5FSEB

2.07 a resolution 1,4-benzoquinone inhibited sporosarcina pasteurii urease
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
122
structure length
122
Chain Sequence
NYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE SUBUNIT GAMMA
publication title Inactivation of Urease by 1,4-Benzoquinone: Chemistry at the Protein Surface.
pubmed doi rcsb
total genus 29
structure length 122
sequence length 122
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2016-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 5fseB00
1A5KB 1UBPB 4EP8B 4CEXB 1FWIB 5FSEB 1S3TB 1EJWB 3QGKA 4GY7A 1EJSB 5G4HB 1E9ZA 1FWBB 1KRBB 1FWEB 1EJUB 1EF2B 4G7EB 1A5MB 1A5LB 1A5OB 1EJTB 1A5NB 1EJRB 1IE7B 4GOAA 5FSDB 1KRAB 4UBPB 3UBPB 4H9MA 4Z42B 4AC7B 4EPEB 2KAUB 1KRCB 1FWAB 1FWJB 1FWGB 2UBPB 1E9YA 4G7EA 4CEUB 1FWDB 4EPBB 1FWCB 3QGAA 4EPDB 1FWFB 1FWHB 1EJVB 3LA4A 1EJXB 5A6TB
chains in the Genus database with same CATH superfamily
1A5KB 1UBPB 4EP8B 4CEXB 1FWIB 5FSEB 1S3TB 1EJWB 3QGKA 4GY7A 1EJSB 5G4HB 1E9ZA 1FWBB 1KRBB 1FWEB 1EJUB 1EF2B 4G7EB 1A5MB 1A5LB 1A5OB 1EJTB 1A5NB 1EJRB 1IE7B 4GOAA 5FSDB 1KRAB 4UBPB 3UBPB 4H9MA 4Z42B 4AC7B 4EPEB 2KAUB 1KRCB 1FWAB 1FWJB 1FWGB 2UBPB 1E9YA 4G7EA 4CEUB 1FWDB 4EPBB 1FWCB 3QGAA 4EPDB 1FWFB 1FWHB 1EJVB 3LA4A 1EJXB 5A6TB
chains in the Genus database with same CATH topology
1A5KB 1UBPB 4EP8B 4CEXB 1FWIB 5FSEB 1S3TB 1EJWB 3QGKA 4GY7A 1EJSB 5G4HB 1E9ZA 1FWBB 1KRBB 1FWEB 1EJUB 1EF2B 4G7EB 1A5MB 1A5LB 1A5OB 1EJTB 1A5NB 1EJRB 1IE7B 4GOAA 5FSDB 1KRAB 4UBPB 3UBPB 4H9MA 4Z42B 4AC7B 4EPEB 2KAUB 1KRCB 1FWAB 1FWJB 1FWGB 2UBPB 1E9YA 4G7EA 4CEUB 1FWDB 4EPBB 1FWCB 3QGAA 4EPDB 1FWFB 1FWHB 1EJVB 3LA4A 1EJXB 5A6TB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A5K B;  1UBP B;  4EP8 B;  4CEX B;  1FWI B;  5FSE B;  1S3T B;  1EJW B;  3QGK A;  4GY7 A;  1EJS B;  5G4H B;  1E9Z A;  1FWB B;  1KRB B;  1FWE B;  1EJU B;  1EF2 B;  4G7E B;  1A5M B;  1A5L B;  1A5O B;  1EJT B;  1A5N B;  1EJR B;  1IE7 B;  4GOA A;  5FSD B;  1KRA B;  4UBP B;  3UBP B;  4H9M A;  4Z42 B;  4AC7 B;  4EPE B;  2KAU B;  1KRC B;  1FWA B;  1FWJ B;  1FWG B;  2UBP B;  1E9Y A;  4G7E A;  4CEU B;  1FWD B;  4EPB B;  1FWC B;  3QGA A;  4EPD B;  1FWF B;  1FWH B;  1EJV B;  3LA4 A;  1EJX B;  5A6T B; 
#chains in the Genus database with same CATH topology
 1A5K B;  1UBP B;  4EP8 B;  4CEX B;  1FWI B;  5FSE B;  1S3T B;  1EJW B;  3QGK A;  4GY7 A;  1EJS B;  5G4H B;  1E9Z A;  1FWB B;  1KRB B;  1FWE B;  1EJU B;  1EF2 B;  4G7E B;  1A5M B;  1A5L B;  1A5O B;  1EJT B;  1A5N B;  1EJR B;  1IE7 B;  4GOA A;  5FSD B;  1KRA B;  4UBP B;  3UBP B;  4H9M A;  4Z42 B;  4AC7 B;  4EPE B;  2KAU B;  1KRC B;  1FWA B;  1FWJ B;  1FWG B;  2UBP B;  1E9Y A;  4G7E A;  4CEU B;  1FWD B;  4EPB B;  1FWC B;  3QGA A;  4EPD B;  1FWF B;  1FWH B;  1EJV B;  3LA4 A;  1EJX B;  5A6T B; 
#chains in the Genus database with same CATH homology
 1A5K B;  1UBP B;  4EP8 B;  4CEX B;  1FWI B;  5FSE B;  1S3T B;  1EJW B;  3QGK A;  4GY7 A;  1EJS B;  5G4H B;  1E9Z A;  1FWB B;  1KRB B;  1FWE B;  1EJU B;  1EF2 B;  4G7E B;  1A5M B;  1A5L B;  1A5O B;  1EJT B;  1A5N B;  1EJR B;  1IE7 B;  4GOA A;  5FSD B;  1KRA B;  4UBP B;  3UBP B;  4H9M A;  4Z42 B;  4AC7 B;  4EPE B;  2KAU B;  1KRC B;  1FWA B;  1FWJ B;  1FWG B;  2UBP B;  1E9Y A;  4G7E A;  4CEU B;  1FWD B;  4EPB B;  1FWC B;  3QGA A;  4EPD B;  1FWF B;  1FWH B;  1EJV B;  3LA4 A;  1EJX B;  5A6T B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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