5FXPA

Crystal structure of eugenol oxidase in complex with vanillin
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords EUGENOL OXIDASE
publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
total genus 174
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxpA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxpA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxpA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxpA03
1W1OA 2PLSA 2R2ZA 3NVWB 3AN1A 3W8XA 1N5XA 1F0XA 4BC7A 2YVSA 1DZNA 1DIQA 1N61C 2GQTA 1E8GA 1MBBA 1W1RA 3GSYA 3NVYB 1FO4A 2EXRA 1N60C 5G5HB 3NVVB 1WVFA 3DQ0A 1HSKA 3W8ZA 2BVHA 2OAIA 1E8FA 3VTEA 2P13A 1FIQB 3FW7A 3FW9A 1W1KA 5FXPA 3I99A 4EC3A 4OALA 5G5GB 2VAOA 1AHUA 1FFUC 4JAYA 2VFSA 4BC9A 3LLBA 3C0PA 2QPMA 1AHZA 2VFRA 1QLTA 4BBYA 2Q85A 1VAOA 1VDVA 1ZXIC 3BW7A 2E3TA 2PLIA 2W3SA 4PVJA 5FXDA 1JROA 1ZR6A 1WVEA 4PVEA 1N62C 3LAEA 1WYGA 5ADZA 1QLUA 3FW8A 3S1DA 5HHZA 4PVHA 4XLOA 2QKNA 3SR6B 1E8HA 3AMZA 3NVZB 2AXRA 1DIIA 1E0YA 3B9JB 2W3RA 3TX1A 5FXEA 2P4PA 2R8DA 5AE2A 3PM9A 3S1FA 4PWBA 2P3HA 1SB3B 2Q4WA 4PZFA 2NQWA 4ML8A 5FXFA 4PYTA 3S1CA 3JS8A 4JB1A 1N63C 3AM9A 4ZOHB 2VFUA 2MBRA 4MLAA 4PVKA 3D2JA 3EUB3 4BCAA 3TSJA 2BVFA 4HG0A 3NRZB 5HMRA 3D2DA 3W8WA 4PWCA 5AE1A 1T3QC 1W1LA 3ETRB 1W1QA 1UXYA 2RK5A 2O3GA 2VFVA 1W1JA 1N5WC 4O95A 1RM6B 3HRDC 2GQUA 2VFTA 3D2HA 1I19A 3KJMA 1MBTA 2W55A 1AHVA 1W1MA 3FWAA 5D79A 3DEDA 1JRPA 4UD8A 3TSHA 5AE3A 2W54A 1V97A 4DNSA 5HQXA 3NS1B 2BVGA 1FFVC 3S1EA 1W1SA 2I0KA
chains in the Genus database with same CATH superfamily
1W1OA 2PLSA 2R2ZA 3NVWB 3AN1A 3W8XA 1N5XA 1F0XA 4BC7A 2YVSA 1DZNA 3HSUA 1DIQA 1N61C 2GQTA 1E8GA 1MBBA 1W1RA 3GSYA 2IPIA 3NVYB 1FO4A 2EXRA 1N60C 5G5HB 3NVVB 2Y3RA 1WVFA 3DQ0A 1HSKA 3W8ZA 2BVHA 2OAIA 1E8FA 3VTEA 3RJ8A 2P13A 1FIQB 3FW7A 3FW9A 1W1KA 5FXPA 3I99A 4EC3A 4OALA 5G5GB 2VAOA 1AHUA 1FFUC 4JAYA 2VFSA 4BC9A 3LLBA 3C0PA 2QPMA 5K8EA 1AHZA 2VFRA 1QLTA 4BBYA 2Q85A 1VAOA 1VDVA 5L6FA 1ZXIC 3BW7A 2E3TA 2PLIA 2W3SA 4PVJA 5FXDA 3EJDB 1JROA 1ZR6A 3PQBA 1WVEA 4PVEA 1N62C 3LAEA 1WYGA 5ADZA 5I1WA 1QLUA 3FW8A 3S1DA 3RJAA 5HHZA 5I1VA 4PVHA 4XLOA 2QKNA 3SR6B 1E8HA 3AMZA 3NVZB 2AXRA 1DIIA 1E0YA 2WDWA 3B9JB 2W3RA 2Y3SA 3TX1A 5FXEA 2P4PA 2R8DA 5AE2A 3PM9A 3S1FA 4PWBA 2P3HA 1SB3B 2Q4WA 4PZFA 2NQWA 4ML8A 5FXFA 4PYTA 3S1CA 3JS8A 4JB1A 1N63C 3AM9A 4ZOHB 2VFUA 2MBRA 3EJEB 4MLAA 3D2JA 4PVKA 3EUB3 2Y4GA 4BCAA 3TSJA 2BVFA 4HG0A 3NRZB 5HMRA 2UUUA 3D2DA 3W8WA 4PWCA 5AE1A 1T3QC 1W1LA 3EJBB 3ETRB 2UUVA 1W1QA 1UXYA 2RK5A 5AWVA 2O3GA 2VFVA 1W1JA 1N5WC 4O95A 1RM6B 3HRDC 3POPA 2GQUA 2VFTA 3D2HA 1I19A 3KJMA 1MBTA 2W55A 2Y08A 1AHVA 1W1MA 3FWAA 5L6GA 5D79A 3DEDA 1JRPA 4UD8A 3TSHA 5AE3A 2W54A 1V97A 4DNSA 5HQXA 3NS1B 2BVGA 1FFVC 3S1EA 1W1SA 2I0KA
chains in the Genus database with same CATH topology
1W1OA 2PLSA 2R2ZA 3NVWB 3AN1A 3W8XA 1N5XA 1F0XA 4BC7A 2YVSA 1DZNA 3HSUA 1DIQA 1N61C 2GQTA 1E8GA 1MBBA 1W1RA 3GSYA 2IPIA 3NVYB 1FO4A 2EXRA 1N60C 5G5HB 2Y3RA 3NVVB 1WVFA 3DQ0A 1HSKA 3W8ZA 2BVHA 2OAIA 1E8FA 3VTEA 3RJ8A 2P13A 1FIQB 3FW7A 3FW9A 1W1KA 5FXPA 3I99A 4EC3A 4OALA 5G5GB 2VAOA 1AHUA 1FFUC 4JAYA 2VFSA 4BC9A 3LLBA 3C0PA 2QPMA 5K8EA 1AHZA 2VFRA 1QLTA 4BBYA 2Q85A 1VAOA 1VDVA 5L6FA 1ZXIC 3BW7A 2E3TA 2PLIA 2W3SA 4PVJA 5FXDA 1JROA 1ZR6A 3PQBA 1WVEA 4PVEA 1N62C 3LAEA 1WYGA 5ADZA 5I1WA 1QLUA 3FW8A 3S1DA 3RJAA 5HHZA 5I1VA 4PVHA 4XLOA 2QKNA 3SR6B 1E8HA 3AMZA 3NVZB 2AXRA 1DIIA 1E0YA 2WDWA 3B9JB 2W3RA 2Y3SA 3TX1A 5FXEA 2P4PA 2R8DA 5AE2A 3PM9A 3S1FA 4PWBA 2P3HA 1SB3B 2Q4WA 4PZFA 2NQWA 4ML8A 5FXFA 4PYTA 3S1CA 3JS8A 4JB1A 1N63C 3AM9A 4ZOHB 2VFUA 2MBRA 4MLAA 4PVKA 3D2JA 3EUB3 2Y4GA 4BCAA 3TSJA 2BVFA 4HG0A 3NRZB 5HMRA 2UUUA 3D2DA 3W8WA 4PWCA 5AE1A 1T3QC 1W1LA 3ETRB 2UUVA 1W1QA 1UXYA 2RK5A 5AWVA 2O3GA 2VFVA 1W1JA 1N5WC 4O95A 1RM6B 3HRDC 3POPA 2GQUA 2VFTA 3D2HA 1I19A 3KJMA 1MBTA 2W55A 2Y08A 1AHVA 1W1MA 3FWAA 5L6GA 5D79A 3DEDA 1JRPA 4UD8A 3TSHA 5AE3A 2W54A 1V97A 4DNSA 5HQXA 3NS1B 2BVGA 1FFVC 3S1EA 1W1SA 2I0KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W1O A;  2PLS A;  2R2Z A;  3NVW B;  3AN1 A;  3W8X A;  1N5X A;  1F0X A;  4BC7 A;  2YVS A;  1DZN A;  1DIQ A;  1N61 C;  2GQT A;  1E8G A;  1MBB A;  1W1R A;  3GSY A;  3NVY B;  1FO4 A;  2EXR A;  1N60 C;  5G5H B;  3NVV B;  1WVF A;  3DQ0 A;  1HSK A;  3W8Z A;  2BVH A;  2OAI A;  1E8F A;  3VTE A;  2P13 A;  1FIQ B;  3FW7 A;  3FW9 A;  1W1K A;  5FXP A;  3I99 A;  4EC3 A;  4OAL A;  5G5G B;  2VAO A;  1AHU A;  1FFU C;  4JAY A;  2VFS A;  4BC9 A;  3LLB A;  3C0P A;  2QPM A;  1AHZ A;  2VFR A;  1QLT A;  4BBY A;  2Q85 A;  1VAO A;  1VDV A;  1ZXI C;  3BW7 A;  2E3T A;  2PLI A;  2W3S A;  4PVJ A;  5FXD A;  1JRO A;  1ZR6 A;  1WVE A;  4PVE A;  1N62 C;  3LAE A;  1WYG A;  5ADZ A;  1QLU A;  3FW8 A;  3S1D A;  5HHZ A;  4PVH A;  4XLO A;  2QKN A;  3SR6 B;  1E8H A;  3AMZ A;  3NVZ B;  2AXR A;  1DII A;  1E0Y A;  3B9J B;  2W3R A;  3TX1 A;  5FXE A;  2P4P A;  2R8D A;  5AE2 A;  3PM9 A;  3S1F A;  4PWB A;  2P3H A;  1SB3 B;  2Q4W A;  4PZF A;  2NQW A;  4ML8 A;  5FXF A;  4PYT A;  3S1C A;  3JS8 A;  4JB1 A;  1N63 C;  3AM9 A;  4ZOH B;  2VFU A;  2MBR A;  4MLA A;  4PVK A;  3D2J A;  3EUB 3;  4BCA A;  3TSJ A;  2BVF A;  4HG0 A;  3NRZ B;  5HMR A;  3D2D A;  3W8W A;  4PWC A;  5AE1 A;  1T3Q C;  1W1L A;  3ETR B;  1W1Q A;  1UXY A;  2RK5 A;  2O3G A;  2VFV A;  1W1J A;  1N5W C;  4O95 A;  1RM6 B;  3HRD C;  2GQU A;  2VFT A;  3D2H A;  1I19 A;  3KJM A;  1MBT A;  2W55 A;  1AHV A;  1W1M A;  3FWA A;  5D79 A;  3DED A;  1JRP A;  4UD8 A;  3TSH A;  5AE3 A;  2W54 A;  1V97 A;  4DNS A;  5HQX A;  3NS1 B;  2BVG A;  1FFV C;  3S1E A;  1W1S A;  2I0K A; 
#chains in the Genus database with same CATH topology
 1W1O A;  2PLS A;  2R2Z A;  3NVW B;  3AN1 A;  3W8X A;  1N5X A;  1F0X A;  4BC7 A;  2YVS A;  1DZN A;  3HSU A;  1DIQ A;  1N61 C;  2GQT A;  1E8G A;  1MBB A;  1W1R A;  3GSY A;  2IPI A;  3NVY B;  1FO4 A;  2EXR A;  1N60 C;  5G5H B;  3NVV B;  2Y3R A;  1WVF A;  3DQ0 A;  1HSK A;  3W8Z A;  2BVH A;  2OAI A;  1E8F A;  3VTE A;  3RJ8 A;  2P13 A;  1FIQ B;  3FW7 A;  3FW9 A;  1W1K A;  5FXP A;  3I99 A;  4EC3 A;  4OAL A;  5G5G B;  2VAO A;  1AHU A;  1FFU C;  4JAY A;  2VFS A;  4BC9 A;  3LLB A;  3C0P A;  2QPM A;  5K8E A;  1AHZ A;  2VFR A;  1QLT A;  4BBY A;  2Q85 A;  1VAO A;  1VDV A;  5L6F A;  1ZXI C;  3BW7 A;  2E3T A;  2PLI A;  2W3S A;  4PVJ A;  5FXD A;  3EJD B;  1JRO A;  1ZR6 A;  3PQB A;  1WVE A;  4PVE A;  1N62 C;  3LAE A;  1WYG A;  5ADZ A;  5I1W A;  1QLU A;  3FW8 A;  3S1D A;  3RJA A;  5HHZ A;  5I1V A;  4PVH A;  4XLO A;  2QKN A;  3SR6 B;  1E8H A;  3AMZ A;  3NVZ B;  2AXR A;  1DII A;  1E0Y A;  2WDW A;  3B9J B;  2W3R A;  2Y3S A;  3TX1 A;  5FXE A;  2P4P A;  2R8D A;  5AE2 A;  3PM9 A;  3S1F A;  4PWB A;  2P3H A;  1SB3 B;  2Q4W A;  4PZF A;  2NQW A;  4ML8 A;  5FXF A;  4PYT A;  3S1C A;  3JS8 A;  4JB1 A;  1N63 C;  3AM9 A;  4ZOH B;  2VFU A;  2MBR A;  3EJE B;  4MLA A;  3D2J A;  4PVK A;  3EUB 3;  2Y4G A;  4BCA A;  3TSJ A;  2BVF A;  4HG0 A;  3NRZ B;  5HMR A;  2UUU A;  3D2D A;  3W8W A;  4PWC A;  5AE1 A;  1T3Q C;  1W1L A;  3EJB B;  3ETR B;  2UUV A;  1W1Q A;  1UXY A;  2RK5 A;  5AWV A;  2O3G A;  2VFV A;  1W1J A;  1N5W C;  4O95 A;  1RM6 B;  3HRD C;  3POP A;  2GQU A;  2VFT A;  3D2H A;  1I19 A;  3KJM A;  1MBT A;  2W55 A;  2Y08 A;  1AHV A;  1W1M A;  3FWA A;  5L6G A;  5D79 A;  3DED A;  1JRP A;  4UD8 A;  3TSH A;  5AE3 A;  2W54 A;  1V97 A;  4DNS A;  5HQX A;  3NS1 B;  2BVG A;  1FFV C;  3S1E A;  1W1S A;  2I0K A; 
#chains in the Genus database with same CATH homology
 1W1O A;  2PLS A;  2R2Z A;  3NVW B;  3AN1 A;  3W8X A;  1N5X A;  1F0X A;  4BC7 A;  2YVS A;  1DZN A;  3HSU A;  1DIQ A;  1N61 C;  2GQT A;  1E8G A;  1MBB A;  1W1R A;  3GSY A;  2IPI A;  3NVY B;  1FO4 A;  2EXR A;  1N60 C;  5G5H B;  2Y3R A;  3NVV B;  1WVF A;  3DQ0 A;  1HSK A;  3W8Z A;  2BVH A;  2OAI A;  1E8F A;  3VTE A;  3RJ8 A;  2P13 A;  1FIQ B;  3FW7 A;  3FW9 A;  1W1K A;  5FXP A;  3I99 A;  4EC3 A;  4OAL A;  5G5G B;  2VAO A;  1AHU A;  1FFU C;  4JAY A;  2VFS A;  4BC9 A;  3LLB A;  3C0P A;  2QPM A;  5K8E A;  1AHZ A;  2VFR A;  1QLT A;  4BBY A;  2Q85 A;  1VAO A;  1VDV A;  5L6F A;  1ZXI C;  3BW7 A;  2E3T A;  2PLI A;  2W3S A;  4PVJ A;  5FXD A;  1JRO A;  1ZR6 A;  3PQB A;  1WVE A;  4PVE A;  1N62 C;  3LAE A;  1WYG A;  5ADZ A;  5I1W A;  1QLU A;  3FW8 A;  3S1D A;  3RJA A;  5HHZ A;  5I1V A;  4PVH A;  4XLO A;  2QKN A;  3SR6 B;  1E8H A;  3AMZ A;  3NVZ B;  2AXR A;  1DII A;  1E0Y A;  2WDW A;  3B9J B;  2W3R A;  2Y3S A;  3TX1 A;  5FXE A;  2P4P A;  2R8D A;  5AE2 A;  3PM9 A;  3S1F A;  4PWB A;  2P3H A;  1SB3 B;  2Q4W A;  4PZF A;  2NQW A;  4ML8 A;  5FXF A;  4PYT A;  3S1C A;  3JS8 A;  4JB1 A;  1N63 C;  3AM9 A;  4ZOH B;  2VFU A;  2MBR A;  4MLA A;  4PVK A;  3D2J A;  3EUB 3;  2Y4G A;  4BCA A;  3TSJ A;  2BVF A;  4HG0 A;  3NRZ B;  5HMR A;  2UUU A;  3D2D A;  3W8W A;  4PWC A;  5AE1 A;  1T3Q C;  1W1L A;  3ETR B;  2UUV A;  1W1Q A;  1UXY A;  2RK5 A;  5AWV A;  2O3G A;  2VFV A;  1W1J A;  1N5W C;  4O95 A;  1RM6 B;  3HRD C;  3POP A;  2GQU A;  2VFT A;  3D2H A;  1I19 A;  3KJM A;  1MBT A;  2W55 A;  2Y08 A;  1AHV A;  1W1M A;  3FWA A;  5L6G A;  5D79 A;  3DED A;  1JRP A;  4UD8 A;  3TSH A;  5AE3 A;  2W54 A;  1V97 A;  4DNS A;  5HQX A;  3NS1 B;  2BVG A;  1FFV C;  3S1E A;  1W1S A;  2I0K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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