A 5D8UA 3DPGA 1ES8A 4CGSA 1FOKA 1D2IA 3WVHA 3CAEA 3BAMA 2XI5A 4E5LA 3N7BA 3MQYA 1DC1A 3ODHA 5I13A 5CGVA 4AWMA 2EWFA 3N78A 1BAMA 1M0IA 1CFRA 4F0PA 4ZHZA 2FQZA 5CCYA 2FOKA 5D4GA 3EBJA 2P0JA 1VRRA 3DVOA 3MQ6A 4AWFA 1ESGA 5FDDA 3BM3A 4YYLA 4AVGA
chains in the Genus database with same CATH topology
3HW3A 4CGXA 3WVKA 5DBSA 5D2OA 4AWGA 1M0DA 4E5IA 3HW4A 4F0QA 3HW6A 5FDGA 4AWKA 4AVQA 2XI7A 5EGAA 5JHTA 3DW9A 3WVGA 5CZNA 4AVLA 5D42A 3A4KA 2BAMA 1SDOA 1DFMA 5DESA 4E5GA 4CHCA 4E5FA 4OC8A 5JHVA 4E5HA 2P14A 2GB7A 4E5EA 3WVPA 4R28A 3V1ZA 3V20A 5D9JA 2PFJA 4E5JA 5DEBA 3WVIA 2E52A 3V21A 4ZI0A 1KNVA 3HW5A 1FZRA 4ZQQA 4AWHA 1BHMA 4NFZA 5CL0A 5D8UA 3DPGA 1ES8A 4CGSA 1FOKA 1D2IA 3WVHA 3CAEA 3BAMA 2XI5A 4E5LA 3N7BA 3MQYA 1DC1A 3ODHA 5I13A 5CGVA 4AWMA 2EWFA 3N78A 1BAMA 1M0IA 1CFRA 4F0PA 4ZHZA 2FQZA 5CCYA 2FOKA 5D4GA 3EBJA 2P0JA 1VRRA 3DVOA 3MQ6A 4AWFA 1ESGA 5FDDA 3BM3A 4YYLA 4AVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HW3 A;  5I13 A;  5CGV A;  4CGX A;  4AWM A;  5DBS A;  5DES A;  4E5G A;  4CHC A;  5D2O A;  4AWG A;  4ZI0 A;  3HW5 A;  4E5F A;  4E5I A;  3HW4 A;  5JHV A;  3HW6 A;  4E5H A;  5FDG A;  4AWK A;  4ZHZ A;  4AVQ A;  5EGA A;  4ZQQ A;  5JHT A;  5CCY A;  4E5E A;  5D4G A;  3EBJ A;  4AWH A;  4NFZ A;  5CL0 A;  5D8U A;  5CZN A;  4AVL A;  4CGS A;  5D9J A;  4AWF A;  5FDD A;  4E5J A;  5D42 A;  4E5L A;  4YYL A;  5DEB A;  4AVG A; 
#chains in the Genus database with same CATH topology
 3HW3 A;  4CGX A;  3WVK A;  5DBS A;  5D2O A;  4AWG A;  1M0D A;  4E5I A;  3HW4 A;  4F0Q A;  3HW6 A;  5FDG A;  4AWK A;  4AVQ A;  2XI7 A;  5EGA A;  5JHT A;  3DW9 A;  3WVG A;  5CZN A;  4AVL A;  5D42 A;  3A4K A;  2BAM A;  1SDO A;  1DFM A;  5DES A;  4E5G A;  4CHC A;  4E5F A;  4OC8 A;  5JHV A;  4E5H A;  2P14 A;  2GB7 A;  4E5E A;  3WVP A;  4R28 A;  3V1Z A;  3V20 A;  5D9J A;  2PFJ A;  4E5J A;  5DEB A;  3WVI A;  2E52 A;  3V21 A;  4ZI0 A;  1KNV A;  3HW5 A;  1FZR A;  4ZQQ A;  4AWH A;  1BHM A;  4NFZ A;  5CL0 A;  5D8U A;  3DPG A;  1ES8 A;  4CGS A;  1FOK A;  1D2I A;  3WVH A;  3CAE A;  3BAM A;  2XI5 A;  4E5L A;  3N7B A;  3MQY A;  1DC1 A;  3ODH A;  5I13 A;  5CGV A;  4AWM A;  2EWF A;  3N78 A;  1BAM A;  1M0I A;  1CFR A;  4F0P A;  4ZHZ A;  2FQZ A;  5CCY A;  2FOK A;  5D4G A;  3EBJ A;  2P0J A;  1VRR A;  3DVO A;  3MQ6 A;  4AWF A;  1ESG A;  5FDD A;  3BM3 A;  4YYL A;  4AVG A; 
#chains in the Genus database with same CATH homology
 3HW3 A;  4CGX A;  3WVK A;  5DBS A;  5D2O A;  4AWG A;  1M0D A;  4E5I A;  3HW4 A;  4F0Q A;  3HW6 A;  5FDG A;  4AWK A;  4AVQ A;  2XI7 A;  5EGA A;  5JHT A;  3DW9 A;  3WVG A;  5CZN A;  4AVL A;  5D42 A;  3A4K A;  2BAM A;  1SDO A;  1DFM A;  5DES A;  4E5G A;  4CHC A;  4E5F A;  4OC8 A;  5JHV A;  4E5H A;  2P14 A;  2GB7 A;  4E5E A;  3WVP A;  4R28 A;  3V1Z A;  3V20 A;  5D9J A;  2PFJ A;  4E5J A;  5DEB A;  3WVI A;  2E52 A;  3V21 A;  4ZI0 A;  1KNV A;  3HW5 A;  1FZR A;  4ZQQ A;  4AWH A;  1BHM A;  4NFZ A;  5CL0 A;  5D8U A;  3DPG A;  1ES8 A;  4CGS A;  1FOK A;  1D2I A;  3WVH A;  3CAE A;  3BAM A;  2XI5 A;  4E5L A;  3N7B A;  3MQY A;  1DC1 A;  3ODH A;  5I13 A;  5CGV A;  4AWM A;  2EWF A;  3N78 A;  1BAM A;  1M0I A;  1CFR A;  4F0P A;  4ZHZ A;  2FQZ A;  5CCY A;  2FOK A;  5D4G A;  3EBJ A;  2P0J A;  1VRR A;  3DVO A;  3MQ6 A;  4AWF A;  1ESG A;  5FDD A;  3BM3 A;  4YYL A;  4AVG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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