5FSUA

Crystal structure of trypanosoma brucei macrodomain (crystal form 1)
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
251
structure length
235
Chain Sequence
PFEFVTYSGEESSPTRTRILSAALSPAERAIFDVPIEKWLSIDRSSLSGWKCAVPRPVTIEQLRPVDPSDAILRHIALYRGPVTDLQLDAIVNAANTRCLGGGGVDGAIHRVAGPLLLRECATFNGCQTGECRLTKGYQLPARYVLHTVGPVGERPDMLRKCYRSILSLALKNGLRSIGFCCVSTGVYGYPLLPATRIALGETRKFLEEHGGALDMCCFACFQEDEYKTYEKCVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords MACRODOMAIN
publication title Proximal Adp-Ribose Hydrolysis in Trypanosomatids is Catalyzed by a Macrodomain.
pubmed doi rcsb
source organism Trypanosoma brucei
total genus 77
structure length 235
sequence length 251
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 5fsuA00
5FSXA 4GUAA 1BPNA 2FG1A 5HIHA 4ZI6A 2BFRA 1BPMA 2EWBA 4R6TA 3KQXA 4JCAA 1LAMA 2J9AA 4KYBA 3SIJA 2ACFA 2XD7A 5D8NA 1LCPA 3H8FA 3JZTA 3V45A 3T8WA 3ETIA 4KSIA 3GPOA 3EKEA 3GPGA 2X47A 3EJFA 3KZWA 4R7MA 4ETKA 3H8EA 4GVWA 3IIFA 3SIIA 4IQYA 2VRIA 3SIGA 4R76A 5CB3A 4JLLA 3GQEA 3PEIA 4K3NA 3EWPA 4ZY2A 4J5SA 3EWOA 2LGRA 4J5QA 1LANA 4ABLA 3V2BA 3IJ3A 5HOLA 1TXZA 2FAVA 3Q6ZA 1ZR5A 5DUSA 4ZX9A 1VHUA 2DX6A 2EEEA 3KR4A 2AFCA 5AILA 3EW5A 1HJZA 3EWQA 5E3BA 1BLLE 5FSZA 5FSYA 3KR5A 4ZY0A 3Q71A 1SPVA 5FSUA 1ZR3A 1YD9A 1GYTA 4ZX8A 4GVVA 3EWRA 5CMSA 4JGKA 4ZY1A 3IIDA 3EJGA 1TY8A 4K0CA 4ETJA 2L8RA 3GQOA 5CB5A 4D86A 3VFQA 5FSVA 4J5RA 5CBMA 4ABKA 4X2TA 4JVVA 4J4ZA 2FXKA 4UMLA 3H8GA 3SIHA 2BFQA 4ZYQA 4ESSA 4TU0A 3JRUA 1LAPA 3GPQA 3KQZA 1NJRA
chains in the Genus database with same CATH superfamily
5FSXA 4GUAA 1BPNA 2FG1A 5HIHA 4ZI6A 2BFRA 1BPMA 2EWBA 4R6TA 3KQXA 4JCAA 1LAMA 2J9AA 4KYBA 2WCTA 3SIJA 2ACFA 2XD7A 5D8NA 1LCPA 3H8FA 3JZTA 3V45A 3T8WA 3ETIA 4KSIA 3GPOA 3EKEA 3GPGA 2X47A 3EJFA 3KZWA 4R7MA 2JZFA 4ETKA 3H8EA 4GVWA 3IIFA 2JZEA 3SIIA 4IQYA 2VRIA 3SIGA 4R76A 5CB3A 4JLLA 3GQEA 2KQVA 3PEIA 4K3NA 3EWPA 4ZY2A 4J5SA 3EWOA 2LGRA 4J5QA 1LANA 4ABLA 3V2BA 3IJ3A 5HOLA 2RNKA 1TXZA 2FAVA 3Q6ZA 1ZR5A 5DUSA 4ZX9A 1VHUA 2DX6A 2EEEA 3KR4A 2AFCA 5AILA 3EW5A 1HJZA 3EWQA 5E3BA 1BLLE 2JZDA 5FSZA 5FSYA 3KR5A 4ZY0A 3Q71A 1SPVA 5FSUA 1ZR3A 1YD9A 1GYTA 4ZX8A 4GVVA 3EWRA 5CMSA 4JGKA 4ZY1A 3IIDA 3EJGA 1TY8A 4K0CA 4ETJA 2L8RA 3GQOA 5CB5A 4D86A 3VFQA 5FSVA 4J5RA 5CBMA 4ABKA 4X2TA 4JVVA 4J4ZA 2FXKA 4UMLA 2W2GA 3H8GA 3SIHA 2BFQA 4ZYQA 4ESSA 4TU0A 3JRUA 1LAPA 3GPQA 3KQZA 1NJRA
chains in the Genus database with same CATH topology
5FSXA 4GUAA 1BPNA 2FG1A 5HIHA 4ZI6A 2BFRA 1BPMA 2EWBA 4R6TA 3KQXA 4JCAA 1LAMA 2J9AA 4KYBA 3SIJA 2ACFA 2XD7A 5D8NA 1LCPA 3H8FA 3JZTA 3V45A 3T8WA 3ETIA 4KSIA 3GPOA 3EKEA 3GPGA 2X47A 3EJFA 3KZWA 4R7MA 4ETKA 3H8EA 4GVWA 3IIFA 3SIIA 4IQYA 2VRIA 3SIGA 4R76A 5CB3A 4JLLA 3GQEA 3PEIA 4K3NA 3EWPA 4ZY2A 4J5SA 3EWOA 2LGRA 4J5QA 1LANA 4ABLA 3V2BA 3IJ3A 5HOLA 1TXZA 2FAVA 3Q6ZA 1ZR5A 5DUSA 4ZX9A 1VHUA 2DX6A 2EEEA 3KR4A 2AFCA 5AILA 3EW5A 1HJZA 3EWQA 5E3BA 1BLLE 5FSZA 5FSYA 3KR5A 4ZY0A 3Q71A 1SPVA 5FSUA 1ZR3A 1YD9A 1GYTA 4ZX8A 4GVVA 3EWRA 5CMSA 4JGKA 4ZY1A 3IIDA 3EJGA 1TY8A 4K0CA 4ETJA 2L8RA 3GQOA 5CB5A 4D86A 3VFQA 5FSVA 4J5RA 5CBMA 4ABKA 4X2TA 4JVVA 4J4ZA 2FXKA 4UMLA 3H8GA 3SIHA 2BFQA 4ZYQA 4ESSA 4TU0A 3JRUA 1LAPA 3GPQA 3KQZA 1NJRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FSX A;  4GUA A;  1BPN A;  2FG1 A;  5HIH A;  4ZI6 A;  2BFR A;  1BPM A;  2EWB A;  4R6T A;  3KQX A;  4JCA A;  1LAM A;  2J9A A;  4KYB A;  3SIJ A;  2ACF A;  2XD7 A;  5D8N A;  1LCP A;  3H8F A;  3JZT A;  3V45 A;  3T8W A;  3ETI A;  4KSI A;  3GPO A;  3EKE A;  3GPG A;  2X47 A;  3EJF A;  3KZW A;  4R7M A;  4ETK A;  3H8E A;  4GVW A;  3IIF A;  3SII A;  4IQY A;  2VRI A;  3SIG A;  4R76 A;  5CB3 A;  4JLL A;  3GQE A;  3PEI A;  4K3N A;  3EWP A;  4ZY2 A;  4J5S A;  3EWO A;  2LGR A;  4J5Q A;  1LAN A;  4ABL A;  3V2B A;  3IJ3 A;  5HOL A;  1TXZ A;  2FAV A;  3Q6Z A;  1ZR5 A;  5DUS A;  4ZX9 A;  1VHU A;  2DX6 A;  2EEE A;  3KR4 A;  2AFC A;  5AIL A;  3EW5 A;  1HJZ A;  3EWQ A;  5E3B A;  1BLL E;  5FSZ A;  5FSY A;  3KR5 A;  4ZY0 A;  3Q71 A;  1SPV A;  5FSU A;  1ZR3 A;  1YD9 A;  1GYT A;  4ZX8 A;  4GVV A;  3EWR A;  5CMS A;  4JGK A;  4ZY1 A;  3IID A;  3EJG A;  1TY8 A;  4K0C A;  4ETJ A;  2L8R A;  3GQO A;  5CB5 A;  4D86 A;  3VFQ A;  5FSV A;  4J5R A;  5CBM A;  4ABK A;  4X2T A;  4JVV A;  4J4Z A;  2FXK A;  4UML A;  3H8G A;  3SIH A;  2BFQ A;  4ZYQ A;  4ESS A;  4TU0 A;  3JRU A;  1LAP A;  3GPQ A;  3KQZ A;  1NJR A; 
#chains in the Genus database with same CATH topology
 5FSX A;  4GUA A;  1BPN A;  2FG1 A;  5HIH A;  4ZI6 A;  2BFR A;  1BPM A;  2EWB A;  4R6T A;  3KQX A;  4JCA A;  1LAM A;  2J9A A;  4KYB A;  2WCT A;  3SIJ A;  2ACF A;  2XD7 A;  5D8N A;  1LCP A;  3H8F A;  3JZT A;  3V45 A;  3T8W A;  3ETI A;  4KSI A;  3GPO A;  3EKE A;  3GPG A;  2X47 A;  3EJF A;  3KZW A;  4R7M A;  2JZF A;  4ETK A;  3H8E A;  4GVW A;  3IIF A;  2JZE A;  3SII A;  4IQY A;  2VRI A;  3SIG A;  4R76 A;  5CB3 A;  4JLL A;  3GQE A;  2KQV A;  3PEI A;  4K3N A;  3EWP A;  4ZY2 A;  4J5S A;  3EWO A;  2LGR A;  4J5Q A;  1LAN A;  4ABL A;  3V2B A;  3IJ3 A;  5HOL A;  2RNK A;  1TXZ A;  2FAV A;  3Q6Z A;  1ZR5 A;  5DUS A;  4ZX9 A;  1VHU A;  2DX6 A;  2EEE A;  3KR4 A;  2AFC A;  5AIL A;  3EW5 A;  1HJZ A;  3EWQ A;  5E3B A;  1BLL E;  2JZD A;  5FSZ A;  5FSY A;  3KR5 A;  4ZY0 A;  3Q71 A;  1SPV A;  5FSU A;  1ZR3 A;  1YD9 A;  1GYT A;  4ZX8 A;  4GVV A;  3EWR A;  5CMS A;  4JGK A;  4ZY1 A;  3IID A;  3EJG A;  1TY8 A;  4K0C A;  4ETJ A;  2L8R A;  3GQO A;  5CB5 A;  4D86 A;  3VFQ A;  5FSV A;  4J5R A;  5CBM A;  4ABK A;  4X2T A;  4JVV A;  4J4Z A;  2FXK A;  4UML A;  2W2G A;  3H8G A;  3SIH A;  2BFQ A;  4ZYQ A;  4ESS A;  4TU0 A;  3JRU A;  1LAP A;  3GPQ A;  3KQZ A;  1NJR A; 
#chains in the Genus database with same CATH homology
 5FSX A;  4GUA A;  1BPN A;  2FG1 A;  5HIH A;  4ZI6 A;  2BFR A;  1BPM A;  2EWB A;  4R6T A;  3KQX A;  4JCA A;  1LAM A;  2J9A A;  4KYB A;  3SIJ A;  2ACF A;  2XD7 A;  5D8N A;  1LCP A;  3H8F A;  3JZT A;  3V45 A;  3T8W A;  3ETI A;  4KSI A;  3GPO A;  3EKE A;  3GPG A;  2X47 A;  3EJF A;  3KZW A;  4R7M A;  4ETK A;  3H8E A;  4GVW A;  3IIF A;  3SII A;  4IQY A;  2VRI A;  3SIG A;  4R76 A;  5CB3 A;  4JLL A;  3GQE A;  3PEI A;  4K3N A;  3EWP A;  4ZY2 A;  4J5S A;  3EWO A;  2LGR A;  4J5Q A;  1LAN A;  4ABL A;  3V2B A;  3IJ3 A;  5HOL A;  1TXZ A;  2FAV A;  3Q6Z A;  1ZR5 A;  5DUS A;  4ZX9 A;  1VHU A;  2DX6 A;  2EEE A;  3KR4 A;  2AFC A;  5AIL A;  3EW5 A;  1HJZ A;  3EWQ A;  5E3B A;  1BLL E;  5FSZ A;  5FSY A;  3KR5 A;  4ZY0 A;  3Q71 A;  1SPV A;  5FSU A;  1ZR3 A;  1YD9 A;  1GYT A;  4ZX8 A;  4GVV A;  3EWR A;  5CMS A;  4JGK A;  4ZY1 A;  3IID A;  3EJG A;  1TY8 A;  4K0C A;  4ETJ A;  2L8R A;  3GQO A;  5CB5 A;  4D86 A;  3VFQ A;  5FSV A;  4J5R A;  5CBM A;  4ABK A;  4X2T A;  4JVV A;  4J4Z A;  2FXK A;  4UML A;  3H8G A;  3SIH A;  2BFQ A;  4ZYQ A;  4ESS A;  4TU0 A;  3JRU A;  1LAP A;  3GPQ A;  3KQZ A;  1NJR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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