5FJ8F

Cryo-em structure of yeast rna polymerase iii elongation complex at 3. 9 a
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
83
structure length
83
Chain Sequence
EKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1
publication title Molecular Structures of Unbound and Transcribing RNA Polymerase III.
pubmed doi rcsb
total genus 17
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2015-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 5fj8F00
1I3QF 4G7ZE 1Y1WF 2JA5F 4BBRF 1HQME 4YFKE 3HOVF 5C3EF 3GTKF 4OIQE 1QKLA 3HOYF 1TWAF 5FJ8F 2JA7F 4KN4E 4A3FF 1SMYE 5IYCF 4XLNE 3PO2F 4KN7E 4A3IF 3S2HF 3CQZF 2A68E 1TWFF 4Y7NF 2Y0SI 4LK1E 1K83F 4A3GF 2CW0E 3EQLE 5IP9F 4A3KF 4BXXF 3GTQF 2E2IF 4A93F 2PMZK 4Q4ZE 3S16F 5M5YF 4A3JF 4LLGE 4A3CF 5IYDF 1SFOF 4OIRE 2WAQK 3WODE 2R7ZF 4KMUE 2NVQF 5BYHE 2JA6F 4BY1F 4XLPE 3S1NF 5D4CE 4BY7F 4XSXE 2A6HE 4A3MF 3GTMF 2JA8F 3S1MF 4YG2E 5M5WF 2O5IE 5TMFE 4OIPE 4A3DF 4X6AF 3S17F 2B63F 4C2MF 3HKZK 2NVXF 4YFXE 5D4EE 3GTJF 5M3FF 3H0GF 4BBSF 3S2DF 1YNNK 1I50F 4GZYE 3GTLF 4A3LF 5D4DE 2A6EE 2BE5E 1IW7E 1YNJK 3S1QF 4G7HE 2PPBE 3PO3F 2O5JE 1Y1VF 3S15F 5IP7F 4A3EF 3S1RF 2NVTF 3K7AF 4XSZE 3HOWF 1TWGF 5C4JF 4G7OE 3H3VG 3GTPF 4Q5SE 2A69E 5FLMF 4MEYE 4YFNE 3RZDF 1TWHF 5C44F 5M5XF 3FKIF 1WCMF 4C3JF 4OIOE 1ZYRE 5IYBF 5E17E 2WB1I 4MQ9E 2NVYF 1I6VE 4LJZE 3RZOF 2R93F 4LK0E 3HOXF 1R9TF 3I4MF 5E18E 3S14F 1TWCF 4Y52F 3M4OF 2VUMF 3GTOF 4ZH4E 4C3HF 2E2HF 4AYBK 4MEXE 3M3YF 4A3BF 3I4NF 2YU9F 3HOUF 4OINE 3DXJE 1I6HF 5C4XF 2R92F 4C3IF 3GTGF 5TMCE 5IPLE 3HOZF 4JK1E 5M3MF 2E2JF
chains in the Genus database with same CATH superfamily
1I3QF 4G7ZE 1Y1WF 1K83E 3HOUE 2JA5F 1I6HE 4A3GE 4BBRF 5IP9E 1HQME 4YFKE 3HOVF 5C3EF 4A3KE 4OIQE 3GTKF 1QKLA 3HOYF 5M3ME 1TWAF 5FJ8F 2E2IE 4A93E 2JA7F 4KN4E 4A3FF 3S16E 1SMYE 5M5YE 5IYCF 4XLNE 4A3JE 1SFOE 4KN7E 4A3IF 3S2HF 3CQZF 2A68E 3PO2F 2JA5E 1TWFF 2R7ZE 4Y7NF 4AYBH 2Y0SI 5C3EE 3HOYE 4LK1E 1K83F 1TWAE 2JA6E 4BY1E 3S1NE 4A3GF 2CW0E 3EQLE 4QIWK 5IP9F 4A3IE 4A3KF 3CQZE 4BXXF 4BY7E 4A3ME 3GTQF 2E2IF 4A93F 4Y7NE 2PMZK 4Q4ZE 3S16F 5M5YF 4A3JF 4LLGE 4A3CF 5IYDF 1SFOF 4OIRE 4A3DE 2WAQK 3WODE 4C2ME 2R7ZF 4KMUE 2NVXE 3GTJE 2NVQF 4BXXE 3H0GE 4BBSE 5BYHE 2JA6F 3GTQE 4BY1F 3S2DE 4XLPE 3S1NF 1I50E 5D4CE 5IYDE 3GTLE 4A3LE 4BY7F 4XSXE 2A6HE 2Y0SH 4A3MF 3GTMF 2JA8F 3S1MF 3S1QE 4YG2E 3PO3E 2NVQE 1DZFA 1Y1VE 5TMFE 4OIPE 5M5WF 2O5IE 5IP7E 4A3EE 4QIWH 3S17F 4A3DF 2B63F 4C2MF 3HKZK 2NVXF 3K7AE 4YFXE 3HOWE 5D4EE 1TWGE 3GTJF 5M3FF 3H0GF 4BBSF 3S2DF 3GTPE 2PMZH 1YNNK 2JA8E 3GTME 1I50F 3H3VF 3S1ME 4GZYE 3GTLF 5M5WE 4A3LF 4X6AE 5D4DE 3RZDE 2A6EE 2WAQH 5C44E 3S17E 2B63E 5M5XE 2BE5E 1IW7E 1WCME 1YNJK 3FKIE 4C3JE 4G7HE 5IYBE 2PPBE 3PO3F 3S1QF 5M3FE 2O5JE 1Y1VF 3S15F 5IP7F 4A3EF 3S1RF 2NVYE 2NVTF 3K7AF 4XSZE 3HOWF 3RZOE 2R93E 1EIKA 1TWGF 5C4JF 3HOXE 4G7OE 3H3VG 3GTPF 1R9TE 4Q5SE 3I4ME 2A69E 5FLMF 3S14E 1TWCE 4MEYE 4YFNE 4Y52E 3RZDF 3M4OE 1TWHF 3S15E 5C44F 3HKZH 3GTOE 5M5XF 3S1RE 1WCMF 3FKIF 4C3JF 2E2HE 4OIOE 2NVTE 1ZYRE 5IYBF 3M3YE 3I4NE 4A3BE 2YU9E 5C4JE 2WB1I 5E17E 5C4XE 2R92E 4MQ9E 4C3IE 5FLME 2NVYF 3GTGE 1I6VE 4LJZE 3RZOF 2R93F 3HOZE 4LK0E 1TWHE 4A3CE 3HOXF 2E2JE 4X6AF 1R9TF 3I4MF 5E18E 1I3QE 1Y1WE 3S14F 1TWCF 4Y52F 3M4OF 2VUMF 3GTOF 4ZH4E 4BBRE 4C3HF 2E2HF 3HOVE 4AYBK 4MEXE 3GTKE 3M3YF 4A3BF 3I4NF 2YU9F 5FJ8E 3HOUF 4OINE 3DXJE 1I6HF 2JA7E 5C4XF 4A3FE 2R92F 4C3IF 3GTGF 5IYCE 3PO2E 3S2HE 5TMCE 5IPLE 3HOZF 4JK1E 5M3MF 2KRXA 2VUME 1TWFE 2E2JF 2WB1H 4C3HE
chains in the Genus database with same CATH topology
1I3QF 4G7ZE 1Y1WF 2JA5F 4BBRF 1HQME 4YFKE 3HOVF 5C3EF 3GTKF 4OIQE 1QKLA 3HOYF 1TWAF 5FJ8F 2JA7F 4KN4E 4A3FF 1SMYE 5IYCF 4XLNE 3PO2F 4KN7E 4A3IF 3S2HF 3CQZF 2A68E 1TWFF 4Y7NF 2Y0SI 4LK1E 1K83F 4A3GF 2CW0E 3EQLE 4QIWK 5IP9F 4A3KF 4BXXF 3GTQF 2E2IF 4A93F 2PMZK 4Q4ZE 3S16F 5M5YF 4A3JF 4LLGE 4A3CF 5IYDF 1SFOF 4OIRE 2WAQK 3WODE 2R7ZF 4KMUE 2NVQF 5BYHE 2JA6F 4BY1F 4XLPE 3S1NF 5D4CE 4BY7F 4XSXE 2A6HE 4A3MF 3GTMF 2JA8F 3S1MF 4YG2E 5M5WF 2O5IE 5TMFE 4OIPE 4A3DF 4X6AF 3S17F 2B63F 4C2MF 3HKZK 2NVXF 4YFXE 5D4EE 3GTJF 5M3FF 3H0GF 4BBSF 3S2DF 1YNNK 1I50F 4GZYE 3GTLF 4A3LF 5D4DE 2A6EE 2BE5E 1IW7E 1YNJK 3S1QF 4G7HE 2PPBE 3PO3F 2O5JE 1Y1VF 3S15F 5IP7F 4A3EF 3S1RF 2NVTF 3K7AF 4XSZE 3HOWF 1TWGF 5C4JF 4G7OE 3H3VG 3GTPF 4Q5SE 2A69E 5FLMF 4MEYE 4YFNE 3RZDF 1TWHF 5C44F 5M5XF 3FKIF 1WCMF 4C3JF 4OIOE 1ZYRE 5IYBF 5E17E 2WB1I 4MQ9E 2NVYF 1I6VE 4LJZE 3RZOF 2R93F 4LK0E 3HOXF 1R9TF 3I4MF 5E18E 3S14F 1TWCF 4Y52F 3M4OF 2VUMF 3GTOF 4ZH4E 4C3HF 2E2HF 4AYBK 4MEXE 3M3YF 4A3BF 3I4NF 2YU9F 3HOUF 4OINE 3DXJE 1I6HF 5C4XF 2R92F 4C3IF 3GTGF 5TMCE 5IPLE 3HOZF 4JK1E 5M3MF 2KRXA 2E2JF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I3Q F;  4G7Z E;  1Y1W F;  2JA5 F;  4BBR F;  1HQM E;  4YFK E;  3HOV F;  5C3E F;  3GTK F;  4OIQ E;  1QKL A;  3HOY F;  1TWA F;  5FJ8 F;  2JA7 F;  4KN4 E;  4A3F F;  1SMY E;  5IYC F;  4XLN E;  3PO2 F;  4KN7 E;  4A3I F;  3S2H F;  3CQZ F;  2A68 E;  1TWF F;  4Y7N F;  2Y0S I;  4LK1 E;  1K83 F;  4A3G F;  2CW0 E;  3EQL E;  5IP9 F;  4A3K F;  4BXX F;  3GTQ F;  2E2I F;  4A93 F;  2PMZ K;  4Q4Z E;  3S16 F;  5M5Y F;  4A3J F;  4LLG E;  4A3C F;  5IYD F;  1SFO F;  4OIR E;  2WAQ K;  3WOD E;  2R7Z F;  4KMU E;  2NVQ F;  5BYH E;  2JA6 F;  4BY1 F;  4XLP E;  3S1N F;  5D4C E;  4BY7 F;  4XSX E;  2A6H E;  4A3M F;  3GTM F;  2JA8 F;  3S1M F;  4YG2 E;  5M5W F;  2O5I E;  5TMF E;  4OIP E;  4A3D F;  4X6A F;  3S17 F;  2B63 F;  4C2M F;  3HKZ K;  2NVX F;  4YFX E;  5D4E E;  3GTJ F;  5M3F F;  3H0G F;  4BBS F;  3S2D F;  1YNN K;  1I50 F;  4GZY E;  3GTL F;  4A3L F;  5D4D E;  2A6E E;  2BE5 E;  1IW7 E;  1YNJ K;  3S1Q F;  4G7H E;  2PPB E;  3PO3 F;  2O5J E;  1Y1V F;  3S15 F;  5IP7 F;  4A3E F;  3S1R F;  2NVT F;  3K7A F;  4XSZ E;  3HOW F;  1TWG F;  5C4J F;  4G7O E;  3H3V G;  3GTP F;  4Q5S E;  2A69 E;  5FLM F;  4MEY E;  4YFN E;  3RZD F;  1TWH F;  5C44 F;  5M5X F;  3FKI F;  1WCM F;  4C3J F;  4OIO E;  1ZYR E;  5IYB F;  5E17 E;  2WB1 I;  4MQ9 E;  2NVY F;  1I6V E;  4LJZ E;  3RZO F;  2R93 F;  4LK0 E;  3HOX F;  1R9T F;  3I4M F;  5E18 E;  3S14 F;  1TWC F;  4Y52 F;  3M4O F;  2VUM F;  3GTO F;  4ZH4 E;  4C3H F;  2E2H F;  4AYB K;  4MEX E;  3M3Y F;  4A3B F;  3I4N F;  2YU9 F;  3HOU F;  4OIN E;  3DXJ E;  1I6H F;  5C4X F;  2R92 F;  4C3I F;  3GTG F;  5TMC E;  5IPL E;  3HOZ F;  4JK1 E;  5M3M F;  2E2J F; 
#chains in the Genus database with same CATH topology
 1I3Q F;  4G7Z E;  1Y1W F;  1K83 E;  3HOU E;  2JA5 F;  1I6H E;  4A3G E;  4BBR F;  5IP9 E;  1HQM E;  4YFK E;  3HOV F;  5C3E F;  4A3K E;  4OIQ E;  3GTK F;  1QKL A;  3HOY F;  5M3M E;  1TWA F;  5FJ8 F;  2E2I E;  4A93 E;  2JA7 F;  4KN4 E;  4A3F F;  3S16 E;  1SMY E;  5M5Y E;  5IYC F;  4XLN E;  4A3J E;  1SFO E;  4KN7 E;  4A3I F;  3S2H F;  3CQZ F;  2A68 E;  3PO2 F;  2JA5 E;  1TWF F;  2R7Z E;  4Y7N F;  4AYB H;  2Y0S I;  5C3E E;  3HOY E;  4LK1 E;  1K83 F;  1TWA E;  2JA6 E;  4BY1 E;  3S1N E;  4A3G F;  2CW0 E;  3EQL E;  4QIW K;  5IP9 F;  4A3I E;  4A3K F;  3CQZ E;  4BXX F;  4BY7 E;  4A3M E;  3GTQ F;  2E2I F;  4A93 F;  4Y7N E;  2PMZ K;  4Q4Z E;  3S16 F;  5M5Y F;  4A3J F;  4LLG E;  4A3C F;  5IYD F;  1SFO F;  4OIR E;  4A3D E;  2WAQ K;  3WOD E;  4C2M E;  2R7Z F;  4KMU E;  2NVX E;  3GTJ E;  2NVQ F;  4BXX E;  3H0G E;  4BBS E;  5BYH E;  2JA6 F;  3GTQ E;  4BY1 F;  3S2D E;  4XLP E;  3S1N F;  1I50 E;  5D4C E;  5IYD E;  3GTL E;  4A3L E;  4BY7 F;  4XSX E;  2A6H E;  2Y0S H;  4A3M F;  3GTM F;  2JA8 F;  3S1M F;  3S1Q E;  4YG2 E;  3PO3 E;  2NVQ E;  1DZF A;  1Y1V E;  5TMF E;  4OIP E;  5M5W F;  2O5I E;  5IP7 E;  4A3E E;  4QIW H;  3S17 F;  4A3D F;  2B63 F;  4C2M F;  3HKZ K;  2NVX F;  3K7A E;  4YFX E;  3HOW E;  5D4E E;  1TWG E;  3GTJ F;  5M3F F;  3H0G F;  4BBS F;  3S2D F;  3GTP E;  2PMZ H;  1YNN K;  2JA8 E;  3GTM E;  1I50 F;  3H3V F;  3S1M E;  4GZY E;  3GTL F;  5M5W E;  4A3L F;  4X6A E;  5D4D E;  3RZD E;  2A6E E;  2WAQ H;  5C44 E;  3S17 E;  2B63 E;  5M5X E;  2BE5 E;  1IW7 E;  1WCM E;  1YNJ K;  3FKI E;  4C3J E;  4G7H E;  5IYB E;  2PPB E;  3PO3 F;  3S1Q F;  5M3F E;  2O5J E;  1Y1V F;  3S15 F;  5IP7 F;  4A3E F;  3S1R F;  2NVY E;  2NVT F;  3K7A F;  4XSZ E;  3HOW F;  3RZO E;  2R93 E;  1EIK A;  1TWG F;  5C4J F;  3HOX E;  4G7O E;  3H3V G;  3GTP F;  1R9T E;  4Q5S E;  3I4M E;  2A69 E;  5FLM F;  3S14 E;  1TWC E;  4MEY E;  4YFN E;  4Y52 E;  3RZD F;  3M4O E;  1TWH F;  3S15 E;  5C44 F;  3HKZ H;  3GTO E;  5M5X F;  3S1R E;  1WCM F;  3FKI F;  4C3J F;  2E2H E;  4OIO E;  2NVT E;  1ZYR E;  5IYB F;  3M3Y E;  3I4N E;  4A3B E;  2YU9 E;  5C4J E;  2WB1 I;  5E17 E;  5C4X E;  2R92 E;  4MQ9 E;  4C3I E;  5FLM E;  2NVY F;  3GTG E;  1I6V E;  4LJZ E;  3RZO F;  2R93 F;  3HOZ E;  4LK0 E;  1TWH E;  4A3C E;  3HOX F;  2E2J E;  4X6A F;  1R9T F;  3I4M F;  5E18 E;  1I3Q E;  1Y1W E;  3S14 F;  1TWC F;  4Y52 F;  3M4O F;  2VUM F;  3GTO F;  4ZH4 E;  4BBR E;  4C3H F;  2E2H F;  3HOV E;  4AYB K;  4MEX E;  3GTK E;  3M3Y F;  4A3B F;  3I4N F;  2YU9 F;  5FJ8 E;  3HOU F;  4OIN E;  3DXJ E;  1I6H F;  2JA7 E;  5C4X F;  4A3F E;  2R92 F;  4C3I F;  3GTG F;  5IYC E;  3PO2 E;  3S2H E;  5TMC E;  5IPL E;  3HOZ F;  4JK1 E;  5M3M F;  2KRX A;  2VUM E;  1TWF E;  2E2J F;  2WB1 H;  4C3H E; 
#chains in the Genus database with same CATH homology
 1I3Q F;  4G7Z E;  1Y1W F;  2JA5 F;  4BBR F;  1HQM E;  4YFK E;  3HOV F;  5C3E F;  3GTK F;  4OIQ E;  1QKL A;  3HOY F;  1TWA F;  5FJ8 F;  2JA7 F;  4KN4 E;  4A3F F;  1SMY E;  5IYC F;  4XLN E;  3PO2 F;  4KN7 E;  4A3I F;  3S2H F;  3CQZ F;  2A68 E;  1TWF F;  4Y7N F;  2Y0S I;  4LK1 E;  1K83 F;  4A3G F;  2CW0 E;  3EQL E;  4QIW K;  5IP9 F;  4A3K F;  4BXX F;  3GTQ F;  2E2I F;  4A93 F;  2PMZ K;  4Q4Z E;  3S16 F;  5M5Y F;  4A3J F;  4LLG E;  4A3C F;  5IYD F;  1SFO F;  4OIR E;  2WAQ K;  3WOD E;  2R7Z F;  4KMU E;  2NVQ F;  5BYH E;  2JA6 F;  4BY1 F;  4XLP E;  3S1N F;  5D4C E;  4BY7 F;  4XSX E;  2A6H E;  4A3M F;  3GTM F;  2JA8 F;  3S1M F;  4YG2 E;  5M5W F;  2O5I E;  5TMF E;  4OIP E;  4A3D F;  4X6A F;  3S17 F;  2B63 F;  4C2M F;  3HKZ K;  2NVX F;  4YFX E;  5D4E E;  3GTJ F;  5M3F F;  3H0G F;  4BBS F;  3S2D F;  1YNN K;  1I50 F;  4GZY E;  3GTL F;  4A3L F;  5D4D E;  2A6E E;  2BE5 E;  1IW7 E;  1YNJ K;  3S1Q F;  4G7H E;  2PPB E;  3PO3 F;  2O5J E;  1Y1V F;  3S15 F;  5IP7 F;  4A3E F;  3S1R F;  2NVT F;  3K7A F;  4XSZ E;  3HOW F;  1TWG F;  5C4J F;  4G7O E;  3H3V G;  3GTP F;  4Q5S E;  2A69 E;  5FLM F;  4MEY E;  4YFN E;  3RZD F;  1TWH F;  5C44 F;  5M5X F;  3FKI F;  1WCM F;  4C3J F;  4OIO E;  1ZYR E;  5IYB F;  5E17 E;  2WB1 I;  4MQ9 E;  2NVY F;  1I6V E;  4LJZ E;  3RZO F;  2R93 F;  4LK0 E;  3HOX F;  1R9T F;  3I4M F;  5E18 E;  3S14 F;  1TWC F;  4Y52 F;  3M4O F;  2VUM F;  3GTO F;  4ZH4 E;  4C3H F;  2E2H F;  4AYB K;  4MEX E;  3M3Y F;  4A3B F;  3I4N F;  2YU9 F;  3HOU F;  4OIN E;  3DXJ E;  1I6H F;  5C4X F;  2R92 F;  4C3I F;  3GTG F;  5TMC E;  5IPL E;  3HOZ F;  4JK1 E;  5M3M F;  2KRX A;  2E2J F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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