5FMIA

Human bak q77l
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
162
structure length
162
Chain Sequence
SEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRLLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHSIARWIAQRGGWVAALNLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords BCL-2 HOMOLOGOUS ANTAGONIST/KILLER
publication title Physiological Restraint of Bak by Bcl-Xl is Essential for Cell Survival.
pubmed doi rcsb
source organism Homo sapiens
total genus 66
structure length 162
sequence length 162
ec nomenclature
pdb deposition date 2015-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 5fmiA00
1GJHA 4WMRA 1LXLA 4BPIA 4ZIIA 2M5BA 5IEZA 5FC4A 3IO9A 2JCNA 2PQKA 5KTGA 3IHCA 4HW4A 4YJ4A 2IMTA 1PQ1A 4BD7A 3PK1A 2VM6A 3CVAX 5C3FA 1K3KA 3WIXA 4S0PA 4ZIGA 3D7VA 4ZBFA 5FDRA 1R2HA 3MQPA 4U2UA 2VOFA 4OYDA 1G5JA 2ME8A 2MHSA 1R2IA 3IIHA 5FDOA 3KJ1A 2K7WA 4ZIFA 2O2MA 2KBWA 4B4SA 1YSNA 2ABOA 2ROCA 1YSGA 2BZWA 3KJ2A 1BXLA 5FMIA 2A5YA 1O0LA 3BL2A 3KJ0A 2B48A 2NL9A 1DDBA 2O2NA 4ZIHA 1Q59A 4OQ6A 2NLAA 2MEJA 4U2VA 4BD6A 2RODA 2BIDA 5KU9A 2O21A 4QVXA 3KZ0A 4QNQA 5JSBA 4BD8A 4BDUA 1PQ0A 2XPXA 2XA0A 1AF3A 2WH6A 2VOGA 2VOHA 1WSXA 4S0OA 4BPJA 4YK9A 1R2DA 3QBRA 1R2EA 1G5MA 2KUAA 2IMSA 2O2FA 4ZIEA 3ILCA 2VOIA 3IIGA 1F16A 4ZBIA 1MK3A 2V6QA 4HW3A 1ZY3A 4BD2A 3IHEA 3WIYA 5IF4A 3MK8A 1YSIA 3I1HA 4MI8A 1YSWA 4K5BC 2O22A 2YV6A 3DVUA 3IHDA 4ZEQA 2W3LA 4OQ5A 4HW2A 2JM6B 4G35A 1R2GA 1OHUA 1MAZA 1TY4A 5C6HA 2LR1A
chains in the Genus database with same CATH superfamily
1GJHA 4LQKA 4WMRA 1LXLA 4BPIA 4ZIIA 2M5BA 5IEZA 5FC4A 3IO9A 2I39A 2JCNA 2PQKA 5KTGA 3IHCA 4HW4A 4YJ4A 2IMTA 1PQ1A 2VVYA 4BD7A 3PK1A 2VM6A 3CVAX 5C3FA 1K3KA 3WIXA 4S0PA 4ZIGA 3D7VA 4ZBFA 5FDRA 1R2HA 3MQPA 4U2UA 4D2LA 2VOFA 4OYDA 1G5JA 2ME8A 2MHSA 1R2IA 3IIHA 5FDOA 3KJ1A 2K7WA 4ZIFA 2O2MA 2KBWA 4B4SA 1YSNA 2ABOA 2ROCA 1YSGA 2BZWA 3KJ2A 1BXLA 5FMIA 2A5YA 1O0LA 3BL2A 3KJ0A 4D2MA 2B48A 2NL9A 2JBXA 2O42A 1DDBA 4UF2A 2K36A 2O2NA 4ZIHA 1Q59A 4OQ6A 2NLAA 2MEJA 4U2VA 4BD6A 2RODA 2BIDA 5KU9A 2O21A 4QVXA 3KZ0A 4QNQA 5JSBA 4BD8A 4BDUA 1PQ0A 2XPXA 2XA0A 1AF3A 2WH6A 3JRVA 2VOGA 2VOHA 2VTYA 1WSXA 4S0OA 4BPJA 4YK9A 1R2DA 3QBRA 1R2EA 1G5MA 2VVXA 2KUAA 4BBDA 2IMSA 2JBYA 2O2FA 4ZIEA 4UF3A 4UF1A 3ILCA 2VOIA 2UXEA 3IIGA 1F16A 4ZBIA 1MK3A 2V6QA 4HW3A 1ZY3A 4BD2A 3IHEA 3WIYA 5IF4A 3MK8A 1YSIA 3I1HA 4MI8A 1YSWA 2VVWA 4K5BC 2O22A 2YV6A 3DVUA 3IHDA 4ZEQA 2W3LA 4OQ5A 4BBBA 4HW2A 2JM6B 4G35A 1R2GA 1OHUA 4M0SA 1MAZA 1TY4A 4BBCA 5C6HA 2LR1A
chains in the Genus database with same CATH topology
1GJHA 4WMRA 1LXLA 4BPIA 4ZIIA 2M5BA 5IEZA 5FC4A 3IO9A 2JCNA 2PQKA 5KTGA 3IHCA 4HW4A 4YJ4A 2IMTA 1PQ1A 4BD7A 3PK1A 2VM6A 3CVAX 5C3FA 1K3KA 3WIXA 4S0PA 4ZIGA 3D7VA 4ZBFA 5FDRA 1R2HA 3MQPA 4U2UA 2VOFA 4OYDA 1G5JA 2ME8A 2MHSA 1R2IA 3IIHA 5FDOA 3KJ1A 2K7WA 4ZIFA 2O2MA 2KBWA 4B4SA 1YSNA 2ABOA 2ROCA 1YSGA 2BZWA 3KJ2A 1BXLA 5FMIA 2A5YA 1O0LA 3BL2A 3KJ0A 2B48A 2NL9A 1DDBA 2O2NA 4ZIHA 1Q59A 4OQ6A 2NLAA 2MEJA 4U2VA 4BD6A 2RODA 2BIDA 5KU9A 2O21A 4QVXA 3KZ0A 4QNQA 5JSBA 4BD8A 4BDUA 1PQ0A 2XPXA 2XA0A 1AF3A 2WH6A 2VOGA 2VOHA 1WSXA 4S0OA 4BPJA 4YK9A 1R2DA 3QBRA 1R2EA 1G5MA 2KUAA 2IMSA 2O2FA 4ZIEA 3ILCA 2VOIA 3IIGA 1F16A 4ZBIA 1MK3A 2V6QA 4HW3A 1ZY3A 4BD2A 3IHEA 3WIYA 5IF4A 3MK8A 1YSIA 3I1HA 4MI8A 1YSWA 4K5BC 2O22A 2YV6A 3DVUA 3IHDA 4ZEQA 2W3LA 4OQ5A 4HW2A 2JM6B 4G35A 1R2GA 1OHUA 1MAZA 1TY4A 5C6HA 2LR1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GJH A;  4WMR A;  1LXL A;  4BPI A;  4ZII A;  2M5B A;  5IEZ A;  5FC4 A;  3IO9 A;  2JCN A;  2PQK A;  5KTG A;  3IHC A;  4HW4 A;  4YJ4 A;  2IMT A;  1PQ1 A;  4BD7 A;  3PK1 A;  2VM6 A;  3CVA X;  5C3F A;  1K3K A;  3WIX A;  4S0P A;  4ZIG A;  3D7V A;  4ZBF A;  5FDR A;  1R2H A;  3MQP A;  4U2U A;  2VOF A;  4OYD A;  1G5J A;  2ME8 A;  2MHS A;  1R2I A;  3IIH A;  5FDO A;  3KJ1 A;  2K7W A;  4ZIF A;  2O2M A;  2KBW A;  4B4S A;  1YSN A;  2ABO A;  2ROC A;  1YSG A;  2BZW A;  3KJ2 A;  1BXL A;  5FMI A;  2A5Y A;  1O0L A;  3BL2 A;  3KJ0 A;  2B48 A;  2NL9 A;  1DDB A;  2O2N A;  4ZIH A;  1Q59 A;  4OQ6 A;  2NLA A;  2MEJ A;  4U2V A;  4BD6 A;  2ROD A;  2BID A;  5KU9 A;  2O21 A;  4QVX A;  3KZ0 A;  4QNQ A;  5JSB A;  4BD8 A;  4BDU A;  1PQ0 A;  2XPX A;  2XA0 A;  1AF3 A;  2WH6 A;  2VOG A;  2VOH A;  1WSX A;  4S0O A;  4BPJ A;  4YK9 A;  1R2D A;  3QBR A;  1R2E A;  1G5M A;  2KUA A;  2IMS A;  2O2F A;  4ZIE A;  3ILC A;  2VOI A;  3IIG A;  1F16 A;  4ZBI A;  1MK3 A;  2V6Q A;  4HW3 A;  1ZY3 A;  4BD2 A;  3IHE A;  3WIY A;  5IF4 A;  3MK8 A;  1YSI A;  3I1H A;  4MI8 A;  1YSW A;  4K5B C;  2O22 A;  2YV6 A;  3DVU A;  3IHD A;  4ZEQ A;  2W3L A;  4OQ5 A;  4HW2 A;  2JM6 B;  4G35 A;  1R2G A;  1OHU A;  1MAZ A;  1TY4 A;  5C6H A;  2LR1 A; 
#chains in the Genus database with same CATH topology
 1GJH A;  4LQK A;  4WMR A;  1LXL A;  4BPI A;  4ZII A;  2M5B A;  5IEZ A;  5FC4 A;  3IO9 A;  2I39 A;  2JCN A;  2PQK A;  5KTG A;  3IHC A;  4HW4 A;  4YJ4 A;  2IMT A;  1PQ1 A;  2VVY A;  4BD7 A;  3PK1 A;  2VM6 A;  3CVA X;  5C3F A;  1K3K A;  3WIX A;  4S0P A;  4ZIG A;  3D7V A;  4ZBF A;  5FDR A;  1R2H A;  3MQP A;  4U2U A;  4D2L A;  2VOF A;  4OYD A;  1G5J A;  2ME8 A;  2MHS A;  1R2I A;  3IIH A;  5FDO A;  3KJ1 A;  2K7W A;  4ZIF A;  2O2M A;  2KBW A;  4B4S A;  1YSN A;  2ABO A;  2ROC A;  1YSG A;  2BZW A;  3KJ2 A;  1BXL A;  5FMI A;  2A5Y A;  1O0L A;  3BL2 A;  3KJ0 A;  4D2M A;  2B48 A;  2NL9 A;  2JBX A;  2O42 A;  1DDB A;  4UF2 A;  2K36 A;  2O2N A;  4ZIH A;  1Q59 A;  4OQ6 A;  2NLA A;  2MEJ A;  4U2V A;  4BD6 A;  2ROD A;  2BID A;  5KU9 A;  2O21 A;  4QVX A;  3KZ0 A;  4QNQ A;  5JSB A;  4BD8 A;  4BDU A;  1PQ0 A;  2XPX A;  2XA0 A;  1AF3 A;  2WH6 A;  3JRV A;  2VOG A;  2VOH A;  2VTY A;  1WSX A;  4S0O A;  4BPJ A;  4YK9 A;  1R2D A;  3QBR A;  1R2E A;  1G5M A;  2VVX A;  2KUA A;  4BBD A;  2IMS A;  2JBY A;  2O2F A;  4ZIE A;  4UF3 A;  4UF1 A;  3ILC A;  2VOI A;  2UXE A;  3IIG A;  1F16 A;  4ZBI A;  1MK3 A;  2V6Q A;  4HW3 A;  1ZY3 A;  4BD2 A;  3IHE A;  3WIY A;  5IF4 A;  3MK8 A;  1YSI A;  3I1H A;  4MI8 A;  1YSW A;  2VVW A;  4K5B C;  2O22 A;  2YV6 A;  3DVU A;  3IHD A;  4ZEQ A;  2W3L A;  4OQ5 A;  4BBB A;  4HW2 A;  2JM6 B;  4G35 A;  1R2G A;  1OHU A;  4M0S A;  1MAZ A;  1TY4 A;  4BBC A;  5C6H A;  2LR1 A; 
#chains in the Genus database with same CATH homology
 1GJH A;  4WMR A;  1LXL A;  4BPI A;  4ZII A;  2M5B A;  5IEZ A;  5FC4 A;  3IO9 A;  2JCN A;  2PQK A;  5KTG A;  3IHC A;  4HW4 A;  4YJ4 A;  2IMT A;  1PQ1 A;  4BD7 A;  3PK1 A;  2VM6 A;  3CVA X;  5C3F A;  1K3K A;  3WIX A;  4S0P A;  4ZIG A;  3D7V A;  4ZBF A;  5FDR A;  1R2H A;  3MQP A;  4U2U A;  2VOF A;  4OYD A;  1G5J A;  2ME8 A;  2MHS A;  1R2I A;  3IIH A;  5FDO A;  3KJ1 A;  2K7W A;  4ZIF A;  2O2M A;  2KBW A;  4B4S A;  1YSN A;  2ABO A;  2ROC A;  1YSG A;  2BZW A;  3KJ2 A;  1BXL A;  5FMI A;  2A5Y A;  1O0L A;  3BL2 A;  3KJ0 A;  2B48 A;  2NL9 A;  1DDB A;  2O2N A;  4ZIH A;  1Q59 A;  4OQ6 A;  2NLA A;  2MEJ A;  4U2V A;  4BD6 A;  2ROD A;  2BID A;  5KU9 A;  2O21 A;  4QVX A;  3KZ0 A;  4QNQ A;  5JSB A;  4BD8 A;  4BDU A;  1PQ0 A;  2XPX A;  2XA0 A;  1AF3 A;  2WH6 A;  2VOG A;  2VOH A;  1WSX A;  4S0O A;  4BPJ A;  4YK9 A;  1R2D A;  3QBR A;  1R2E A;  1G5M A;  2KUA A;  2IMS A;  2O2F A;  4ZIE A;  3ILC A;  2VOI A;  3IIG A;  1F16 A;  4ZBI A;  1MK3 A;  2V6Q A;  4HW3 A;  1ZY3 A;  4BD2 A;  3IHE A;  3WIY A;  5IF4 A;  3MK8 A;  1YSI A;  3I1H A;  4MI8 A;  1YSW A;  4K5B C;  2O22 A;  2YV6 A;  3DVU A;  3IHD A;  4ZEQ A;  2W3L A;  4OQ5 A;  4HW2 A;  2JM6 B;  4G35 A;  1R2G A;  1OHU A;  1MAZ A;  1TY4 A;  5C6H A;  2LR1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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