5FSVA

Crystal structure of trypanosoma brucei macrodomain (crystal form 2)
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
249
structure length
232
Chain Sequence
EFVTYSGEESPTRTRILSAALSPAERAIFDVPIEKWLSIDRSSLSGWKCAVPRPVTIEQLRPVDPSDAILRHIALYRGPVTDLQLDAIVNAANTRCLGGGGVDGAIHRVAGPLLLRECATFNGCQTGECRLTKGYQLPARYVLHTVGPVGERPDMLRKCYRSILSLALKNGLRSIGFCCVSTGVYGYPLLPATRIALGETRKFLEEHGGALDMCCFACFQEDEYKTYEKCVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords MACRODOMAIN
publication title Proximal Adp-Ribose Hydrolysis in Trypanosomatids is Catalyzed by a Macrodomain.
pubmed doi rcsb
source organism Trypanosoma brucei
total genus 86
structure length 232
sequence length 249
ec nomenclature
pdb deposition date 2016-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 5fsvA00
1HJZA 1NJRA 5CMSA 1LCPA 4J5QA 5HOLA 5CB5A 1ZR5A 4GUAA 1BLLE 3EWPA 4K0CA 4R6TA 5E3BA 3KQXA 2FXKA 3EJGA 1BPNA 3V2BA 4R76A 2EEEA 4ZX8A 4D86A 4J5SA 2FAVA 4J4ZA 3IIDA 5FSUA 5FSVA 3EWRA 3SIIA 3PEIA 5HIHA 1LANA 1VHUA 1ZR3A 5D8NA 2BFQA 4JGKA 4ETKA 3V45A 4ABKA 4R7MA 5AILA 4JCAA 3EJFA 2XD7A 4ESSA 4TU0A 1LAMA 5FSXA 3KR5A 5DUSA 1LAPA 4UMLA 2J9AA 4X2TA 2LGRA 3EW5A 2X47A 3KZWA 5FSYA 1TY8A 4JVVA 1TXZA 5FSZA 4ZY2A 1SPVA 4K3NA 4ZYQA 1YD9A 3KR4A 4GVWA 4KSIA 5CBMA 4J5RA 3EWQA 4ABLA 2FG1A 2DX6A 4ZX9A 4GVVA 2L8RA 4ZY1A 3KQZA 2AFCA 3GPQA 3SIJA 4IQYA 1BPMA 3Q6ZA 4KYBA 4JLLA 1GYTA 3ETIA 4ZY0A 2EWBA 3H8FA 3EWOA 3GQEA 3IJ3A 3GQOA 3EKEA 3JZTA 3Q71A 2ACFA 2BFRA 3GPOA 3SIHA 3H8GA 5CB3A 2VRIA 4ZI6A 3IIFA 3VFQA 3SIGA 3H8EA 4ETJA 3T8WA 3GPGA 3JRUA
chains in the Genus database with same CATH superfamily
1HJZA 1NJRA 5CMSA 1LCPA 4J5QA 5HOLA 5CB5A 1ZR5A 4GUAA 1BLLE 3EWPA 4K0CA 4R6TA 5E3BA 3KQXA 2FXKA 3EJGA 1BPNA 3V2BA 4R76A 2EEEA 4ZX8A 4D86A 4J5SA 2FAVA 4J4ZA 3IIDA 5FSUA 5FSVA 3EWRA 3SIIA 3PEIA 5HIHA 1LANA 2JZDA 1VHUA 1ZR3A 5D8NA 2BFQA 4JGKA 4ETKA 3V45A 4ABKA 4R7MA 5AILA 4JCAA 3EJFA 2XD7A 4ESSA 4TU0A 1LAMA 2W2GA 5FSXA 3KR5A 5DUSA 2JZEA 1LAPA 4UMLA 2J9AA 4X2TA 2LGRA 3EW5A 2X47A 3KZWA 5FSYA 1TY8A 4JVVA 1TXZA 5FSZA 4ZY2A 1SPVA 4K3NA 4ZYQA 1YD9A 3KR4A 4GVWA 4KSIA 5CBMA 4J5RA 3EWQA 4ABLA 2WCTA 2FG1A 2DX6A 4ZX9A 2JZFA 4GVVA 2L8RA 4ZY1A 3KQZA 2AFCA 3GPQA 3SIJA 4IQYA 1BPMA 3Q6ZA 4KYBA 4JLLA 1GYTA 3ETIA 4ZY0A 2EWBA 3H8FA 3EWOA 3GQEA 2RNKA 3IJ3A 3GQOA 3EKEA 3JZTA 3Q71A 2ACFA 2BFRA 3GPOA 3SIHA 3H8GA 5CB3A 2VRIA 4ZI6A 3IIFA 3VFQA 3SIGA 3H8EA 4ETJA 3T8WA 3GPGA 2KQVA 3JRUA
chains in the Genus database with same CATH topology
1HJZA 1NJRA 5CMSA 1LCPA 4J5QA 5HOLA 5CB5A 1ZR5A 4GUAA 1BLLE 3EWPA 4K0CA 4R6TA 5E3BA 3KQXA 2FXKA 3EJGA 1BPNA 3V2BA 4R76A 2EEEA 4ZX8A 4D86A 4J5SA 2FAVA 4J4ZA 3IIDA 5FSUA 5FSVA 3EWRA 3SIIA 3PEIA 5HIHA 1LANA 1VHUA 1ZR3A 5D8NA 2BFQA 4JGKA 4ETKA 3V45A 4ABKA 4R7MA 5AILA 4JCAA 3EJFA 2XD7A 4ESSA 4TU0A 1LAMA 5FSXA 3KR5A 5DUSA 1LAPA 4UMLA 2J9AA 4X2TA 2LGRA 3EW5A 2X47A 3KZWA 5FSYA 1TY8A 4JVVA 1TXZA 5FSZA 4ZY2A 1SPVA 4K3NA 4ZYQA 1YD9A 3KR4A 4GVWA 4KSIA 5CBMA 4J5RA 3EWQA 4ABLA 2FG1A 2DX6A 4ZX9A 4GVVA 2L8RA 4ZY1A 3KQZA 2AFCA 3GPQA 3SIJA 4IQYA 1BPMA 3Q6ZA 4KYBA 4JLLA 1GYTA 3ETIA 4ZY0A 2EWBA 3H8FA 3EWOA 3GQEA 3IJ3A 3GQOA 3EKEA 3JZTA 3Q71A 2ACFA 2BFRA 3GPOA 3SIHA 3H8GA 5CB3A 2VRIA 4ZI6A 3IIFA 3VFQA 3SIGA 3H8EA 4ETJA 3T8WA 3GPGA 3JRUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HJZ A;  1NJR A;  5CMS A;  1LCP A;  4J5Q A;  5HOL A;  5CB5 A;  1ZR5 A;  4GUA A;  1BLL E;  3EWP A;  4K0C A;  4R6T A;  5E3B A;  3KQX A;  2FXK A;  3EJG A;  1BPN A;  3V2B A;  4R76 A;  2EEE A;  4ZX8 A;  4D86 A;  4J5S A;  2FAV A;  4J4Z A;  3IID A;  5FSU A;  5FSV A;  3EWR A;  3SII A;  3PEI A;  5HIH A;  1LAN A;  1VHU A;  1ZR3 A;  5D8N A;  2BFQ A;  4JGK A;  4ETK A;  3V45 A;  4ABK A;  4R7M A;  5AIL A;  4JCA A;  3EJF A;  2XD7 A;  4ESS A;  4TU0 A;  1LAM A;  5FSX A;  3KR5 A;  5DUS A;  1LAP A;  4UML A;  2J9A A;  4X2T A;  2LGR A;  3EW5 A;  2X47 A;  3KZW A;  5FSY A;  1TY8 A;  4JVV A;  1TXZ A;  5FSZ A;  4ZY2 A;  1SPV A;  4K3N A;  4ZYQ A;  1YD9 A;  3KR4 A;  4GVW A;  4KSI A;  5CBM A;  4J5R A;  3EWQ A;  4ABL A;  2FG1 A;  2DX6 A;  4ZX9 A;  4GVV A;  2L8R A;  4ZY1 A;  3KQZ A;  2AFC A;  3GPQ A;  3SIJ A;  4IQY A;  1BPM A;  3Q6Z A;  4KYB A;  4JLL A;  1GYT A;  3ETI A;  4ZY0 A;  2EWB A;  3H8F A;  3EWO A;  3GQE A;  3IJ3 A;  3GQO A;  3EKE A;  3JZT A;  3Q71 A;  2ACF A;  2BFR A;  3GPO A;  3SIH A;  3H8G A;  5CB3 A;  2VRI A;  4ZI6 A;  3IIF A;  3VFQ A;  3SIG A;  3H8E A;  4ETJ A;  3T8W A;  3GPG A;  3JRU A; 
#chains in the Genus database with same CATH topology
 1HJZ A;  1NJR A;  5CMS A;  1LCP A;  4J5Q A;  5HOL A;  5CB5 A;  1ZR5 A;  4GUA A;  1BLL E;  3EWP A;  4K0C A;  4R6T A;  5E3B A;  3KQX A;  2FXK A;  3EJG A;  1BPN A;  3V2B A;  4R76 A;  2EEE A;  4ZX8 A;  4D86 A;  4J5S A;  2FAV A;  4J4Z A;  3IID A;  5FSU A;  5FSV A;  3EWR A;  3SII A;  3PEI A;  5HIH A;  1LAN A;  2JZD A;  1VHU A;  1ZR3 A;  5D8N A;  2BFQ A;  4JGK A;  4ETK A;  3V45 A;  4ABK A;  4R7M A;  5AIL A;  4JCA A;  3EJF A;  2XD7 A;  4ESS A;  4TU0 A;  1LAM A;  2W2G A;  5FSX A;  3KR5 A;  5DUS A;  2JZE A;  1LAP A;  4UML A;  2J9A A;  4X2T A;  2LGR A;  3EW5 A;  2X47 A;  3KZW A;  5FSY A;  1TY8 A;  4JVV A;  1TXZ A;  5FSZ A;  4ZY2 A;  1SPV A;  4K3N A;  4ZYQ A;  1YD9 A;  3KR4 A;  4GVW A;  4KSI A;  5CBM A;  4J5R A;  3EWQ A;  4ABL A;  2WCT A;  2FG1 A;  2DX6 A;  4ZX9 A;  2JZF A;  4GVV A;  2L8R A;  4ZY1 A;  3KQZ A;  2AFC A;  3GPQ A;  3SIJ A;  4IQY A;  1BPM A;  3Q6Z A;  4KYB A;  4JLL A;  1GYT A;  3ETI A;  4ZY0 A;  2EWB A;  3H8F A;  3EWO A;  3GQE A;  2RNK A;  3IJ3 A;  3GQO A;  3EKE A;  3JZT A;  3Q71 A;  2ACF A;  2BFR A;  3GPO A;  3SIH A;  3H8G A;  5CB3 A;  2VRI A;  4ZI6 A;  3IIF A;  3VFQ A;  3SIG A;  3H8E A;  4ETJ A;  3T8W A;  3GPG A;  2KQV A;  3JRU A; 
#chains in the Genus database with same CATH homology
 1HJZ A;  1NJR A;  5CMS A;  1LCP A;  4J5Q A;  5HOL A;  5CB5 A;  1ZR5 A;  4GUA A;  1BLL E;  3EWP A;  4K0C A;  4R6T A;  5E3B A;  3KQX A;  2FXK A;  3EJG A;  1BPN A;  3V2B A;  4R76 A;  2EEE A;  4ZX8 A;  4D86 A;  4J5S A;  2FAV A;  4J4Z A;  3IID A;  5FSU A;  5FSV A;  3EWR A;  3SII A;  3PEI A;  5HIH A;  1LAN A;  1VHU A;  1ZR3 A;  5D8N A;  2BFQ A;  4JGK A;  4ETK A;  3V45 A;  4ABK A;  4R7M A;  5AIL A;  4JCA A;  3EJF A;  2XD7 A;  4ESS A;  4TU0 A;  1LAM A;  5FSX A;  3KR5 A;  5DUS A;  1LAP A;  4UML A;  2J9A A;  4X2T A;  2LGR A;  3EW5 A;  2X47 A;  3KZW A;  5FSY A;  1TY8 A;  4JVV A;  1TXZ A;  5FSZ A;  4ZY2 A;  1SPV A;  4K3N A;  4ZYQ A;  1YD9 A;  3KR4 A;  4GVW A;  4KSI A;  5CBM A;  4J5R A;  3EWQ A;  4ABL A;  2FG1 A;  2DX6 A;  4ZX9 A;  4GVV A;  2L8R A;  4ZY1 A;  3KQZ A;  2AFC A;  3GPQ A;  3SIJ A;  4IQY A;  1BPM A;  3Q6Z A;  4KYB A;  4JLL A;  1GYT A;  3ETI A;  4ZY0 A;  2EWB A;  3H8F A;  3EWO A;  3GQE A;  3IJ3 A;  3GQO A;  3EKE A;  3JZT A;  3Q71 A;  2ACF A;  2BFR A;  3GPO A;  3SIH A;  3H8G A;  5CB3 A;  2VRI A;  4ZI6 A;  3IIF A;  3VFQ A;  3SIG A;  3H8E A;  4ETJ A;  3T8W A;  3GPG A;  3JRU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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