5FXFA

Crystal structure of eugenol oxidase in complex with benzoate
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords EUGENOL OXIDASE
publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
total genus 184
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxfA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxfA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxfA03
3FW7A 3ETRB 5HMRA 2VFTA 1UXYA 3AMZA 3NS1B 3TX1A 1RM6B 2Q85A 4BBYA 4PWBA 3S1FA 3TSHA 5AE3A 2AXRA 3B9JB 1N60C 1N5WC 3FW9A 2W55A 2VFVA 3PM9A 1E0YA 2O3GA 1T3QC 4PVEA 4BC7A 3VTEA 4JAYA 2W3RA 2RK5A 1VAOA 3EUB3 1N5XA 1I19A 2BVGA 3DQ0A 4PWCA 5AE2A 4MLAA 2EXRA 1E8GA 1V97A 1QLUA 3JS8A 4PVHA 5HHZA 4DNSA 2PLSA 3C0PA 1DZNA 5G5HB 4BCAA 4ML8A 1JROA 2I0KA 1N63C 2GQUA 1VDVA 1WVFA 2W54A 1WYGA 3NVVB 3S1EA 2PLIA 1DIIA 2MBRA 1HSKA 1ZR6A 1W1QA 3W8ZA 3LLBA 1W1KA 4EC3A 3D2DA 4PVKA 1W1LA 4HG0A 3FW8A 2VAOA 3W8XA 2YVSA 4OALA 2BVFA 4XLOA 2VFUA 3KJMA 2R8DA 3D2HA 1E8FA 1WVEA 2W3SA 4UD8A 4PVJA 1FFVC 3HRDC 5HQXA 5FXDA 4BC9A 2QPMA 1JRPA 2P4PA 1FIQB 1N62C 1DIQA 1W1OA 5FXPA 3FWAA 2GQTA 4ZOHB 2VFSA 3NVZB 1QLTA 2P13A 3AM9A 4JB1A 3TSJA 3S1CA 2BVHA 3SR6B 1AHUA 1MBBA 3AN1A 3S1DA 1AHZA 5FXFA 2E3TA 3D2JA 3NVWB 1FO4A 1SB3B 3I99A 1MBTA 3NRZB 3W8WA 1N61C 1ZXIC 3NVYB 3BW7A 1E8HA 1W1RA 2VFRA 4O95A 5D79A 1W1SA 2R2ZA 2Q4WA 4PZFA 2NQWA 5AE1A 5ADZA 5G5GB 1W1MA 2OAIA 2P3HA 3LAEA 3GSYA 1AHVA 1F0XA 1W1JA 2QKNA 1FFUC 5FXEA 3DEDA 4PYTA
chains in the Genus database with same CATH superfamily
3FW7A 3ETRB 5HMRA 5I1VA 2VFTA 1UXYA 2UUUA 3AMZA 3NS1B 3TX1A 1RM6B 2Q85A 4BBYA 3EJBB 4PWBA 3S1FA 3TSHA 5AE3A 2AXRA 3B9JB 1N60C 1N5WC 3FW9A 2W55A 2VFVA 3PM9A 1E0YA 2O3GA 1T3QC 4PVEA 3RJ8A 4BC7A 3VTEA 4JAYA 2W3RA 2RK5A 1VAOA 3EUB3 1N5XA 1I19A 2BVGA 3DQ0A 4PWCA 5AE2A 4MLAA 2EXRA 1E8GA 1V97A 1QLUA 3JS8A 4PVHA 5HHZA 4DNSA 2PLSA 3C0PA 1DZNA 5G5HB 4BCAA 4ML8A 1JROA 2I0KA 1N63C 2GQUA 1VDVA 1WVFA 2W54A 1WYGA 2WDWA 3NVVB 5L6FA 3S1EA 2PLIA 1DIIA 2MBRA 3EJDB 1HSKA 1ZR6A 3EJEB 1W1QA 3W8ZA 3LLBA 3HSUA 1W1KA 4EC3A 3D2DA 4PVKA 1W1LA 4HG0A 2IPIA 3RJAA 3FW8A 5I1WA 2VAOA 3W8XA 2YVSA 4OALA 2BVFA 4XLOA 2VFUA 3KJMA 2R8DA 3D2HA 1E8FA 1WVEA 2W3SA 4UD8A 4PVJA 1FFVC 3HRDC 5HQXA 5FXDA 4BC9A 2QPMA 1JRPA 2P4PA 1FIQB 1N62C 1DIQA 1W1OA 5FXPA 3FWAA 2GQTA 4ZOHB 2VFSA 3NVZB 1QLTA 2UUVA 2P13A 3AM9A 4JB1A 2Y08A 3TSJA 3S1CA 2Y3SA 2BVHA 3SR6B 1AHUA 1MBBA 3AN1A 2Y3RA 3S1DA 1AHZA 5FXFA 5K8EA 2E3TA 3D2JA 3NVWB 1FO4A 1SB3B 3I99A 1MBTA 3NRZB 3W8WA 1N61C 1ZXIC 3NVYB 3BW7A 1E8HA 1W1RA 2VFRA 4O95A 5D79A 1W1SA 2R2ZA 2Q4WA 4PZFA 2NQWA 5AE1A 5ADZA 5G5GB 1W1MA 2OAIA 2P3HA 3LAEA 3PQBA 3GSYA 5L6GA 1AHVA 1F0XA 1W1JA 2QKNA 1FFUC 5AWVA 5FXEA 3DEDA 3POPA 2Y4GA 4PYTA
chains in the Genus database with same CATH topology
3FW7A 3ETRB 5HMRA 5I1VA 2VFTA 1UXYA 2UUUA 3AMZA 3NS1B 3TX1A 1RM6B 2Q85A 4BBYA 4PWBA 3S1FA 3TSHA 5AE3A 2AXRA 3B9JB 1N60C 1N5WC 3FW9A 2W55A 2VFVA 3PM9A 1E0YA 2O3GA 1T3QC 4PVEA 3RJ8A 4BC7A 3VTEA 4JAYA 2W3RA 2RK5A 1VAOA 3EUB3 1N5XA 1I19A 2BVGA 3DQ0A 4PWCA 5AE2A 4MLAA 2EXRA 1E8GA 1V97A 1QLUA 3JS8A 4PVHA 5HHZA 4DNSA 2PLSA 3C0PA 1DZNA 5G5HB 4BCAA 4ML8A 1JROA 2I0KA 1N63C 2GQUA 1VDVA 1WVFA 2W54A 1WYGA 2WDWA 3NVVB 5L6FA 3S1EA 2PLIA 1DIIA 2MBRA 1HSKA 1ZR6A 1W1QA 3W8ZA 3LLBA 3HSUA 1W1KA 4EC3A 3D2DA 4PVKA 1W1LA 4HG0A 2IPIA 3RJAA 3FW8A 5I1WA 2VAOA 3W8XA 2YVSA 4OALA 2BVFA 4XLOA 2VFUA 3KJMA 2R8DA 3D2HA 1E8FA 1WVEA 2W3SA 4UD8A 4PVJA 1FFVC 3HRDC 5HQXA 5FXDA 4BC9A 2QPMA 1JRPA 2P4PA 1FIQB 1N62C 1DIQA 1W1OA 5FXPA 3FWAA 2GQTA 4ZOHB 2VFSA 3NVZB 1QLTA 2UUVA 2P13A 3AM9A 4JB1A 2Y08A 3TSJA 3S1CA 2Y3SA 2BVHA 3SR6B 1AHUA 1MBBA 3AN1A 2Y3RA 3S1DA 1AHZA 5FXFA 5K8EA 2E3TA 3D2JA 3NVWB 1FO4A 1SB3B 3I99A 1MBTA 3NRZB 3W8WA 1N61C 1ZXIC 3NVYB 3BW7A 1E8HA 1W1RA 2VFRA 4O95A 5D79A 1W1SA 2R2ZA 2Q4WA 4PZFA 2NQWA 5AE1A 5ADZA 5G5GB 1W1MA 2OAIA 2P3HA 3LAEA 3PQBA 3GSYA 5L6GA 1AHVA 1F0XA 1W1JA 2QKNA 1FFUC 5AWVA 5FXEA 3DEDA 3POPA 2Y4GA 4PYTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FW7 A;  3ETR B;  5HMR A;  2VFT A;  1UXY A;  3AMZ A;  3NS1 B;  3TX1 A;  1RM6 B;  2Q85 A;  4BBY A;  4PWB A;  3S1F A;  3TSH A;  5AE3 A;  2AXR A;  3B9J B;  1N60 C;  1N5W C;  3FW9 A;  2W55 A;  2VFV A;  3PM9 A;  1E0Y A;  2O3G A;  1T3Q C;  4PVE A;  4BC7 A;  3VTE A;  4JAY A;  2W3R A;  2RK5 A;  1VAO A;  3EUB 3;  1N5X A;  1I19 A;  2BVG A;  3DQ0 A;  4PWC A;  5AE2 A;  4MLA A;  2EXR A;  1E8G A;  1V97 A;  1QLU A;  3JS8 A;  4PVH A;  5HHZ A;  4DNS A;  2PLS A;  3C0P A;  1DZN A;  5G5H B;  4BCA A;  4ML8 A;  1JRO A;  2I0K A;  1N63 C;  2GQU A;  1VDV A;  1WVF A;  2W54 A;  1WYG A;  3NVV B;  3S1E A;  2PLI A;  1DII A;  2MBR A;  1HSK A;  1ZR6 A;  1W1Q A;  3W8Z A;  3LLB A;  1W1K A;  4EC3 A;  3D2D A;  4PVK A;  1W1L A;  4HG0 A;  3FW8 A;  2VAO A;  3W8X A;  2YVS A;  4OAL A;  2BVF A;  4XLO A;  2VFU A;  3KJM A;  2R8D A;  3D2H A;  1E8F A;  1WVE A;  2W3S A;  4UD8 A;  4PVJ A;  1FFV C;  3HRD C;  5HQX A;  5FXD A;  4BC9 A;  2QPM A;  1JRP A;  2P4P A;  1FIQ B;  1N62 C;  1DIQ A;  1W1O A;  5FXP A;  3FWA A;  2GQT A;  4ZOH B;  2VFS A;  3NVZ B;  1QLT A;  2P13 A;  3AM9 A;  4JB1 A;  3TSJ A;  3S1C A;  2BVH A;  3SR6 B;  1AHU A;  1MBB A;  3AN1 A;  3S1D A;  1AHZ A;  5FXF A;  2E3T A;  3D2J A;  3NVW B;  1FO4 A;  1SB3 B;  3I99 A;  1MBT A;  3NRZ B;  3W8W A;  1N61 C;  1ZXI C;  3NVY B;  3BW7 A;  1E8H A;  1W1R A;  2VFR A;  4O95 A;  5D79 A;  1W1S A;  2R2Z A;  2Q4W A;  4PZF A;  2NQW A;  5AE1 A;  5ADZ A;  5G5G B;  1W1M A;  2OAI A;  2P3H A;  3LAE A;  3GSY A;  1AHV A;  1F0X A;  1W1J A;  2QKN A;  1FFU C;  5FXE A;  3DED A;  4PYT A; 
#chains in the Genus database with same CATH topology
 3FW7 A;  3ETR B;  5HMR A;  5I1V A;  2VFT A;  1UXY A;  2UUU A;  3AMZ A;  3NS1 B;  3TX1 A;  1RM6 B;  2Q85 A;  4BBY A;  3EJB B;  4PWB A;  3S1F A;  3TSH A;  5AE3 A;  2AXR A;  3B9J B;  1N60 C;  1N5W C;  3FW9 A;  2W55 A;  2VFV A;  3PM9 A;  1E0Y A;  2O3G A;  1T3Q C;  4PVE A;  3RJ8 A;  4BC7 A;  3VTE A;  4JAY A;  2W3R A;  2RK5 A;  1VAO A;  3EUB 3;  1N5X A;  1I19 A;  2BVG A;  3DQ0 A;  4PWC A;  5AE2 A;  4MLA A;  2EXR A;  1E8G A;  1V97 A;  1QLU A;  3JS8 A;  4PVH A;  5HHZ A;  4DNS A;  2PLS A;  3C0P A;  1DZN A;  5G5H B;  4BCA A;  4ML8 A;  1JRO A;  2I0K A;  1N63 C;  2GQU A;  1VDV A;  1WVF A;  2W54 A;  1WYG A;  2WDW A;  3NVV B;  5L6F A;  3S1E A;  2PLI A;  1DII A;  2MBR A;  3EJD B;  1HSK A;  1ZR6 A;  3EJE B;  1W1Q A;  3W8Z A;  3LLB A;  3HSU A;  1W1K A;  4EC3 A;  3D2D A;  4PVK A;  1W1L A;  4HG0 A;  2IPI A;  3RJA A;  3FW8 A;  5I1W A;  2VAO A;  3W8X A;  2YVS A;  4OAL A;  2BVF A;  4XLO A;  2VFU A;  3KJM A;  2R8D A;  3D2H A;  1E8F A;  1WVE A;  2W3S A;  4UD8 A;  4PVJ A;  1FFV C;  3HRD C;  5HQX A;  5FXD A;  4BC9 A;  2QPM A;  1JRP A;  2P4P A;  1FIQ B;  1N62 C;  1DIQ A;  1W1O A;  5FXP A;  3FWA A;  2GQT A;  4ZOH B;  2VFS A;  3NVZ B;  1QLT A;  2UUV A;  2P13 A;  3AM9 A;  4JB1 A;  2Y08 A;  3TSJ A;  3S1C A;  2Y3S A;  2BVH A;  3SR6 B;  1AHU A;  1MBB A;  3AN1 A;  2Y3R A;  3S1D A;  1AHZ A;  5FXF A;  5K8E A;  2E3T A;  3D2J A;  3NVW B;  1FO4 A;  1SB3 B;  3I99 A;  1MBT A;  3NRZ B;  3W8W A;  1N61 C;  1ZXI C;  3NVY B;  3BW7 A;  1E8H A;  1W1R A;  2VFR A;  4O95 A;  5D79 A;  1W1S A;  2R2Z A;  2Q4W A;  4PZF A;  2NQW A;  5AE1 A;  5ADZ A;  5G5G B;  1W1M A;  2OAI A;  2P3H A;  3LAE A;  3PQB A;  3GSY A;  5L6G A;  1AHV A;  1F0X A;  1W1J A;  2QKN A;  1FFU C;  5AWV A;  5FXE A;  3DED A;  3POP A;  2Y4G A;  4PYT A; 
#chains in the Genus database with same CATH homology
 3FW7 A;  3ETR B;  5HMR A;  5I1V A;  2VFT A;  1UXY A;  2UUU A;  3AMZ A;  3NS1 B;  3TX1 A;  1RM6 B;  2Q85 A;  4BBY A;  4PWB A;  3S1F A;  3TSH A;  5AE3 A;  2AXR A;  3B9J B;  1N60 C;  1N5W C;  3FW9 A;  2W55 A;  2VFV A;  3PM9 A;  1E0Y A;  2O3G A;  1T3Q C;  4PVE A;  3RJ8 A;  4BC7 A;  3VTE A;  4JAY A;  2W3R A;  2RK5 A;  1VAO A;  3EUB 3;  1N5X A;  1I19 A;  2BVG A;  3DQ0 A;  4PWC A;  5AE2 A;  4MLA A;  2EXR A;  1E8G A;  1V97 A;  1QLU A;  3JS8 A;  4PVH A;  5HHZ A;  4DNS A;  2PLS A;  3C0P A;  1DZN A;  5G5H B;  4BCA A;  4ML8 A;  1JRO A;  2I0K A;  1N63 C;  2GQU A;  1VDV A;  1WVF A;  2W54 A;  1WYG A;  2WDW A;  3NVV B;  5L6F A;  3S1E A;  2PLI A;  1DII A;  2MBR A;  1HSK A;  1ZR6 A;  1W1Q A;  3W8Z A;  3LLB A;  3HSU A;  1W1K A;  4EC3 A;  3D2D A;  4PVK A;  1W1L A;  4HG0 A;  2IPI A;  3RJA A;  3FW8 A;  5I1W A;  2VAO A;  3W8X A;  2YVS A;  4OAL A;  2BVF A;  4XLO A;  2VFU A;  3KJM A;  2R8D A;  3D2H A;  1E8F A;  1WVE A;  2W3S A;  4UD8 A;  4PVJ A;  1FFV C;  3HRD C;  5HQX A;  5FXD A;  4BC9 A;  2QPM A;  1JRP A;  2P4P A;  1FIQ B;  1N62 C;  1DIQ A;  1W1O A;  5FXP A;  3FWA A;  2GQT A;  4ZOH B;  2VFS A;  3NVZ B;  1QLT A;  2UUV A;  2P13 A;  3AM9 A;  4JB1 A;  2Y08 A;  3TSJ A;  3S1C A;  2Y3S A;  2BVH A;  3SR6 B;  1AHU A;  1MBB A;  3AN1 A;  2Y3R A;  3S1D A;  1AHZ A;  5FXF A;  5K8E A;  2E3T A;  3D2J A;  3NVW B;  1FO4 A;  1SB3 B;  3I99 A;  1MBT A;  3NRZ B;  3W8W A;  1N61 C;  1ZXI C;  3NVY B;  3BW7 A;  1E8H A;  1W1R A;  2VFR A;  4O95 A;  5D79 A;  1W1S A;  2R2Z A;  2Q4W A;  4PZF A;  2NQW A;  5AE1 A;  5ADZ A;  5G5G B;  1W1M A;  2OAI A;  2P3H A;  3LAE A;  3PQB A;  3GSY A;  5L6G A;  1AHV A;  1F0X A;  1W1J A;  2QKN A;  1FFU C;  5AWV A;  5FXE A;  3DED A;  3POP A;  2Y4G A;  4PYT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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