5FJ8L

Cryo-em structure of yeast rna polymerase iii elongation complex at 3. 9 a
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
45
structure length
45
Chain Sequence
TLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1
publication title Molecular Structures of Unbound and Transcribing RNA Polymerase III.
pubmed doi rcsb
molecule tags Transcription
structure length 45
sequence length 45
ec nomenclature
pdb deposition date 2015-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5fj8L00
4BY1L 3GTOL 4X6AL 4C2M1 4C3IL 2B63L 5M5WL 5M3ML 3FKIL 3PO2L 3S2HL 2R7ZL 5M5YL 3HOVL 5C44L 3GTLL 5IYDL 3H3VM 1SFOL 3M3YL 1Y1WL 2R93L 3HOZL 4A3DL 2JA7L 4BBRL 3RZOL 4A93L 1I3QL 3K7AL 4C3HL 2NVTL 2E2HL 1TWGL 5C4XL 3S16L 4BY7L 2JA5L 5IYCL 5IP7L 4C3JL 3GTKL 3HOXL 4A3ML 4QIWP 2NVQL 2JA8L 3HOWL 1TWFL 1I6HL 3GTML 2WAQP 4A3EL 3S15L 2R92L 2PMZP 3S2DL 2Y0SP 4A3CL 5FJ8L 1WCML 3GTQL 3S1ML 1K83L 3S14L 5M3FL 3H0GL 4AYBP 3S1RL 3S1QL 3S17L 2NVXL 2E2JL 4A3KL 5C3EL 1TWCL 4A3FL 2WB1P 4A3JL 3HOUL 5M5XL 4Y7NL 5C4JL 3GTGL 3HKZP 2YU9L 3GTPL 3RZDL 3I4NL 5IP9L 4BXXL 3HOYL 1I50L 4A3BL 1TWHL 4A3LL 5FLML 4Y52L 4A3GL 3M4OL 5IYBL 2NVYL 2JA6L 3CQZL 4BBSL 3PO3L 2VUML 1TWAL 4A3IL 2E2IL 1Y1VL 3GTJL 3S1NL 3I4ML 1R9TL
chains in the Genus database with same CATH superfamily
1R0FA 2XJTA 2LCQA 1NNQA 5RXNA 4XXBB 4LHNA 4POGA 3H9BA 1B13A 3FKIL 2C6BA 1IROA 2R7ZL 5M5YL 1PFWA 5K2ME 4UY81 3H3VM 3PL5A 3RZ6A 2ZIXA 1WJVA 4A3DL 1S24A 2JA7L 4BBRL 4AHZA 3K7AL 1IU6A 3LNLA 4XGHA 2CR8A 4E6YA 5C4XL 3NFPI 4WFN1 3PIP1 5IP7L 5GAEc 2JI3A 4C3JL 3MSUA 2A6HD 3HOWL 2M6PA 1IRNA 2R92L 2VL6A 3GTQL 1SMUA 2NYDA 3K35A 3S14L 1BQ8A 4K9FA 5AN9H 3S1RL 5EINC 5AI3A 1PFVA 1T9OA 5MLC3 1PZXA 1NXEA 4A3KL 5C3EL 1TWCL 3VPBE 2ERJA 2AUSB 2YU9L 4GS7D 4AI1A 1ZRPA 3KYYA 5FLML 4JADA 3LWPB 3ZG6A 4ZN3B 2XJVA 4BBSL 2AQCA 1TWAL 2C6AA 2PVXA 1Y1VL 2H12A 1YUXA 3S1NL 1RDGA 3I4ML 4AI0A 3P2AA 4AR3A 2QL0A 3PKIA 3HOVL 2KKDA 2M6OA 1SFOL 3M3YL 1S30A 2PYAA 2JI1A 1I3QL 1RYTA 4YWMA 3FDJA 5GAGc 2A68D 2E2HL 3H99A 3S16L 4AHYA 4AI2A 3GTKL 1VZHA 4A3ML 2NVQL 2JA8L 1YV1A 5AI2A 2JI2A 4A3EL 3S15L 3HJWB 1PFUA 2PMZP 2Z3RB 1SMWA 1IU5A 2Y0SP 2A6ED 1LKOA 1IW7D 3PWFA 4AYBP 1C09A 3QVDA 1B2JA 3IU3I 3S1QL 2M4YA 2E2JL 5DM61 4U671 3WWLA 4ME3A 4A3JL 4AI3A 5M5XL 1T9QA 3HJYB 3GTGL 1BE7A 1QCVA 3GTPL 3B0AB 5IP9L 2M4VA 1TWHL 4A3GL 2CKCA 3J7Z1 2A69D 2AYJA 2RFKB 1LKPA 4AR6A 3KYUA 2BE5D 1CAAA 1DX8A 3GTJL 1RB9A 1R0IA 3H97A 4AHWA 4BY7L 4X6AL 2V3BB 4C2M1 4C3IL 2HVYC 5M3ML 3S2HL 1H7VA 1OWCA 1P7PA 1E8JA 2K2DA 5H1Sc 1RWDA 5GAHc 3RZOL 3HAXC 2ERSA 4C3HL 2HR5A 2NVTL 4B8CD 3B08B 1PFYA 2DSXA 1B2OA 1LKMA 1BRFA 1T9PA 3A44A 2EY4E 1TWFL 1CADA 2Z3QB 2PVEA 5DM71 3PZAA 3LWOB 1ODHA 1QYBA 1DVBA 4A3CL 1WCML 3S1ML 4G6BA 1K83L 3KYWA 2V0EA 2MS3A 3H0GL 4AHXA 3MPSA 1BQ9A 2NVXL 3H9CA 2XJSA 2XJRA 8RXNA 2WB1P 4YWLA 1R0GA 5JVH1 5IY0A 2RDVA 1YUZA 3LWRB 3RZDL 3I4NL 3LWVB 3HOYL 1I50L 2V0FA 5MFPA 4A3LL 3RZTA 4Y52L 3KYVA 5MF6A 2XJPA 3M4OL 5IYBL 2NVYL 2JA6L 3CQZL 3PO3L 2VUML 3RYGA 5MGNA 3WWNB 1R0HA 1RYQA 3PIO1 1RDVA 1R9TL 4BY1L 1QQTA 1B71A 3GTOL 2B63L 4JAEA 5M5WL 1F4LA 1JYBA 3PO2L 2PSMC 4V196 3JR7A 2XJUA 1Z92B 5C44L 4RXNA 3GTLL 5IYDL 2L0ZA 1Y1WL 2R93L 1VZGA 3HOZL 4A93L 1R0JA 3QQCE 1TWGL 2J9UB 4LHLA 2JA5L 5IYCL 2B5ID 3HOXL 4QIWP 1I6HL 2GMGA 3LPEB 3GTML 1FHMA 1BFYA 2WAQP 5MFZA 1OWBA 4AR4A 4JAGA 3SS2A 4TPUA 3S2DL 1YK5A 5GADc 5FJ8L 5JVG1 6RXNA 2KN9A 5M3FL 4POFA 1LTLA 3PKJA 3S17L 2APOB 1FHHA 1SMMA 4A3FL 1VCXA 3HOUL 3KYXA 1VZIA 4Y7NL 3MQKB 5C4JL 3HKZP 3LWQB 4ZN1B 5EIOC 4BXXL 4AR5A 3J7Y1 4A3BL 2O5JD 1S2ZA 4TVMA 4JAFA 3P8BA 2CKAA 7RXNA 1YK4A 2PPTA 1NXGA 4A3IL 2XJQA 2E2IL
chains in the Genus database with same CATH topology
4BY1L 3GTOL 4X6AL 4C2M1 4C3IL 2B63L 5M5WL 5M3ML 3FKIL 3PO2L 3S2HL 2R7ZL 5M5YL 3HOVL 5C44L 3GTLL 5IYDL 3H3VM 1SFOL 3M3YL 1Y1WL 2R93L 3HOZL 4A3DL 2JA7L 4BBRL 3RZOL 4A93L 1I3QL 3K7AL 4C3HL 2NVTL 2E2HL 1TWGL 5C4XL 3S16L 4BY7L 2JA5L 5IYCL 5IP7L 4C3JL 3GTKL 3HOXL 4A3ML 4QIWP 2NVQL 2JA8L 3HOWL 1TWFL 1I6HL 3GTML 2WAQP 4A3EL 3S15L 2R92L 2PMZP 3S2DL 2Y0SP 4A3CL 5FJ8L 1WCML 3GTQL 3S1ML 1K83L 3S14L 5M3FL 3H0GL 4AYBP 3S1RL 3S1QL 3S17L 2NVXL 2E2JL 4A3KL 5C3EL 1TWCL 4A3FL 2WB1P 4A3JL 3HOUL 5M5XL 4Y7NL 5C4JL 3GTGL 3HKZP 2YU9L 3GTPL 3RZDL 3I4NL 5IP9L 4BXXL 3HOYL 1I50L 4A3BL 1TWHL 4A3LL 5FLML 4Y52L 4A3GL 3M4OL 5IYBL 2NVYL 2JA6L 3CQZL 4BBSL 3PO3L 2VUML 1TWAL 4A3IL 2E2IL 1Y1VL 3GTJL 3S1NL 3I4ML 1R9TL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BY1 L;  3GTO L;  4X6A L;  4C2M 1;  4C3I L;  2B63 L;  5M5W L;  5M3M L;  3FKI L;  3PO2 L;  3S2H L;  2R7Z L;  5M5Y L;  3HOV L;  5C44 L;  3GTL L;  5IYD L;  3H3V M;  1SFO L;  3M3Y L;  1Y1W L;  2R93 L;  3HOZ L;  4A3D L;  2JA7 L;  4BBR L;  3RZO L;  4A93 L;  1I3Q L;  3K7A L;  4C3H L;  2NVT L;  2E2H L;  1TWG L;  5C4X L;  3S16 L;  4BY7 L;  2JA5 L;  5IYC L;  5IP7 L;  4C3J L;  3GTK L;  3HOX L;  4A3M L;  4QIW P;  2NVQ L;  2JA8 L;  3HOW L;  1TWF L;  1I6H L;  3GTM L;  2WAQ P;  4A3E L;  3S15 L;  2R92 L;  2PMZ P;  3S2D L;  2Y0S P;  4A3C L;  5FJ8 L;  1WCM L;  3GTQ L;  3S1M L;  1K83 L;  3S14 L;  5M3F L;  3H0G L;  4AYB P;  3S1R L;  3S1Q L;  3S17 L;  2NVX L;  2E2J L;  4A3K L;  5C3E L;  1TWC L;  4A3F L;  2WB1 P;  4A3J L;  3HOU L;  5M5X L;  4Y7N L;  5C4J L;  3GTG L;  3HKZ P;  2YU9 L;  3GTP L;  3RZD L;  3I4N L;  5IP9 L;  4BXX L;  3HOY L;  1I50 L;  4A3B L;  1TWH L;  4A3L L;  5FLM L;  4Y52 L;  4A3G L;  3M4O L;  5IYB L;  2NVY L;  2JA6 L;  3CQZ L;  4BBS L;  3PO3 L;  2VUM L;  1TWA L;  4A3I L;  2E2I L;  1Y1V L;  3GTJ L;  3S1N L;  3I4M L;  1R9T L; 
#chains in the Genus database with same CATH topology
 1R0F A;  2XJT A;  2LCQ A;  1NNQ A;  5RXN A;  4XXB B;  4LHN A;  4POG A;  3H9B A;  1B13 A;  3FKI L;  2C6B A;  1IRO A;  2R7Z L;  5M5Y L;  1PFW A;  5K2M E;  4UY8 1;  3H3V M;  3PL5 A;  3RZ6 A;  2ZIX A;  1WJV A;  4A3D L;  1S24 A;  2JA7 L;  4BBR L;  4AHZ A;  3K7A L;  1IU6 A;  3LNL A;  4XGH A;  2CR8 A;  4E6Y A;  5C4X L;  3NFP I;  4WFN 1;  3PIP 1;  5IP7 L;  5GAE c;  2JI3 A;  4C3J L;  3MSU A;  2A6H D;  3HOW L;  2M6P A;  1IRN A;  2R92 L;  2VL6 A;  3GTQ L;  1SMU A;  2NYD A;  3K35 A;  3S14 L;  1BQ8 A;  4K9F A;  5AN9 H;  3S1R L;  5EIN C;  5AI3 A;  1PFV A;  1T9O A;  5MLC 3;  1PZX A;  1NXE A;  4A3K L;  5C3E L;  1TWC L;  3VPB E;  2ERJ A;  2AUS B;  2YU9 L;  4GS7 D;  4AI1 A;  1ZRP A;  3KYY A;  5FLM L;  4JAD A;  3LWP B;  3ZG6 A;  4ZN3 B;  2XJV A;  4BBS L;  2AQC A;  1TWA L;  2C6A A;  2PVX A;  1Y1V L;  2H12 A;  1YUX A;  3S1N L;  1RDG A;  3I4M L;  4AI0 A;  3P2A A;  4AR3 A;  2QL0 A;  3PKI A;  3HOV L;  2KKD A;  2M6O A;  1SFO L;  3M3Y L;  1S30 A;  2PYA A;  2JI1 A;  1I3Q L;  1RYT A;  4YWM A;  3FDJ A;  5GAG c;  2A68 D;  2E2H L;  3H99 A;  3S16 L;  4AHY A;  4AI2 A;  3GTK L;  1VZH A;  4A3M L;  2NVQ L;  2JA8 L;  1YV1 A;  5AI2 A;  2JI2 A;  4A3E L;  3S15 L;  3HJW B;  1PFU A;  2PMZ P;  2Z3R B;  1SMW A;  1IU5 A;  2Y0S P;  2A6E D;  1LKO A;  1IW7 D;  3PWF A;  4AYB P;  1C09 A;  3QVD A;  1B2J A;  3IU3 I;  3S1Q L;  2M4Y A;  2E2J L;  5DM6 1;  4U67 1;  3WWL A;  4ME3 A;  4A3J L;  4AI3 A;  5M5X L;  1T9Q A;  3HJY B;  3GTG L;  1BE7 A;  1QCV A;  3GTP L;  3B0A B;  5IP9 L;  2M4V A;  1TWH L;  4A3G L;  2CKC A;  3J7Z 1;  2A69 D;  2AYJ A;  2RFK B;  1LKP A;  4AR6 A;  3KYU A;  2BE5 D;  1CAA A;  1DX8 A;  3GTJ L;  1RB9 A;  1R0I A;  3H97 A;  4AHW A;  4BY7 L;  4X6A L;  2V3B B;  4C2M 1;  4C3I L;  2HVY C;  5M3M L;  3S2H L;  1H7V A;  1OWC A;  1P7P A;  1E8J A;  2K2D A;  5H1S c;  1RWD A;  5GAH c;  3RZO L;  3HAX C;  2ERS A;  4C3H L;  2HR5 A;  2NVT L;  4B8C D;  3B08 B;  1PFY A;  2DSX A;  1B2O A;  1LKM A;  1BRF A;  1T9P A;  3A44 A;  2EY4 E;  1TWF L;  1CAD A;  2Z3Q B;  2PVE A;  5DM7 1;  3PZA A;  3LWO B;  1ODH A;  1QYB A;  1DVB A;  4A3C L;  1WCM L;  3S1M L;  4G6B A;  1K83 L;  3KYW A;  2V0E A;  2MS3 A;  3H0G L;  4AHX A;  3MPS A;  1BQ9 A;  2NVX L;  3H9C A;  2XJS A;  2XJR A;  8RXN A;  2WB1 P;  4YWL A;  1R0G A;  5JVH 1;  5IY0 A;  2RDV A;  1YUZ A;  3LWR B;  3RZD L;  3I4N L;  3LWV B;  3HOY L;  1I50 L;  2V0F A;  5MFP A;  4A3L L;  3RZT A;  4Y52 L;  3KYV A;  5MF6 A;  2XJP A;  3M4O L;  5IYB L;  2NVY L;  2JA6 L;  3CQZ L;  3PO3 L;  2VUM L;  3RYG A;  5MGN A;  3WWN B;  1R0H A;  1RYQ A;  3PIO 1;  1RDV A;  1R9T L;  4BY1 L;  1QQT A;  1B71 A;  3GTO L;  2B63 L;  4JAE A;  5M5W L;  1F4L A;  1JYB A;  3PO2 L;  2PSM C;  4V19 6;  3JR7 A;  2XJU A;  1Z92 B;  5C44 L;  4RXN A;  3GTL L;  5IYD L;  2L0Z A;  1Y1W L;  2R93 L;  1VZG A;  3HOZ L;  4A93 L;  1R0J A;  3QQC E;  1TWG L;  2J9U B;  4LHL A;  2JA5 L;  5IYC L;  2B5I D;  3HOX L;  4QIW P;  1I6H L;  2GMG A;  3LPE B;  3GTM L;  1FHM A;  1BFY A;  2WAQ P;  5MFZ A;  1OWB A;  4AR4 A;  4JAG A;  3SS2 A;  4TPU A;  3S2D L;  1YK5 A;  5GAD c;  5FJ8 L;  5JVG 1;  6RXN A;  2KN9 A;  5M3F L;  4POF A;  1LTL A;  3PKJ A;  3S17 L;  2APO B;  1FHH A;  1SMM A;  4A3F L;  1VCX A;  3HOU L;  3KYX A;  1VZI A;  4Y7N L;  3MQK B;  5C4J L;  3HKZ P;  3LWQ B;  4ZN1 B;  5EIO C;  4BXX L;  4AR5 A;  3J7Y 1;  4A3B L;  2O5J D;  1S2Z A;  4TVM A;  4JAF A;  3P8B A;  2CKA A;  7RXN A;  1YK4 A;  2PPT A;  1NXG A;  4A3I L;  2XJQ A;  2E2I L; 
#chains in the Genus database with same CATH homology
 4BY1 L;  3GTO L;  4X6A L;  4C2M 1;  4C3I L;  2B63 L;  5M5W L;  5M3M L;  3FKI L;  3PO2 L;  3S2H L;  2R7Z L;  5M5Y L;  3HOV L;  5C44 L;  3GTL L;  5IYD L;  3H3V M;  1SFO L;  3M3Y L;  1Y1W L;  2R93 L;  3HOZ L;  4A3D L;  2JA7 L;  4BBR L;  3RZO L;  4A93 L;  1I3Q L;  3K7A L;  4C3H L;  2NVT L;  2E2H L;  1TWG L;  5C4X L;  3S16 L;  4BY7 L;  2JA5 L;  5IYC L;  5IP7 L;  4C3J L;  3GTK L;  3HOX L;  4A3M L;  4QIW P;  2NVQ L;  2JA8 L;  3HOW L;  1TWF L;  1I6H L;  3GTM L;  2WAQ P;  4A3E L;  3S15 L;  2R92 L;  2PMZ P;  3S2D L;  2Y0S P;  4A3C L;  5FJ8 L;  1WCM L;  3GTQ L;  3S1M L;  1K83 L;  3S14 L;  5M3F L;  3H0G L;  4AYB P;  3S1R L;  3S1Q L;  3S17 L;  2NVX L;  2E2J L;  4A3K L;  5C3E L;  1TWC L;  4A3F L;  2WB1 P;  4A3J L;  3HOU L;  5M5X L;  4Y7N L;  5C4J L;  3GTG L;  3HKZ P;  2YU9 L;  3GTP L;  3RZD L;  3I4N L;  5IP9 L;  4BXX L;  3HOY L;  1I50 L;  4A3B L;  1TWH L;  4A3L L;  5FLM L;  4Y52 L;  4A3G L;  3M4O L;  5IYB L;  2NVY L;  2JA6 L;  3CQZ L;  4BBS L;  3PO3 L;  2VUM L;  1TWA L;  4A3I L;  2E2I L;  1Y1V L;  3GTJ L;  3S1N L;  3I4M L;  1R9T L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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