5FDGA

Endonuclease inhibitor 3 bound to influenza strain h1n1 polymerase acidic subunit n-terminal region at ph 7.0
Total Genus 69
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
181
structure length
181
Chain Sequence
GPLGSMEDFVRQCFNPMIVELAEKTMKEYGEDLKIETNKFAAICTHLEVCFMYSDASKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase/hydrolase inhibitor
source organism Influenza a virus
publication title Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
pubmed doi rcsb
molecule keywords Polymerase acidic protein
total genus 69
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 2015-12-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 5fdgA00
5CL0A 4E5LA 5DBSA 4AWKA 5CGVA 5EGAA 4AWFA 4AWHA 5DEBA 4AWMA 4E5FA 5DESA 4AWGA 5D2OA 4ZI0A 4AVLA 3EBJA 4NFZA 3HW3A 5JHVA 4E5JA 4E5IA 3HW6A 4E5EA 5D9JA 5CZNA 5D42A 5JHTA 5CCYA 4CGXA 4AVGA 4AVQA 4ZQQA 4CGSA 4YYLA 5FDGA 4E5GA 4E5HA 3HW4A 5D4GA 5I13A 5D8UA 4CHCA 3HW5A 4ZHZA 5FDDA
chains in the Genus database with same CATH superfamily
3CAEA 4F0QA 3V21A 4AWFA 4AWMA 5DESA 4AWGA 5D2OA 3N7BA 4AVLA 3EBJA 3WVHA 3HW3A 4E5IA 1SDOA 2GB7A 5FDGA 1ES8A 3HW4A 1FOKA 1DC1A 2XI5A 3WVIA 5CL0A 4E5LA 5DEBA 4E5FA 3WVPA 3WVKA 1M0DA 4ZI0A 1D2IA 5JHVA 4E5JA 1BAMA 4AVQA 4CGSA 1VRRA 4R28A 4OC8A 4E5GA 5D8UA 4CHCA 2XI7A 3N78A 3MQ6A 2E52A 2P14A 1BHMA 1M0IA 5DBSA 5CGVA 5EGAA 3DVOA 2FQZA 3WVGA 2P0JA 4NFZA 3HW6A 2PFJA 5D42A 3ODHA 3A4KA 5CCYA 4ZQQA 4E5HA 1KNVA 2BAMA 3HW5A 3V20A 2FOKA 3DW9A 4AWKA 4AWHA 1CFRA 3MQYA 3BAMA 3V1ZA 4F0PA 4E5EA 5D9JA 5CZNA 5JHTA 4CGXA 1DFMA 4AVGA 4YYLA 1ESGA 1FZRA 2EWFA 3BM3A 5D4GA 5I13A 3DPGA 4ZHZA 5FDDA
chains in the Genus database with same CATH topology
3CAEA 4F0QA 3V21A 4AWFA 4AWMA 5DESA 4AWGA 5D2OA 3N7BA 4AVLA 3EBJA 3WVHA 3HW3A 4E5IA 1SDOA 2GB7A 5FDGA 1ES8A 3HW4A 1FOKA 1DC1A 2XI5A 3WVIA 5CL0A 4E5LA 5DEBA 4E5FA 3WVPA 3WVKA 1M0DA 4ZI0A 1D2IA 5JHVA 4E5JA 1BAMA 4AVQA 4CGSA 1VRRA 4R28A 4OC8A 4E5GA 5D8UA 4CHCA 2XI7A 3N78A 3MQ6A 2E52A 2P14A 1BHMA 1M0IA 5DBSA 5CGVA 5EGAA 3DVOA 2FQZA 3WVGA 2P0JA 4NFZA 3HW6A 2PFJA 5D42A 3ODHA 3A4KA 5CCYA 4ZQQA 4E5HA 1KNVA 2BAMA 3HW5A 3V20A 2FOKA 3DW9A 4AWKA 4AWHA 1CFRA 3MQYA 3BAMA 3V1ZA 4F0PA 4E5EA 5D9JA 5CZNA 5JHTA 4CGXA 1DFMA 4AVGA 4YYLA 1ESGA 1FZRA 2EWFA 3BM3A 5D4GA 5I13A 3DPGA 4ZHZA 5FDDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CL0 A;  4E5L A;  5DBS A;  4AWK A;  5CGV A;  5EGA A;  4AWF A;  4AWH A;  5DEB A;  4AWM A;  4E5F A;  5DES A;  4AWG A;  5D2O A;  4ZI0 A;  4AVL A;  3EBJ A;  4NFZ A;  3HW3 A;  5JHV A;  4E5J A;  4E5I A;  3HW6 A;  4E5E A;  5D9J A;  5CZN A;  5D42 A;  5JHT A;  5CCY A;  4CGX A;  4AVG A;  4AVQ A;  4ZQQ A;  4CGS A;  4YYL A;  5FDG A;  4E5G A;  4E5H A;  3HW4 A;  5D4G A;  5I13 A;  5D8U A;  4CHC A;  3HW5 A;  4ZHZ A;  5FDD A; 
#chains in the Genus database with same CATH topology
 3CAE A;  4F0Q A;  3V21 A;  4AWF A;  4AWM A;  5DES A;  4AWG A;  5D2O A;  3N7B A;  4AVL A;  3EBJ A;  3WVH A;  3HW3 A;  4E5I A;  1SDO A;  2GB7 A;  5FDG A;  1ES8 A;  3HW4 A;  1FOK A;  1DC1 A;  2XI5 A;  3WVI A;  5CL0 A;  4E5L A;  5DEB A;  4E5F A;  3WVP A;  3WVK A;  1M0D A;  4ZI0 A;  1D2I A;  5JHV A;  4E5J A;  1BAM A;  4AVQ A;  4CGS A;  1VRR A;  4R28 A;  4OC8 A;  4E5G A;  5D8U A;  4CHC A;  2XI7 A;  3N78 A;  3MQ6 A;  2E52 A;  2P14 A;  1BHM A;  1M0I A;  5DBS A;  5CGV A;  5EGA A;  3DVO A;  2FQZ A;  3WVG A;  2P0J A;  4NFZ A;  3HW6 A;  2PFJ A;  5D42 A;  3ODH A;  3A4K A;  5CCY A;  4ZQQ A;  4E5H A;  1KNV A;  2BAM A;  3HW5 A;  3V20 A;  2FOK A;  3DW9 A;  4AWK A;  4AWH A;  1CFR A;  3MQY A;  3BAM A;  3V1Z A;  4F0P A;  4E5E A;  5D9J A;  5CZN A;  5JHT A;  4CGX A;  1DFM A;  4AVG A;  4YYL A;  1ESG A;  1FZR A;  2EWF A;  3BM3 A;  5D4G A;  5I13 A;  3DPG A;  4ZHZ A;  5FDD A; 
#chains in the Genus database with same CATH homology
 3CAE A;  4F0Q A;  3V21 A;  4AWF A;  4AWM A;  5DES A;  4AWG A;  5D2O A;  3N7B A;  4AVL A;  3EBJ A;  3WVH A;  3HW3 A;  4E5I A;  1SDO A;  2GB7 A;  5FDG A;  1ES8 A;  3HW4 A;  1FOK A;  1DC1 A;  2XI5 A;  3WVI A;  5CL0 A;  4E5L A;  5DEB A;  4E5F A;  3WVP A;  3WVK A;  1M0D A;  4ZI0 A;  1D2I A;  5JHV A;  4E5J A;  1BAM A;  4AVQ A;  4CGS A;  1VRR A;  4R28 A;  4OC8 A;  4E5G A;  5D8U A;  4CHC A;  2XI7 A;  3N78 A;  3MQ6 A;  2E52 A;  2P14 A;  1BHM A;  1M0I A;  5DBS A;  5CGV A;  5EGA A;  3DVO A;  2FQZ A;  3WVG A;  2P0J A;  4NFZ A;  3HW6 A;  2PFJ A;  5D42 A;  3ODH A;  3A4K A;  5CCY A;  4ZQQ A;  4E5H A;  1KNV A;  2BAM A;  3HW5 A;  3V20 A;  2FOK A;  3DW9 A;  4AWK A;  4AWH A;  1CFR A;  3MQY A;  3BAM A;  3V1Z A;  4F0P A;  4E5E A;  5D9J A;  5CZN A;  5JHT A;  4CGX A;  1DFM A;  4AVG A;  4YYL A;  1ESG A;  1FZR A;  2EWF A;  3BM3 A;  5D4G A;  5I13 A;  3DPG A;  4ZHZ A;  5FDD A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...