5FXFA

Crystal structure of eugenol oxidase in complex with benzoate
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
molecule keywords EUGENOL OXIDASE
total genus 184
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxfA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxfA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxfA03
5FXEA 3JS8A 4HG0A 1N63C 5HQXA 2R2ZA 2W3SA 4ZOHB 1N62C 1N60C 1E8HA 2RK5A 1FO4A 5D79A 1N61C 4BC9A 1ZXIC 2VAOA 2AXRA 4PVKA 1JRPA 2VFUA 1SB3B 1E8GA 1N5XA 3BW7A 4UD8A 1QLTA 1FFUC 3I99A 5HHZA 3FWAA 3C0PA 3VTEA 3S1CA 3D2DA 3AM9A 1DIQA 1MBBA 3D2HA 2E3TA 2O3GA 1W1JA 1FFVC 3W8ZA 4ML8A 3GSYA 4BBYA 1W1LA 2MBRA 2QKNA 4XLOA 2VFRA 1W1KA 2BVFA 4EC3A 1N5WC 5G5GB 1AHZA 1F0XA 1JROA 3FW8A 4PZFA 3NVYB 4OALA 3AN1A 5AE3A 4JB1A 2BVGA 2YVSA 2VFSA 2PLSA 1T3QC 2I0KA 2QPMA 3DQ0A 5AE2A 3HRDC 3KJMA 1I19A 1MBTA 1W1SA 2GQTA 4BC7A 2R8DA 1WYGA 3SR6B 2Q4WA 3NVWB 1W1MA 3DEDA 1E8FA 3TSJA 3NVVB 1UXYA 2W54A 3TSHA 1V97A 1W1QA 5ADZA 1RM6B 1W1RA 3AMZA 5FXFA 2W55A 3S1FA 4MLAA 1AHVA 2NQWA 1HSKA 1FIQB 2BVHA 3TX1A 3ETRB 5HMRA 2PLIA 3EUB3 2P3HA 3NVZB 3W8XA 4DNSA 3B9JB 5AE1A 4O95A 3S1DA 3FW9A 4PYTA 2P4PA 5FXPA 4PVEA 3NS1B 5G5HB 4BCAA 4PVJA 2Q85A 2OAIA 5FXDA 3W8WA 1WVEA 1AHUA 1W1OA 4JAYA 1ZR6A 2GQUA 2VFTA 2EXRA 4PWBA 2VFVA 3LLBA 1VDVA 3D2JA 1WVFA 3FW7A 2W3RA 4PWCA 3NRZB 3LAEA 1QLUA 1E0YA 4PVHA 3PM9A 2P13A 1DIIA 3S1EA 1VAOA 1DZNA
chains in the Genus database with same CATH superfamily
5FXEA 3JS8A 4HG0A 1N63C 5HQXA 2R2ZA 2W3SA 4ZOHB 1N62C 2Y08A 1N60C 5K8EA 2Y3SA 1E8HA 3EJBB 2RK5A 3RJ8A 1FO4A 5D79A 1N61C 4BC9A 1ZXIC 2VAOA 2AXRA 4PVKA 1JRPA 2VFUA 1SB3B 1E8GA 1N5XA 3BW7A 4UD8A 1QLTA 1FFUC 3I99A 5HHZA 3FWAA 3EJDB 5L6GA 3C0PA 3VTEA 3S1CA 3D2DA 3AM9A 1DIQA 3PQBA 1MBBA 3D2HA 2E3TA 2O3GA 5I1WA 1W1JA 1FFVC 3W8ZA 3POPA 4ML8A 3GSYA 4BBYA 1W1LA 2MBRA 2QKNA 2Y4GA 4XLOA 2VFRA 1W1KA 2BVFA 4EC3A 1N5WC 5G5GB 1AHZA 1F0XA 1JROA 3EJEB 3FW8A 3NVYB 4PZFA 4OALA 3AN1A 5AE3A 4JB1A 2BVGA 2YVSA 3HSUA 2VFSA 2PLSA 1T3QC 2I0KA 2QPMA 3DQ0A 5AE2A 2WDWA 3HRDC 3KJMA 2UUUA 5I1VA 1I19A 1MBTA 1W1SA 2GQTA 4BC7A 2R8DA 1WYGA 3SR6B 2Q4WA 3NVWB 1W1MA 3DEDA 1E8FA 3TSJA 3RJAA 3NVVB 1UXYA 2W54A 5L6FA 3TSHA 1V97A 1W1QA 5ADZA 1RM6B 1W1RA 3AMZA 5FXFA 2W55A 3S1FA 4MLAA 1AHVA 2NQWA 1HSKA 1FIQB 2BVHA 3TX1A 3ETRB 5HMRA 2PLIA 3EUB3 2P3HA 3NVZB 2IPIA 2UUVA 3W8XA 4DNSA 3B9JB 2Y3RA 5AE1A 4O95A 3S1DA 3FW9A 4PYTA 2P4PA 5FXPA 4PVEA 3NS1B 5AWVA 5G5HB 4BCAA 4PVJA 2Q85A 2OAIA 5FXDA 3W8WA 1WVEA 1AHUA 1W1OA 4JAYA 1ZR6A 2GQUA 2VFTA 2EXRA 4PWBA 2VFVA 3LLBA 1VDVA 3D2JA 1WVFA 3FW7A 2W3RA 4PWCA 3NRZB 3LAEA 1QLUA 1E0YA 4PVHA 3PM9A 2P13A 1DIIA 3S1EA 1VAOA 1DZNA
chains in the Genus database with same CATH topology
5FXEA 3JS8A 4HG0A 1N63C 5HQXA 2R2ZA 2W3SA 4ZOHB 1N62C 2Y08A 1N60C 5K8EA 2Y3SA 1E8HA 2RK5A 3RJ8A 1FO4A 5D79A 1N61C 4BC9A 1ZXIC 2VAOA 2AXRA 4PVKA 1JRPA 2VFUA 1SB3B 1E8GA 1N5XA 3BW7A 4UD8A 1QLTA 1FFUC 3I99A 5HHZA 3FWAA 5L6GA 3C0PA 3VTEA 3S1CA 3D2DA 3AM9A 1DIQA 3PQBA 1MBBA 3D2HA 2E3TA 2O3GA 5I1WA 1W1JA 1FFVC 3W8ZA 3POPA 4ML8A 3GSYA 4BBYA 1W1LA 2MBRA 2QKNA 2Y4GA 4XLOA 2VFRA 1W1KA 2BVFA 4EC3A 1N5WC 5G5GB 1AHZA 1F0XA 1JROA 3FW8A 4PZFA 3NVYB 4OALA 3AN1A 5AE3A 4JB1A 2BVGA 2YVSA 3HSUA 2VFSA 2PLSA 1T3QC 2I0KA 2QPMA 3DQ0A 5AE2A 2WDWA 3HRDC 3KJMA 2UUUA 5I1VA 1I19A 1MBTA 1W1SA 2GQTA 4BC7A 2R8DA 1WYGA 3SR6B 2Q4WA 3NVWB 1W1MA 3DEDA 1E8FA 3TSJA 3RJAA 3NVVB 1UXYA 2W54A 5L6FA 3TSHA 1V97A 1W1QA 5ADZA 1RM6B 1W1RA 3AMZA 5FXFA 2W55A 3S1FA 4MLAA 1AHVA 2NQWA 1HSKA 1FIQB 2BVHA 3TX1A 3ETRB 5HMRA 2PLIA 3EUB3 2P3HA 3NVZB 2IPIA 2UUVA 3W8XA 4DNSA 3B9JB 2Y3RA 5AE1A 4O95A 3S1DA 3FW9A 4PYTA 2P4PA 5FXPA 4PVEA 3NS1B 5AWVA 5G5HB 4BCAA 4PVJA 2Q85A 2OAIA 5FXDA 3W8WA 1WVEA 1AHUA 1W1OA 4JAYA 1ZR6A 2GQUA 2VFTA 2EXRA 4PWBA 2VFVA 3LLBA 1VDVA 3D2JA 1WVFA 3FW7A 2W3RA 4PWCA 3NRZB 3LAEA 1QLUA 1E0YA 4PVHA 3PM9A 2P13A 1DIIA 3S1EA 1VAOA 1DZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FXE A;  3JS8 A;  4HG0 A;  1N63 C;  5HQX A;  2R2Z A;  2W3S A;  4ZOH B;  1N62 C;  1N60 C;  1E8H A;  2RK5 A;  1FO4 A;  5D79 A;  1N61 C;  4BC9 A;  1ZXI C;  2VAO A;  2AXR A;  4PVK A;  1JRP A;  2VFU A;  1SB3 B;  1E8G A;  1N5X A;  3BW7 A;  4UD8 A;  1QLT A;  1FFU C;  3I99 A;  5HHZ A;  3FWA A;  3C0P A;  3VTE A;  3S1C A;  3D2D A;  3AM9 A;  1DIQ A;  1MBB A;  3D2H A;  2E3T A;  2O3G A;  1W1J A;  1FFV C;  3W8Z A;  4ML8 A;  3GSY A;  4BBY A;  1W1L A;  2MBR A;  2QKN A;  4XLO A;  2VFR A;  1W1K A;  2BVF A;  4EC3 A;  1N5W C;  5G5G B;  1AHZ A;  1F0X A;  1JRO A;  3FW8 A;  4PZF A;  3NVY B;  4OAL A;  3AN1 A;  5AE3 A;  4JB1 A;  2BVG A;  2YVS A;  2VFS A;  2PLS A;  1T3Q C;  2I0K A;  2QPM A;  3DQ0 A;  5AE2 A;  3HRD C;  3KJM A;  1I19 A;  1MBT A;  1W1S A;  2GQT A;  4BC7 A;  2R8D A;  1WYG A;  3SR6 B;  2Q4W A;  3NVW B;  1W1M A;  3DED A;  1E8F A;  3TSJ A;  3NVV B;  1UXY A;  2W54 A;  3TSH A;  1V97 A;  1W1Q A;  5ADZ A;  1RM6 B;  1W1R A;  3AMZ A;  5FXF A;  2W55 A;  3S1F A;  4MLA A;  1AHV A;  2NQW A;  1HSK A;  1FIQ B;  2BVH A;  3TX1 A;  3ETR B;  5HMR A;  2PLI A;  3EUB 3;  2P3H A;  3NVZ B;  3W8X A;  4DNS A;  3B9J B;  5AE1 A;  4O95 A;  3S1D A;  3FW9 A;  4PYT A;  2P4P A;  5FXP A;  4PVE A;  3NS1 B;  5G5H B;  4BCA A;  4PVJ A;  2Q85 A;  2OAI A;  5FXD A;  3W8W A;  1WVE A;  1AHU A;  1W1O A;  4JAY A;  1ZR6 A;  2GQU A;  2VFT A;  2EXR A;  4PWB A;  2VFV A;  3LLB A;  1VDV A;  3D2J A;  1WVF A;  3FW7 A;  2W3R A;  4PWC A;  3NRZ B;  3LAE A;  1QLU A;  1E0Y A;  4PVH A;  3PM9 A;  2P13 A;  1DII A;  3S1E A;  1VAO A;  1DZN A; 
#chains in the Genus database with same CATH topology
 5FXE A;  3JS8 A;  4HG0 A;  1N63 C;  5HQX A;  2R2Z A;  2W3S A;  4ZOH B;  1N62 C;  2Y08 A;  1N60 C;  5K8E A;  2Y3S A;  1E8H A;  3EJB B;  2RK5 A;  3RJ8 A;  1FO4 A;  5D79 A;  1N61 C;  4BC9 A;  1ZXI C;  2VAO A;  2AXR A;  4PVK A;  1JRP A;  2VFU A;  1SB3 B;  1E8G A;  1N5X A;  3BW7 A;  4UD8 A;  1QLT A;  1FFU C;  3I99 A;  5HHZ A;  3FWA A;  3EJD B;  5L6G A;  3C0P A;  3VTE A;  3S1C A;  3D2D A;  3AM9 A;  1DIQ A;  3PQB A;  1MBB A;  3D2H A;  2E3T A;  2O3G A;  5I1W A;  1W1J A;  1FFV C;  3W8Z A;  3POP A;  4ML8 A;  3GSY A;  4BBY A;  1W1L A;  2MBR A;  2QKN A;  2Y4G A;  4XLO A;  2VFR A;  1W1K A;  2BVF A;  4EC3 A;  1N5W C;  5G5G B;  1AHZ A;  1F0X A;  1JRO A;  3EJE B;  3FW8 A;  3NVY B;  4PZF A;  4OAL A;  3AN1 A;  5AE3 A;  4JB1 A;  2BVG A;  2YVS A;  3HSU A;  2VFS A;  2PLS A;  1T3Q C;  2I0K A;  2QPM A;  3DQ0 A;  5AE2 A;  2WDW A;  3HRD C;  3KJM A;  2UUU A;  5I1V A;  1I19 A;  1MBT A;  1W1S A;  2GQT A;  4BC7 A;  2R8D A;  1WYG A;  3SR6 B;  2Q4W A;  3NVW B;  1W1M A;  3DED A;  1E8F A;  3TSJ A;  3RJA A;  3NVV B;  1UXY A;  2W54 A;  5L6F A;  3TSH A;  1V97 A;  1W1Q A;  5ADZ A;  1RM6 B;  1W1R A;  3AMZ A;  5FXF A;  2W55 A;  3S1F A;  4MLA A;  1AHV A;  2NQW A;  1HSK A;  1FIQ B;  2BVH A;  3TX1 A;  3ETR B;  5HMR A;  2PLI A;  3EUB 3;  2P3H A;  3NVZ B;  2IPI A;  2UUV A;  3W8X A;  4DNS A;  3B9J B;  2Y3R A;  5AE1 A;  4O95 A;  3S1D A;  3FW9 A;  4PYT A;  2P4P A;  5FXP A;  4PVE A;  3NS1 B;  5AWV A;  5G5H B;  4BCA A;  4PVJ A;  2Q85 A;  2OAI A;  5FXD A;  3W8W A;  1WVE A;  1AHU A;  1W1O A;  4JAY A;  1ZR6 A;  2GQU A;  2VFT A;  2EXR A;  4PWB A;  2VFV A;  3LLB A;  1VDV A;  3D2J A;  1WVF A;  3FW7 A;  2W3R A;  4PWC A;  3NRZ B;  3LAE A;  1QLU A;  1E0Y A;  4PVH A;  3PM9 A;  2P13 A;  1DII A;  3S1E A;  1VAO A;  1DZN A; 
#chains in the Genus database with same CATH homology
 5FXE A;  3JS8 A;  4HG0 A;  1N63 C;  5HQX A;  2R2Z A;  2W3S A;  4ZOH B;  1N62 C;  2Y08 A;  1N60 C;  5K8E A;  2Y3S A;  1E8H A;  2RK5 A;  3RJ8 A;  1FO4 A;  5D79 A;  1N61 C;  4BC9 A;  1ZXI C;  2VAO A;  2AXR A;  4PVK A;  1JRP A;  2VFU A;  1SB3 B;  1E8G A;  1N5X A;  3BW7 A;  4UD8 A;  1QLT A;  1FFU C;  3I99 A;  5HHZ A;  3FWA A;  5L6G A;  3C0P A;  3VTE A;  3S1C A;  3D2D A;  3AM9 A;  1DIQ A;  3PQB A;  1MBB A;  3D2H A;  2E3T A;  2O3G A;  5I1W A;  1W1J A;  1FFV C;  3W8Z A;  3POP A;  4ML8 A;  3GSY A;  4BBY A;  1W1L A;  2MBR A;  2QKN A;  2Y4G A;  4XLO A;  2VFR A;  1W1K A;  2BVF A;  4EC3 A;  1N5W C;  5G5G B;  1AHZ A;  1F0X A;  1JRO A;  3FW8 A;  4PZF A;  3NVY B;  4OAL A;  3AN1 A;  5AE3 A;  4JB1 A;  2BVG A;  2YVS A;  3HSU A;  2VFS A;  2PLS A;  1T3Q C;  2I0K A;  2QPM A;  3DQ0 A;  5AE2 A;  2WDW A;  3HRD C;  3KJM A;  2UUU A;  5I1V A;  1I19 A;  1MBT A;  1W1S A;  2GQT A;  4BC7 A;  2R8D A;  1WYG A;  3SR6 B;  2Q4W A;  3NVW B;  1W1M A;  3DED A;  1E8F A;  3TSJ A;  3RJA A;  3NVV B;  1UXY A;  2W54 A;  5L6F A;  3TSH A;  1V97 A;  1W1Q A;  5ADZ A;  1RM6 B;  1W1R A;  3AMZ A;  5FXF A;  2W55 A;  3S1F A;  4MLA A;  1AHV A;  2NQW A;  1HSK A;  1FIQ B;  2BVH A;  3TX1 A;  3ETR B;  5HMR A;  2PLI A;  3EUB 3;  2P3H A;  3NVZ B;  2IPI A;  2UUV A;  3W8X A;  4DNS A;  3B9J B;  2Y3R A;  5AE1 A;  4O95 A;  3S1D A;  3FW9 A;  4PYT A;  2P4P A;  5FXP A;  4PVE A;  3NS1 B;  5AWV A;  5G5H B;  4BCA A;  4PVJ A;  2Q85 A;  2OAI A;  5FXD A;  3W8W A;  1WVE A;  1AHU A;  1W1O A;  4JAY A;  1ZR6 A;  2GQU A;  2VFT A;  2EXR A;  4PWB A;  2VFV A;  3LLB A;  1VDV A;  3D2J A;  1WVF A;  3FW7 A;  2W3R A;  4PWC A;  3NRZ B;  3LAE A;  1QLU A;  1E0Y A;  4PVH A;  3PM9 A;  2P13 A;  1DII A;  3S1E A;  1VAO A;  1DZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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