5FXFA

Crystal structure of eugenol oxidase in complex with benzoate
Total Genus 184
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
525
structure length
525
Chain Sequence
b'TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords EUGENOL OXIDASE
publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
total genus 184
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxfA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxfA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxfA03
1N5WC 1E8HA 2GQTA 2E3TA 4BCAA 1N60C 2Q85A 3HRDC 5ADZA 1I19A 4PZFA 1T3QC 4PWCA 1FO4A 1W1RA 4EC3A 3W8WA 4BC9A 3W8XA 3W8ZA 1JRPA 3FW8A 2W3SA 1QLUA 1FIQB 5AE3A 4DNSA 5HQXA 3NVYB 5FXDA 3I99A 1SB3B 3LAEA 4XLOA 1WVFA 1W1OA 3D2HA 4PVKA 1N62C 1W1MA 3KJMA 2RK5A 3S1EA 3NRZB 2AXRA 2BVFA 1ZR6A 3FWAA 2QPMA 3VTEA 1MBBA 1VAOA 2BVGA 4UD8A 5D79A 1DIQA 3S1DA 1W1JA 2MBRA 1W1KA 1AHZA 1WYGA 3EUB3 4BBYA 2W3RA 3ETRB 3DEDA 2VFUA 3TSJA 1AHVA 3NS1B 4PYTA 2GQUA 4JB1A 2EXRA 5AE2A 1E0YA 3JS8A 3GSYA 4ML8A 5AE1A 2VFSA 1W1LA 1RM6B 2VFVA 1E8FA 1MBTA 2P3HA 1JROA 3DQ0A 4PWBA 2BVHA 1VDVA 4HG0A 4PVJA 1N5XA 3C0PA 1WVEA 1W1SA 3LLBA 1N63C 1W1QA 5G5HB 3FW9A 2YVSA 3AMZA 2VFTA 2QKNA 3AM9A 3AN1A 2NQWA 2O3GA 2R2ZA 4PVHA 5FXEA 4OALA 1N61C 2Q4WA 4PVEA 3SR6B 5HMRA 4BC7A 3TSHA 3NVVB 4ZOHB 5HHZA 3D2JA 1DIIA 2VFRA 1FFUC 3TX1A 2PLSA 2PLIA 3NVZB 2W55A 3S1CA 2R8DA 1HSKA 1UXYA 1V97A 2W54A 2P4PA 2P13A 5FXPA 4O95A 2I0KA 2VAOA 1QLTA 1E8GA 2OAIA 3B9JB 1DZNA 5FXFA 5G5GB 4MLAA 3NVWB 1FFVC 3FW7A 4JAYA 1F0XA 1ZXIC 3PM9A 3D2DA 3S1FA 3BW7A 1AHUA
chains in the Genus database with same CATH superfamily
1N5WC 2WDWA 1E8HA 2GQTA 5AWVA 2E3TA 4BCAA 1N60C 3HSUA 2IPIA 2Q85A 3HRDC 5ADZA 1I19A 4PZFA 1T3QC 4PWCA 1FO4A 1W1RA 4EC3A 3W8WA 4BC9A 3W8XA 3W8ZA 1JRPA 3FW8A 2Y3RA 2W3SA 1QLUA 1FIQB 5K8EA 5AE3A 4DNSA 5HQXA 3NVYB 5FXDA 3I99A 1SB3B 3EJBB 3LAEA 4XLOA 1WVFA 1W1OA 3D2HA 4PVKA 1N62C 1W1MA 3KJMA 2RK5A 3S1EA 3NRZB 2AXRA 2BVFA 1ZR6A 3FWAA 3RJAA 2QPMA 3VTEA 1MBBA 1VAOA 2BVGA 4UD8A 5D79A 5L6FA 1DIQA 5I1VA 3S1DA 1W1JA 2MBRA 1W1KA 1AHZA 1WYGA 2UUVA 2UUUA 3EUB3 4BBYA 2Y08A 2W3RA 3ETRB 3DEDA 2VFUA 3EJDB 3TSJA 1AHVA 3NS1B 4PYTA 2GQUA 3POPA 4JB1A 2EXRA 5AE2A 1E0YA 3JS8A 3GSYA 4ML8A 5AE1A 2VFSA 1W1LA 1RM6B 2VFVA 1E8FA 1MBTA 3EJEB 2P3HA 1JROA 3DQ0A 4PWBA 2BVHA 1VDVA 4HG0A 4PVJA 5I1WA 1N5XA 3C0PA 1WVEA 1W1SA 3LLBA 1N63C 1W1QA 5G5HB 3FW9A 2YVSA 3AMZA 2VFTA 2Y3SA 2QKNA 3AM9A 3AN1A 2NQWA 2O3GA 2R2ZA 2Y4GA 4PVHA 5FXEA 4OALA 1N61C 2Q4WA 4PVEA 3SR6B 5HMRA 4BC7A 3TSHA 3NVVB 4ZOHB 5HHZA 3D2JA 1DIIA 2VFRA 1FFUC 3TX1A 2PLSA 2PLIA 3NVZB 2W55A 3S1CA 5L6GA 2R8DA 1HSKA 1UXYA 1V97A 2W54A 2P4PA 2P13A 5FXPA 4O95A 2I0KA 2VAOA 1QLTA 1E8GA 2OAIA 3B9JB 1DZNA 5FXFA 5G5GB 4MLAA 3NVWB 1FFVC 3RJ8A 3FW7A 4JAYA 3PQBA 1F0XA 1ZXIC 3PM9A 3D2DA 3S1FA 3BW7A 1AHUA
chains in the Genus database with same CATH topology
1N5WC 2WDWA 1E8HA 2GQTA 5AWVA 2E3TA 4BCAA 1N60C 3HSUA 2IPIA 2Q85A 3HRDC 5ADZA 1I19A 4PZFA 1T3QC 4PWCA 1FO4A 1W1RA 4EC3A 3W8WA 4BC9A 3W8XA 3W8ZA 1JRPA 3FW8A 2Y3RA 2W3SA 1QLUA 1FIQB 5K8EA 5AE3A 4DNSA 5HQXA 3NVYB 5FXDA 3I99A 1SB3B 3LAEA 4XLOA 1WVFA 1W1OA 3D2HA 4PVKA 1N62C 1W1MA 3KJMA 2RK5A 3S1EA 3NRZB 2AXRA 2BVFA 1ZR6A 3FWAA 3RJAA 2QPMA 3VTEA 1MBBA 1VAOA 2BVGA 4UD8A 5D79A 5L6FA 1DIQA 5I1VA 3S1DA 1W1JA 2MBRA 1W1KA 1AHZA 1WYGA 2UUVA 2UUUA 3EUB3 4BBYA 2Y08A 2W3RA 3ETRB 3DEDA 2VFUA 3TSJA 1AHVA 3NS1B 4PYTA 2GQUA 3POPA 4JB1A 2EXRA 5AE2A 1E0YA 3JS8A 3GSYA 4ML8A 5AE1A 2VFSA 1W1LA 1RM6B 2VFVA 1E8FA 1MBTA 2P3HA 1JROA 3DQ0A 4PWBA 2BVHA 1VDVA 4HG0A 4PVJA 5I1WA 1N5XA 3C0PA 1WVEA 1W1SA 3LLBA 1N63C 1W1QA 5G5HB 3FW9A 2YVSA 3AMZA 2VFTA 2Y3SA 2QKNA 3AM9A 3AN1A 2NQWA 2O3GA 2R2ZA 2Y4GA 4PVHA 5FXEA 4OALA 1N61C 2Q4WA 4PVEA 3SR6B 5HMRA 4BC7A 3TSHA 3NVVB 4ZOHB 5HHZA 3D2JA 1DIIA 2VFRA 1FFUC 3TX1A 2PLSA 2PLIA 3NVZB 2W55A 3S1CA 5L6GA 2R8DA 1HSKA 1UXYA 1V97A 2W54A 2P4PA 2P13A 5FXPA 4O95A 2I0KA 2VAOA 1QLTA 1E8GA 2OAIA 3B9JB 1DZNA 5FXFA 5G5GB 4MLAA 3NVWB 1FFVC 3RJ8A 3FW7A 4JAYA 3PQBA 1F0XA 1ZXIC 3PM9A 3D2DA 3S1FA 3BW7A 1AHUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N5W C;  1E8H A;  2GQT A;  2E3T A;  4BCA A;  1N60 C;  2Q85 A;  3HRD C;  5ADZ A;  1I19 A;  4PZF A;  1T3Q C;  4PWC A;  1FO4 A;  1W1R A;  4EC3 A;  3W8W A;  4BC9 A;  3W8X A;  3W8Z A;  1JRP A;  3FW8 A;  2W3S A;  1QLU A;  1FIQ B;  5AE3 A;  4DNS A;  5HQX A;  3NVY B;  5FXD A;  3I99 A;  1SB3 B;  3LAE A;  4XLO A;  1WVF A;  1W1O A;  3D2H A;  4PVK A;  1N62 C;  1W1M A;  3KJM A;  2RK5 A;  3S1E A;  3NRZ B;  2AXR A;  2BVF A;  1ZR6 A;  3FWA A;  2QPM A;  3VTE A;  1MBB A;  1VAO A;  2BVG A;  4UD8 A;  5D79 A;  1DIQ A;  3S1D A;  1W1J A;  2MBR A;  1W1K A;  1AHZ A;  1WYG A;  3EUB 3;  4BBY A;  2W3R A;  3ETR B;  3DED A;  2VFU A;  3TSJ A;  1AHV A;  3NS1 B;  4PYT A;  2GQU A;  4JB1 A;  2EXR A;  5AE2 A;  1E0Y A;  3JS8 A;  3GSY A;  4ML8 A;  5AE1 A;  2VFS A;  1W1L A;  1RM6 B;  2VFV A;  1E8F A;  1MBT A;  2P3H A;  1JRO A;  3DQ0 A;  4PWB A;  2BVH A;  1VDV A;  4HG0 A;  4PVJ A;  1N5X A;  3C0P A;  1WVE A;  1W1S A;  3LLB A;  1N63 C;  1W1Q A;  5G5H B;  3FW9 A;  2YVS A;  3AMZ A;  2VFT A;  2QKN A;  3AM9 A;  3AN1 A;  2NQW A;  2O3G A;  2R2Z A;  4PVH A;  5FXE A;  4OAL A;  1N61 C;  2Q4W A;  4PVE A;  3SR6 B;  5HMR A;  4BC7 A;  3TSH A;  3NVV B;  4ZOH B;  5HHZ A;  3D2J A;  1DII A;  2VFR A;  1FFU C;  3TX1 A;  2PLS A;  2PLI A;  3NVZ B;  2W55 A;  3S1C A;  2R8D A;  1HSK A;  1UXY A;  1V97 A;  2W54 A;  2P4P A;  2P13 A;  5FXP A;  4O95 A;  2I0K A;  2VAO A;  1QLT A;  1E8G A;  2OAI A;  3B9J B;  1DZN A;  5FXF A;  5G5G B;  4MLA A;  3NVW B;  1FFV C;  3FW7 A;  4JAY A;  1F0X A;  1ZXI C;  3PM9 A;  3D2D A;  3S1F A;  3BW7 A;  1AHU A; 
#chains in the Genus database with same CATH topology
 1N5W C;  2WDW A;  1E8H A;  2GQT A;  5AWV A;  2E3T A;  4BCA A;  1N60 C;  3HSU A;  2IPI A;  2Q85 A;  3HRD C;  5ADZ A;  1I19 A;  4PZF A;  1T3Q C;  4PWC A;  1FO4 A;  1W1R A;  4EC3 A;  3W8W A;  4BC9 A;  3W8X A;  3W8Z A;  1JRP A;  3FW8 A;  2Y3R A;  2W3S A;  1QLU A;  1FIQ B;  5K8E A;  5AE3 A;  4DNS A;  5HQX A;  3NVY B;  5FXD A;  3I99 A;  1SB3 B;  3EJB B;  3LAE A;  4XLO A;  1WVF A;  1W1O A;  3D2H A;  4PVK A;  1N62 C;  1W1M A;  3KJM A;  2RK5 A;  3S1E A;  3NRZ B;  2AXR A;  2BVF A;  1ZR6 A;  3FWA A;  3RJA A;  2QPM A;  3VTE A;  1MBB A;  1VAO A;  2BVG A;  4UD8 A;  5D79 A;  5L6F A;  1DIQ A;  5I1V A;  3S1D A;  1W1J A;  2MBR A;  1W1K A;  1AHZ A;  1WYG A;  2UUV A;  2UUU A;  3EUB 3;  4BBY A;  2Y08 A;  2W3R A;  3ETR B;  3DED A;  2VFU A;  3EJD B;  3TSJ A;  1AHV A;  3NS1 B;  4PYT A;  2GQU A;  3POP A;  4JB1 A;  2EXR A;  5AE2 A;  1E0Y A;  3JS8 A;  3GSY A;  4ML8 A;  5AE1 A;  2VFS A;  1W1L A;  1RM6 B;  2VFV A;  1E8F A;  1MBT A;  3EJE B;  2P3H A;  1JRO A;  3DQ0 A;  4PWB A;  2BVH A;  1VDV A;  4HG0 A;  4PVJ A;  5I1W A;  1N5X A;  3C0P A;  1WVE A;  1W1S A;  3LLB A;  1N63 C;  1W1Q A;  5G5H B;  3FW9 A;  2YVS A;  3AMZ A;  2VFT A;  2Y3S A;  2QKN A;  3AM9 A;  3AN1 A;  2NQW A;  2O3G A;  2R2Z A;  2Y4G A;  4PVH A;  5FXE A;  4OAL A;  1N61 C;  2Q4W A;  4PVE A;  3SR6 B;  5HMR A;  4BC7 A;  3TSH A;  3NVV B;  4ZOH B;  5HHZ A;  3D2J A;  1DII A;  2VFR A;  1FFU C;  3TX1 A;  2PLS A;  2PLI A;  3NVZ B;  2W55 A;  3S1C A;  5L6G A;  2R8D A;  1HSK A;  1UXY A;  1V97 A;  2W54 A;  2P4P A;  2P13 A;  5FXP A;  4O95 A;  2I0K A;  2VAO A;  1QLT A;  1E8G A;  2OAI A;  3B9J B;  1DZN A;  5FXF A;  5G5G B;  4MLA A;  3NVW B;  1FFV C;  3RJ8 A;  3FW7 A;  4JAY A;  3PQB A;  1F0X A;  1ZXI C;  3PM9 A;  3D2D A;  3S1F A;  3BW7 A;  1AHU A; 
#chains in the Genus database with same CATH homology
 1N5W C;  2WDW A;  1E8H A;  2GQT A;  5AWV A;  2E3T A;  4BCA A;  1N60 C;  3HSU A;  2IPI A;  2Q85 A;  3HRD C;  5ADZ A;  1I19 A;  4PZF A;  1T3Q C;  4PWC A;  1FO4 A;  1W1R A;  4EC3 A;  3W8W A;  4BC9 A;  3W8X A;  3W8Z A;  1JRP A;  3FW8 A;  2Y3R A;  2W3S A;  1QLU A;  1FIQ B;  5K8E A;  5AE3 A;  4DNS A;  5HQX A;  3NVY B;  5FXD A;  3I99 A;  1SB3 B;  3LAE A;  4XLO A;  1WVF A;  1W1O A;  3D2H A;  4PVK A;  1N62 C;  1W1M A;  3KJM A;  2RK5 A;  3S1E A;  3NRZ B;  2AXR A;  2BVF A;  1ZR6 A;  3FWA A;  3RJA A;  2QPM A;  3VTE A;  1MBB A;  1VAO A;  2BVG A;  4UD8 A;  5D79 A;  5L6F A;  1DIQ A;  5I1V A;  3S1D A;  1W1J A;  2MBR A;  1W1K A;  1AHZ A;  1WYG A;  2UUV A;  2UUU A;  3EUB 3;  4BBY A;  2Y08 A;  2W3R A;  3ETR B;  3DED A;  2VFU A;  3TSJ A;  1AHV A;  3NS1 B;  4PYT A;  2GQU A;  3POP A;  4JB1 A;  2EXR A;  5AE2 A;  1E0Y A;  3JS8 A;  3GSY A;  4ML8 A;  5AE1 A;  2VFS A;  1W1L A;  1RM6 B;  2VFV A;  1E8F A;  1MBT A;  2P3H A;  1JRO A;  3DQ0 A;  4PWB A;  2BVH A;  1VDV A;  4HG0 A;  4PVJ A;  5I1W A;  1N5X A;  3C0P A;  1WVE A;  1W1S A;  3LLB A;  1N63 C;  1W1Q A;  5G5H B;  3FW9 A;  2YVS A;  3AMZ A;  2VFT A;  2Y3S A;  2QKN A;  3AM9 A;  3AN1 A;  2NQW A;  2O3G A;  2R2Z A;  2Y4G A;  4PVH A;  5FXE A;  4OAL A;  1N61 C;  2Q4W A;  4PVE A;  3SR6 B;  5HMR A;  4BC7 A;  3TSH A;  3NVV B;  4ZOH B;  5HHZ A;  3D2J A;  1DII A;  2VFR A;  1FFU C;  3TX1 A;  2PLS A;  2PLI A;  3NVZ B;  2W55 A;  3S1C A;  5L6G A;  2R8D A;  1HSK A;  1UXY A;  1V97 A;  2W54 A;  2P4P A;  2P13 A;  5FXP A;  4O95 A;  2I0K A;  2VAO A;  1QLT A;  1E8G A;  2OAI A;  3B9J B;  1DZN A;  5FXF A;  5G5G B;  4MLA A;  3NVW B;  1FFV C;  3RJ8 A;  3FW7 A;  4JAY A;  3PQB A;  1F0X A;  1ZXI C;  3PM9 A;  3D2D A;  3S1F A;  3BW7 A;  1AHU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...