5FQ2B

Crystal structure of human sumo e1 ufd domain in complex with ubc9 in a p422 space group.
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
101
structure length
100
Chain Sequence
KPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords SUMO-CONJUGATING ENZYME UBC9
publication title Crystal Structure of Human Sumo E1 Ufd Domain in Complex with Ubc9.
rcsb
source organism Homo sapiens
molecule tags Ligase
total genus 25
structure length 100
sequence length 101
ec nomenclature ec 6.3.2.-:
pdb deposition date 2015-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF14732 UAE_UbL Ubiquitin/SUMO-activating enzyme ubiquitin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.20 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 5fq2B00
3KYDB 1Y8XB 4W5VB 2LQ7A 1Y8QB 3FN1A 3KYCB 3ONGA 2NVUB 5FQ2B 1Y8RB 3ONHA
chains in the Genus database with same CATH superfamily
5BR8D 2VQED 4X66D 3DH3A 1JH3A 1H3FA 5LMUD 2UXBD 5LMND 3OTOD 1KSKA 1Y8XB 2K6PA 1KSVA 2KTLA 4OUDA 3ONGA 4LFAD 1I94D 1XNRD 1N33D 5FLXE 3KBGA 4DV3D 4DR7D 4DUZD 4DV7D 4AQYD 4II2A 4DUYD 2ISTA 3KYDB 2UU9D 4NXMD 4NNJA 4JI2D 4OX9D 4W5VB 4DR5D 4YY3D 2NVUB 4JI4D 3JAME 4LF9D 4II3A 2UUCD 4JI7D 4GKKD 4DR4D 1J5ED 4X62D 4JI5D 1H3EA 4DR6D 1KSLA 5KNLA 2VQFD 4DV1D 4LFCD 3KYCB 1HNWD 2UUBD 4X64D 2ZM6D 5A2QE 3J81E 1N32D 5FQ2B 4B3MD 2HHHD 1DM9A 4B3TD 1IBMD 4DV6D 3J7AF 2UXCD 1XMQD 4LGTA 1Y8RB 3ONHA 1HNXD 2UUAD 5LL6S 5IWAD 1N36D 2LQ7A 2ZTBA 4NXND 4YHHD 4DR3D 1C05A 1HNZD 4JYAD 3HP7A 4LF5D 4JI3D 2F4VD 1XNQD 4DV2D 4JI6D 4LF4D 2I1SA 1HR0D 4DR2D 4K0KD 1XMOD 4B3RD 4DV0D 3J80E 5IT9E 4B3SD 4JI8D 4KHPD 1FJGD 4LF7D 4JI0D 4DR1D 1N34D 4LF8D 3FN1A 4LFBD 1FKAD 4JI1D 2JANA 4X65D 1IBLD 1Y8QB 3T1HD 1IBKD 2UXDD 4JV5D 4DV4D 1VIOA 4GKJD 1P9KA 4DV5D 4LF6D 3T1YD 3CMMA 1C06A 2E5LD
chains in the Genus database with same CATH topology
3KYDB 1Y8XB 4W5VB 2LQ7A 1Y8QB 3FN1A 3KYCB 3ONGA 2NVUB 5FQ2B 1Y8RB 3ONHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KYD B;  1Y8X B;  4W5V B;  2LQ7 A;  1Y8Q B;  3FN1 A;  3KYC B;  3ONG A;  2NVU B;  5FQ2 B;  1Y8R B;  3ONH A; 
#chains in the Genus database with same CATH topology
 5BR8 D;  2VQE D;  4X66 D;  3DH3 A;  1JH3 A;  1H3F A;  5LMU D;  2UXB D;  5LMN D;  3OTO D;  1KSK A;  1Y8X B;  2K6P A;  1KSV A;  2KTL A;  4OUD A;  3ONG A;  4LFA D;  1I94 D;  1XNR D;  1N33 D;  5FLX E;  3KBG A;  4DV3 D;  4DR7 D;  4DUZ D;  4DV7 D;  4AQY D;  4II2 A;  4DUY D;  2IST A;  3KYD B;  2UU9 D;  4NXM D;  4NNJ A;  4JI2 D;  4OX9 D;  4W5V B;  4DR5 D;  4YY3 D;  2NVU B;  4JI4 D;  3JAM E;  4LF9 D;  4II3 A;  2UUC D;  4JI7 D;  4GKK D;  4DR4 D;  1J5E D;  4X62 D;  4JI5 D;  1H3E A;  4DR6 D;  1KSL A;  5KNL A;  2VQF D;  4DV1 D;  4LFC D;  3KYC B;  1HNW D;  2UUB D;  4X64 D;  2ZM6 D;  5A2Q E;  3J81 E;  1N32 D;  5FQ2 B;  4B3M D;  2HHH D;  1DM9 A;  4B3T D;  1IBM D;  4DV6 D;  3J7A F;  2UXC D;  1XMQ D;  4LGT A;  1Y8R B;  3ONH A;  1HNX D;  2UUA D;  5LL6 S;  5IWA D;  1N36 D;  2LQ7 A;  2ZTB A;  4NXN D;  4YHH D;  4DR3 D;  1C05 A;  1HNZ D;  4JYA D;  3HP7 A;  4LF5 D;  4JI3 D;  2F4V D;  1XNQ D;  4DV2 D;  4JI6 D;  4LF4 D;  2I1S A;  1HR0 D;  4DR2 D;  4K0K D;  1XMO D;  4B3R D;  4DV0 D;  3J80 E;  5IT9 E;  4B3S D;  4JI8 D;  4KHP D;  1FJG D;  4LF7 D;  4JI0 D;  4DR1 D;  1N34 D;  4LF8 D;  3FN1 A;  4LFB D;  1FKA D;  4JI1 D;  2JAN A;  4X65 D;  1IBL D;  1Y8Q B;  3T1H D;  1IBK D;  2UXD D;  4JV5 D;  4DV4 D;  1VIO A;  4GKJ D;  1P9K A;  4DV5 D;  4LF6 D;  3T1Y D;  3CMM A;  1C06 A;  2E5L D; 
#chains in the Genus database with same CATH homology
 3KYD B;  1Y8X B;  4W5V B;  2LQ7 A;  1Y8Q B;  3FN1 A;  3KYC B;  3ONG A;  2NVU B;  5FQ2 B;  1Y8R B;  3ONH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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