5FJQA

Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in cellvibrio japonicus
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
180
structure length
180
Chain Sequence
HGYVSSPKSRVIQCKENGIENPTHPACIAAKAAGNGGLYTPQEVAVGGVRDNHDYYIPDGRLCSANRANLFGMDLARNDWPATSVTPGAREFVWTNTAAHKTKYFRYYITPQGYDHSQPLRWSDLQLIHDSGPADQEWVSTHNVILPYRTGRHIIYSIWQRDWDRDAAEGFYQCIDVDFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords CARBOHYDRATE BINDING PROTEIN, PUTATIVE, CPB33A
publication title Structural and Functional Analysis of a Lytic Polysaccharide Monooxygenase Important for Efficient Utilization of Chitin in Cellvibrio Japonicus
pubmed doi rcsb
source organism Cellvibrio japonicus
total genus 57
structure length 180
sequence length 180
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2015-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 5fjqA00
3UAMA 2YOWA 4ALCA 4ALSA 4OY7A 5FTZA 4OY8A 4OY6A 4ALTA 2XWXA 4ALRA 2YOYA 4GBOA 4ALEA 5FJQA 2LHSA 5AA7A 2BEMA 2YOXA 2BENA 4ALQA 5IJUA 4A02A
chains in the Genus database with same CATH superfamily
2JHVA 4JHPB 4OY8A 5FTZA 3KYSA 3T5IA 4EISB 4JV8B 5L7KA 5E80A 5HGUA 5F2UA 2YOYA 3JUAA 2JHTA 2BENA 2JHUA 2JHXA 4MAHA 5IJUA 3L15A 1QVYA 3UAMA 4ALSA 5ACIA 1KSJB 5ACGA 2JI0A 5DQEA 1DOAB 3EIIA 4D7VA 5EMVA 2XWXA 5E8FA 5ACJA 4JV6B 5TARB 5FOHA 2VTCA 4JVBB 4MAIA 4ALEA 5DQ8A 5AA7A 2YOXA 3ZUDA 4LN0A 4RE1A 3RBQA 1KMTA 4QI8A 5HNOA 1DS6B 1KSHB 2JHYA 1KSGB 4OY6A 4GOJC 4ALTA 5EMWA 5TB5B 1FT0A 2JHSA 4ALRA 4EIRA 1FT3A 2BEMA 4D7UA 4A02A 5ACHA 2JHZA 4FMRA 2YOWA 4ALCA 4OY7A 4JVFB 1FSOA 2YETA 4F38B 3EJAA 2JHWA 5HNPA 4EISA 4GBOA 4GOKC 5FJQA 1FSTA 5ACFA 2LHSA 1HH4D 1RHOA 4ALQA 1GDFA 3T5GB 4B5QA 2R5OA 3GQQA 1AJWA 2BXWA
chains in the Genus database with same CATH topology
3UAMA 2YOWA 4ALCA 4ALSA 4OY7A 5FTZA 4OY8A 4OY6A 4ALTA 2XWXA 4ALRA 2YOYA 4GBOA 4ALEA 5FJQA 2LHSA 5AA7A 2BEMA 2YOXA 2BENA 4ALQA 5IJUA 4A02A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UAM A;  2YOW A;  4ALC A;  4ALS A;  4OY7 A;  5FTZ A;  4OY8 A;  4OY6 A;  4ALT A;  2XWX A;  4ALR A;  2YOY A;  4GBO A;  4ALE A;  5FJQ A;  2LHS A;  5AA7 A;  2BEM A;  2YOX A;  2BEN A;  4ALQ A;  5IJU A;  4A02 A; 
#chains in the Genus database with same CATH topology
 2JHV A;  4JHP B;  4OY8 A;  5FTZ A;  3KYS A;  3T5I A;  4EIS B;  4JV8 B;  5L7K A;  5E80 A;  5HGU A;  5F2U A;  2YOY A;  3JUA A;  2JHT A;  2BEN A;  2JHU A;  2JHX A;  4MAH A;  5IJU A;  3L15 A;  1QVY A;  3UAM A;  4ALS A;  5ACI A;  1KSJ B;  5ACG A;  2JI0 A;  5DQE A;  1DOA B;  3EII A;  4D7V A;  5EMV A;  2XWX A;  5E8F A;  5ACJ A;  4JV6 B;  5TAR B;  5FOH A;  2VTC A;  4JVB B;  4MAI A;  4ALE A;  5DQ8 A;  5AA7 A;  2YOX A;  3ZUD A;  4LN0 A;  4RE1 A;  3RBQ A;  1KMT A;  4QI8 A;  5HNO A;  1DS6 B;  1KSH B;  2JHY A;  1KSG B;  4OY6 A;  4GOJ C;  4ALT A;  5EMW A;  5TB5 B;  1FT0 A;  2JHS A;  4ALR A;  4EIR A;  1FT3 A;  2BEM A;  4D7U A;  4A02 A;  5ACH A;  2JHZ A;  4FMR A;  2YOW A;  4ALC A;  4OY7 A;  4JVF B;  1FSO A;  2YET A;  4F38 B;  3EJA A;  2JHW A;  5HNP A;  4EIS A;  4GBO A;  4GOK C;  5FJQ A;  1FST A;  5ACF A;  2LHS A;  1HH4 D;  1RHO A;  4ALQ A;  1GDF A;  3T5G B;  4B5Q A;  2R5O A;  3GQQ A;  1AJW A;  2BXW A; 
#chains in the Genus database with same CATH homology
 3UAM A;  2YOW A;  4ALC A;  4ALS A;  4OY7 A;  5FTZ A;  4OY8 A;  4OY6 A;  4ALT A;  2XWX A;  4ALR A;  2YOY A;  4GBO A;  4ALE A;  5FJQ A;  2LHS A;  5AA7 A;  2BEM A;  2YOX A;  2BEN A;  4ALQ A;  5IJU A;  4A02 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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