5FJ8L

Cryo-em structure of yeast rna polymerase iii elongation complex at 3. 9 a
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
45
structure length
45
Chain Sequence
b'TLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR'

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1
publication title Molecular Structures of Unbound and Transcribing RNA Polymerase III.
pubmed doi rcsb
molecule tags Transcription
structure length 45
sequence length 45
ec nomenclature
pdb deposition date 2015-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5fj8L00
2NVYL 4A3JL 1TWHL 1I50L 3HOUL 3GTML 3S15L 3H3VM 3CQZL 4X6AL 2JA7L 2NVQL 5C4JL 3HOVL 2Y0SP 4BY1L 4A3KL 2E2HL 3HOXL 1R9TL 2YU9L 2R92L 5FJ8L 3S1ML 1TWCL 5C44L 2B63L 3RZOL 5IP7L 2VUML 3H0GL 5M3FL 3FKIL 2E2IL 4A93L 3S17L 4A3FL 3S2DL 4C2M1 4A3CL 2JA5L 3S1QL 3GTJL 4A3DL 3I4ML 1I3QL 2R7ZL 5FLML 5IYDL 2R93L 4Y7NL 3GTKL 3S14L 5IYCL 2WAQP 3S16L 1TWFL 3K7AL 3HKZP 1K83L 3GTOL 4C3IL 4Y52L 4BBRL 5IP9L 3GTPL 3S1RL 1TWGL 4BXXL 5M3ML 3GTGL 3S1NL 4A3GL 5C4XL 3GTQL 3HOWL 4A3LL 4QIWP 4C3JL 3M3YL 3HOYL 1I6HL 2JA8L 4A3EL 2E2JL 3HOZL 3S2HL 2NVXL 4BBSL 3GTLL 3M4OL 3PO3L 5C3EL 3PO2L 5M5WL 1Y1WL 4C3HL 1WCML 4BY7L 2WB1P 4A3BL 5M5XL 1TWAL 4A3ML 1Y1VL 3RZDL 5IYBL 4AYBP 2NVTL 1SFOL 3I4NL 2JA6L 2PMZP 5M5YL 4A3IL
chains in the Genus database with same CATH superfamily
3MPSA 5DM71 2DSXA 1FHMA 3HOUL 1DX8A 4JAFA 2A6HD 3PZAA 1P7PA 3CQZL 4G6BA 2JA7L 5MLC3 1R9TL 5FJ8L 2NYDA 1VZGA 2ERJA 1VZIA 3H97A 2RFKB 3H0GL 1PZXA 2V0FA 4V196 2ERSA 3LWVB 1SMUA 3H9BA 5H1Sc 2J9UB 4A3CL 4C2M1 2JA5L 1C09A 3PWFA 1S24A 1IU6A 4A3DL 1LKPA 3WWLA 1T9OA 3KYXA 1BQ8A 5AI2A 4ZN1B 3GTKL 3S14L 1YUZA 4LHLA 3K7AL 4AI1A 2APOB 2XJRA 3GTOL 1H7VA 4K9FA 1IROA 2CKCA 5M3ML 2B5ID 2A69D 2Z3QB 4XXBB 4A3EL 3HOZL 5EINC 3S2HL 4AHYA 3HJWB 3M4OL 5GAHc 4AHWA 5C3EL 1OWCA 1B13A 2EY4E 3PO2L 2CKAA 3PIP1 5M5WL 1WCML 2WB1P 2XJVA 4A3BL 1YUXA 1NXGA 4AI2A 1IRNA 1PFYA 2NVTL 3I4NL 1VZHA 2NVYL 4A3JL 3A44A 2PSMC 2QL0A 3H3VM 3PKJA 2HR5A 2C6AA 1E8JA 5C4JL 4BY1L 1QCVA 4A3KL 2E2HL 1IU5A 3HOXL 2R92L 1VCXA 3LPEB 1TWCL 5C44L 4ME3A 3RZOL 4GS7D 3LWQB 2E2IL 5RXNA 1R0JA 3QVDA 3S1QL 5GADc 2V0EA 1S30A 4AHZA 1I3QL 5FLML 3HAXC 4AR3A 3PL5A 3WWNB 3KYUA 5IYCL 4YWMA 3S16L 5GAEc 1K83L 2M6OA 2O5JD 4BBRL 3GTPL 3GTGL 4A3GL 3HOWL 4QIWP 3P8BA 3J7Z1 3M3YL 5MFZA 1T9QA 3HOYL 3LNLA 1ZRPA 1NNQA 2NVXL 3GTLL 1SMWA 2L0ZA 6RXNA 1IW7D 1Y1WL 2XJTA 5JVG1 1B2JA 4BY7L 2XJPA 3KYVA 2KN9A 2AYJA 3IU3I 4A3ML 3H99A 5IYBL 1YK5A 1PFVA 2JA6L 4TPUA 4E6YA 2BE5D 4AI0A 4JADA 3PIO1 1TWHL 2H12A 5DM61 3K35A 3JR7A 1R0FA 4AI3A 7RXNA 2JI2A 5IY0A 1S2ZA 1RB9A 3HJYB 2VL6A 1RDVA 3S1ML 4YWLA 2K2DA 4AR6A 1RDGA 5M3FL 4AHXA 2ZIXA 1LKMA 2GMGA 3FKIL 3B08B 4A93L 3S17L 3B0AB 3S2DL 1BFYA 5K2ME 1R0GA 2A68D 4JAEA 3I4ML 2Z3RB 5IYDL 2R93L 1LKOA 4Y7NL 1LTLA 2WAQP 4ZN3B 3QQCE 3HKZP 1QQTA 2RDVA 4B8CD 4Y52L 2CR8A 1TWGL 2AQCA 4BXXL 3S1NL 5C4XL 3GTQL 3ZG6A 3KYWA 5MFPA 2C6BA 4C3JL 2MS3A 8RXNA 2JA8L 2PYAA 1BQ9A 2E2JL 1BRFA 1RYTA 4BBSL 1T9PA 1QYBA 4TVMA 3FDJA 3P2AA 2LCQA 1TWAL 5MF6A 2KKDA 1Y1VL 1Z92B 3KYYA 2PVEA 2JI1A 1SFOL 1R0HA 5M5YL 4A3IL 1I50L 3LWPB 1JYBA 1NXEA 3GTML 3S15L 3J7Y1 3H9CA 1PFUA 5AI3A 3VPBE 4X6AL 2V3BB 2NVQL 4AR4A 3HOVL 2Y0SP 1CADA 2M6PA 1SMMA 2YU9L 3MQKB 4AR5A 4POGA 2PVXA 3RZ6A 2B63L 5IP7L 2VUML 1OWBA 4WFN1 2M4VA 1ODHA 4A3FL 2AUSB 2XJQA 4UY81 3GTJL 2XJUA 3LWOB 5EIOC 1YK4A 3PKIA 2R7ZL 1B71A 1WJVA 1RYQA 4LHNA 1FHHA 2M4YA 1B2OA 1TWFL 4RXNA 4XGHA 5GAGc 4C3IL 5IP9L 2A6ED 1F4LA 3S1RL 5AN9H 4JAGA 1BE7A 4A3LL 3LWRB 1RWDA 1R0IA 1I6HL 2XJSA 3RYGA 1YV1A 3PO3L 2JI3A 3SS2A 1DVBA 3RZTA 3MSUA 4POFA 4U671 4C3HL 2HVYC 2PPTA 5M5XL 1CAAA 1PFWA 3RZDL 4AYBP 5JVH1 3NFPI 5MGNA 2PMZP
chains in the Genus database with same CATH topology
2NVYL 4A3JL 1TWHL 1I50L 3HOUL 3GTML 3S15L 3H3VM 3CQZL 4X6AL 2JA7L 2NVQL 5C4JL 3HOVL 2Y0SP 4BY1L 4A3KL 2E2HL 3HOXL 1R9TL 2YU9L 2R92L 5FJ8L 3S1ML 1TWCL 5C44L 2B63L 3RZOL 5IP7L 2VUML 3H0GL 5M3FL 3FKIL 2E2IL 4A93L 3S17L 4A3FL 3S2DL 4C2M1 4A3CL 2JA5L 3S1QL 3GTJL 4A3DL 3I4ML 1I3QL 2R7ZL 5FLML 5IYDL 2R93L 4Y7NL 3GTKL 3S14L 5IYCL 2WAQP 3S16L 1TWFL 3K7AL 3HKZP 1K83L 3GTOL 4C3IL 4Y52L 4BBRL 5IP9L 3GTPL 3S1RL 1TWGL 4BXXL 5M3ML 3GTGL 3S1NL 4A3GL 5C4XL 3GTQL 3HOWL 4A3LL 4QIWP 4C3JL 3M3YL 3HOYL 1I6HL 2JA8L 4A3EL 2E2JL 3HOZL 3S2HL 2NVXL 4BBSL 3GTLL 3M4OL 3PO3L 5C3EL 3PO2L 5M5WL 1Y1WL 4C3HL 1WCML 4BY7L 2WB1P 4A3BL 5M5XL 1TWAL 4A3ML 1Y1VL 3RZDL 5IYBL 4AYBP 2NVTL 1SFOL 3I4NL 2JA6L 2PMZP 5M5YL 4A3IL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVY L;  4A3J L;  1TWH L;  1I50 L;  3HOU L;  3GTM L;  3S15 L;  3H3V M;  3CQZ L;  4X6A L;  2JA7 L;  2NVQ L;  5C4J L;  3HOV L;  2Y0S P;  4BY1 L;  4A3K L;  2E2H L;  3HOX L;  1R9T L;  2YU9 L;  2R92 L;  5FJ8 L;  3S1M L;  1TWC L;  5C44 L;  2B63 L;  3RZO L;  5IP7 L;  2VUM L;  3H0G L;  5M3F L;  3FKI L;  2E2I L;  4A93 L;  3S17 L;  4A3F L;  3S2D L;  4C2M 1;  4A3C L;  2JA5 L;  3S1Q L;  3GTJ L;  4A3D L;  3I4M L;  1I3Q L;  2R7Z L;  5FLM L;  5IYD L;  2R93 L;  4Y7N L;  3GTK L;  3S14 L;  5IYC L;  2WAQ P;  3S16 L;  1TWF L;  3K7A L;  3HKZ P;  1K83 L;  3GTO L;  4C3I L;  4Y52 L;  4BBR L;  5IP9 L;  3GTP L;  3S1R L;  1TWG L;  4BXX L;  5M3M L;  3GTG L;  3S1N L;  4A3G L;  5C4X L;  3GTQ L;  3HOW L;  4A3L L;  4QIW P;  4C3J L;  3M3Y L;  3HOY L;  1I6H L;  2JA8 L;  4A3E L;  2E2J L;  3HOZ L;  3S2H L;  2NVX L;  4BBS L;  3GTL L;  3M4O L;  3PO3 L;  5C3E L;  3PO2 L;  5M5W L;  1Y1W L;  4C3H L;  1WCM L;  4BY7 L;  2WB1 P;  4A3B L;  5M5X L;  1TWA L;  4A3M L;  1Y1V L;  3RZD L;  5IYB L;  4AYB P;  2NVT L;  1SFO L;  3I4N L;  2JA6 L;  2PMZ P;  5M5Y L;  4A3I L; 
#chains in the Genus database with same CATH topology
 3MPS A;  5DM7 1;  2DSX A;  1FHM A;  3HOU L;  1DX8 A;  4JAF A;  2A6H D;  3PZA A;  1P7P A;  3CQZ L;  4G6B A;  2JA7 L;  5MLC 3;  1R9T L;  5FJ8 L;  2NYD A;  1VZG A;  2ERJ A;  1VZI A;  3H97 A;  2RFK B;  3H0G L;  1PZX A;  2V0F A;  4V19 6;  2ERS A;  3LWV B;  1SMU A;  3H9B A;  5H1S c;  2J9U B;  4A3C L;  4C2M 1;  2JA5 L;  1C09 A;  3PWF A;  1S24 A;  1IU6 A;  4A3D L;  1LKP A;  3WWL A;  1T9O A;  3KYX A;  1BQ8 A;  5AI2 A;  4ZN1 B;  3GTK L;  3S14 L;  1YUZ A;  4LHL A;  3K7A L;  4AI1 A;  2APO B;  2XJR A;  3GTO L;  1H7V A;  4K9F A;  1IRO A;  2CKC A;  5M3M L;  2B5I D;  2A69 D;  2Z3Q B;  4XXB B;  4A3E L;  3HOZ L;  5EIN C;  3S2H L;  4AHY A;  3HJW B;  3M4O L;  5GAH c;  4AHW A;  5C3E L;  1OWC A;  1B13 A;  2EY4 E;  3PO2 L;  2CKA A;  3PIP 1;  5M5W L;  1WCM L;  2WB1 P;  2XJV A;  4A3B L;  1YUX A;  1NXG A;  4AI2 A;  1IRN A;  1PFY A;  2NVT L;  3I4N L;  1VZH A;  2NVY L;  4A3J L;  3A44 A;  2PSM C;  2QL0 A;  3H3V M;  3PKJ A;  2HR5 A;  2C6A A;  1E8J A;  5C4J L;  4BY1 L;  1QCV A;  4A3K L;  2E2H L;  1IU5 A;  3HOX L;  2R92 L;  1VCX A;  3LPE B;  1TWC L;  5C44 L;  4ME3 A;  3RZO L;  4GS7 D;  3LWQ B;  2E2I L;  5RXN A;  1R0J A;  3QVD A;  3S1Q L;  5GAD c;  2V0E A;  1S30 A;  4AHZ A;  1I3Q L;  5FLM L;  3HAX C;  4AR3 A;  3PL5 A;  3WWN B;  3KYU A;  5IYC L;  4YWM A;  3S16 L;  5GAE c;  1K83 L;  2M6O A;  2O5J D;  4BBR L;  3GTP L;  3GTG L;  4A3G L;  3HOW L;  4QIW P;  3P8B A;  3J7Z 1;  3M3Y L;  5MFZ A;  1T9Q A;  3HOY L;  3LNL A;  1ZRP A;  1NNQ A;  2NVX L;  3GTL L;  1SMW A;  2L0Z A;  6RXN A;  1IW7 D;  1Y1W L;  2XJT A;  5JVG 1;  1B2J A;  4BY7 L;  2XJP A;  3KYV A;  2KN9 A;  2AYJ A;  3IU3 I;  4A3M L;  3H99 A;  5IYB L;  1YK5 A;  1PFV A;  2JA6 L;  4TPU A;  4E6Y A;  2BE5 D;  4AI0 A;  4JAD A;  3PIO 1;  1TWH L;  2H12 A;  5DM6 1;  3K35 A;  3JR7 A;  1R0F A;  4AI3 A;  7RXN A;  2JI2 A;  5IY0 A;  1S2Z A;  1RB9 A;  3HJY B;  2VL6 A;  1RDV A;  3S1M L;  4YWL A;  2K2D A;  4AR6 A;  1RDG A;  5M3F L;  4AHX A;  2ZIX A;  1LKM A;  2GMG A;  3FKI L;  3B08 B;  4A93 L;  3S17 L;  3B0A B;  3S2D L;  1BFY A;  5K2M E;  1R0G A;  2A68 D;  4JAE A;  3I4M L;  2Z3R B;  5IYD L;  2R93 L;  1LKO A;  4Y7N L;  1LTL A;  2WAQ P;  4ZN3 B;  3QQC E;  3HKZ P;  1QQT A;  2RDV A;  4B8C D;  4Y52 L;  2CR8 A;  1TWG L;  2AQC A;  4BXX L;  3S1N L;  5C4X L;  3GTQ L;  3ZG6 A;  3KYW A;  5MFP A;  2C6B A;  4C3J L;  2MS3 A;  8RXN A;  2JA8 L;  2PYA A;  1BQ9 A;  2E2J L;  1BRF A;  1RYT A;  4BBS L;  1T9P A;  1QYB A;  4TVM A;  3FDJ A;  3P2A A;  2LCQ A;  1TWA L;  5MF6 A;  2KKD A;  1Y1V L;  1Z92 B;  3KYY A;  2PVE A;  2JI1 A;  1SFO L;  1R0H A;  5M5Y L;  4A3I L;  1I50 L;  3LWP B;  1JYB A;  1NXE A;  3GTM L;  3S15 L;  3J7Y 1;  3H9C A;  1PFU A;  5AI3 A;  3VPB E;  4X6A L;  2V3B B;  2NVQ L;  4AR4 A;  3HOV L;  2Y0S P;  1CAD A;  2M6P A;  1SMM A;  2YU9 L;  3MQK B;  4AR5 A;  4POG A;  2PVX A;  3RZ6 A;  2B63 L;  5IP7 L;  2VUM L;  1OWB A;  4WFN 1;  2M4V A;  1ODH A;  4A3F L;  2AUS B;  2XJQ A;  4UY8 1;  3GTJ L;  2XJU A;  3LWO B;  5EIO C;  1YK4 A;  3PKI A;  2R7Z L;  1B71 A;  1WJV A;  1RYQ A;  4LHN A;  1FHH A;  2M4Y A;  1B2O A;  1TWF L;  4RXN A;  4XGH A;  5GAG c;  4C3I L;  5IP9 L;  2A6E D;  1F4L A;  3S1R L;  5AN9 H;  4JAG A;  1BE7 A;  4A3L L;  3LWR B;  1RWD A;  1R0I A;  1I6H L;  2XJS A;  3RYG A;  1YV1 A;  3PO3 L;  2JI3 A;  3SS2 A;  1DVB A;  3RZT A;  3MSU A;  4POF A;  4U67 1;  4C3H L;  2HVY C;  2PPT A;  5M5X L;  1CAA A;  1PFW A;  3RZD L;  4AYB P;  5JVH 1;  3NFP I;  5MGN A;  2PMZ P; 
#chains in the Genus database with same CATH homology
 2NVY L;  4A3J L;  1TWH L;  1I50 L;  3HOU L;  3GTM L;  3S15 L;  3H3V M;  3CQZ L;  4X6A L;  2JA7 L;  2NVQ L;  5C4J L;  3HOV L;  2Y0S P;  4BY1 L;  4A3K L;  2E2H L;  3HOX L;  1R9T L;  2YU9 L;  2R92 L;  5FJ8 L;  3S1M L;  1TWC L;  5C44 L;  2B63 L;  3RZO L;  5IP7 L;  2VUM L;  3H0G L;  5M3F L;  3FKI L;  2E2I L;  4A93 L;  3S17 L;  4A3F L;  3S2D L;  4C2M 1;  4A3C L;  2JA5 L;  3S1Q L;  3GTJ L;  4A3D L;  3I4M L;  1I3Q L;  2R7Z L;  5FLM L;  5IYD L;  2R93 L;  4Y7N L;  3GTK L;  3S14 L;  5IYC L;  2WAQ P;  3S16 L;  1TWF L;  3K7A L;  3HKZ P;  1K83 L;  3GTO L;  4C3I L;  4Y52 L;  4BBR L;  5IP9 L;  3GTP L;  3S1R L;  1TWG L;  4BXX L;  5M3M L;  3GTG L;  3S1N L;  4A3G L;  5C4X L;  3GTQ L;  3HOW L;  4A3L L;  4QIW P;  4C3J L;  3M3Y L;  3HOY L;  1I6H L;  2JA8 L;  4A3E L;  2E2J L;  3HOZ L;  3S2H L;  2NVX L;  4BBS L;  3GTL L;  3M4O L;  3PO3 L;  5C3E L;  3PO2 L;  5M5W L;  1Y1W L;  4C3H L;  1WCM L;  4BY7 L;  2WB1 P;  4A3B L;  5M5X L;  1TWA L;  4A3M L;  1Y1V L;  3RZD L;  5IYB L;  4AYB P;  2NVT L;  1SFO L;  3I4N L;  2JA6 L;  2PMZ P;  5M5Y L;  4A3I L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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