5FXPA

Crystal structure of eugenol oxidase in complex with vanillin
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
525
structure length
525
Chain Sequence
b'TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords EUGENOL OXIDASE
publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
total genus 174
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxpA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxpA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxpA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxpA03
1AHZA 2QKNA 2W54A 2YVSA 1AHVA 1QLTA 1W1QA 2W3RA 2P13A 1T3QC 4EC3A 3S1CA 3NVZB 3D2DA 1HSKA 2R8DA 2BVFA 1ZR6A 3S1FA 3C0PA 5HQXA 2RK5A 3NVYB 3AMZA 2P3HA 2QPMA 1JROA 1UXYA 2VFVA 1V97A 2O3GA 1E8GA 4PYTA 3I99A 4MLAA 4PVHA 1SB3B 1FFVC 4PVEA 1W1LA 3JS8A 1FIQB 1AHUA 1F0XA 4JAYA 4BBYA 2BVHA 3S1EA 1W1MA 1W1OA 2GQUA 5FXPA 3SR6B 1WVEA 1RM6B 3DEDA 5AE2A 5G5GB 3VTEA 1ZXIC 3W8XA 1JRPA 4UD8A 5FXDA 2W55A 3W8ZA 3KJMA 2NQWA 2VAOA 2Q4WA 4BC9A 3TSHA 3DQ0A 2EXRA 3LLBA 5FXFA 4O95A 3FWAA 3NVVB 2VFSA 4PZFA 3S1DA 1E8FA 4BC7A 5HHZA 3LAEA 3NVWB 1W1KA 4HG0A 1E8HA 5G5HB 3PM9A 1N63C 5FXEA 1N5WC 1DIQA 4PVJA 5ADZA 1FFUC 2E3TA 2P4PA 1DZNA 2AXRA 1VDVA 2GQTA 3D2HA 1N61C 2VFRA 1QLUA 3D2JA 4ML8A 1N5XA 2I0KA 4OALA 1VAOA 4BCAA 1N60C 2Q85A 3W8WA 3ETRB 2PLSA 1I19A 4PVKA 3FW9A 3NS1B 5HMRA 4XLOA 2R2ZA 3AM9A 3B9JB 2OAIA 5AE3A 3GSYA 2W3SA 3FW7A 4PWCA 1WYGA 1W1RA 3FW8A 1W1JA 1DIIA 5D79A 1FO4A 3EUB3 2PLIA 1MBBA 1WVFA 3TSJA 2VFTA 1N62C 2BVGA 3TX1A 3NRZB 4ZOHB 1W1SA 1MBTA 3AN1A 4DNSA 3HRDC 1E0YA 3BW7A 4PWBA 2VFUA 2MBRA 4JB1A 5AE1A
chains in the Genus database with same CATH superfamily
1AHZA 2QKNA 2W54A 2YVSA 1AHVA 1QLTA 1W1QA 2W3RA 2P13A 1T3QC 4EC3A 3S1CA 3NVZB 3D2DA 5K8EA 1HSKA 2R8DA 2IPIA 2BVFA 1ZR6A 3S1FA 3C0PA 3RJ8A 5HQXA 2RK5A 3NVYB 3AMZA 2P3HA 2QPMA 1JROA 1UXYA 2VFVA 1V97A 2O3GA 1E8GA 4PYTA 3I99A 4MLAA 4PVHA 1SB3B 1FFVC 4PVEA 1W1LA 3JS8A 1FIQB 1AHUA 1F0XA 4JAYA 4BBYA 2BVHA 3S1EA 1W1MA 1W1OA 2GQUA 2UUUA 5FXPA 3SR6B 1WVEA 1RM6B 3DEDA 5AE2A 5G5GB 3VTEA 1ZXIC 3W8XA 1JRPA 4UD8A 5FXDA 2W55A 3W8ZA 3KJMA 2NQWA 2VAOA 2Q4WA 4BC9A 3TSHA 3DQ0A 2EXRA 5AWVA 3LLBA 3POPA 5FXFA 4O95A 3FWAA 2Y3SA 3NVVB 2VFSA 4PZFA 3S1DA 1E8FA 4BC7A 5HHZA 3LAEA 3NVWB 1W1KA 4HG0A 1E8HA 5G5HB 3PM9A 1N63C 5FXEA 1N5WC 1DIQA 4PVJA 5L6FA 5ADZA 1FFUC 2E3TA 3EJBB 2P4PA 1DZNA 2AXRA 1VDVA 2GQTA 3D2HA 2Y4GA 1N61C 2VFRA 1QLUA 3D2JA 4ML8A 1N5XA 2I0KA 4OALA 1VAOA 4BCAA 1N60C 2Q85A 3W8WA 3ETRB 2PLSA 1I19A 3EJDB 4PVKA 5I1WA 3PQBA 3FW9A 3NS1B 5HMRA 4XLOA 2Y08A 2R2ZA 3AM9A 3B9JB 3EJEB 2OAIA 5AE3A 3HSUA 3GSYA 2W3SA 3FW7A 4PWCA 1WYGA 1W1RA 3FW8A 1W1JA 2WDWA 1DIIA 5D79A 1FO4A 2Y3RA 3EUB3 2PLIA 1MBBA 3RJAA 1WVFA 3TSJA 2VFTA 1N62C 2BVGA 3TX1A 2UUVA 3NRZB 4ZOHB 1W1SA 1MBTA 3AN1A 4DNSA 3HRDC 1E0YA 3BW7A 4PWBA 2VFUA 5L6GA 2MBRA 4JB1A 5I1VA 5AE1A
chains in the Genus database with same CATH topology
1AHZA 2QKNA 2W54A 2YVSA 1AHVA 1QLTA 1W1QA 2W3RA 2P13A 1T3QC 4EC3A 3S1CA 3NVZB 3D2DA 5K8EA 1HSKA 2R8DA 2IPIA 2BVFA 1ZR6A 3S1FA 3C0PA 3RJ8A 5HQXA 2RK5A 3NVYB 3AMZA 2P3HA 2QPMA 1JROA 1UXYA 2VFVA 1V97A 2O3GA 1E8GA 4PYTA 3I99A 4MLAA 4PVHA 1SB3B 1FFVC 4PVEA 1W1LA 3JS8A 1FIQB 1AHUA 1F0XA 4JAYA 4BBYA 2BVHA 3S1EA 1W1MA 1W1OA 2GQUA 2UUUA 5FXPA 3SR6B 1WVEA 1RM6B 3DEDA 5AE2A 5G5GB 3VTEA 1ZXIC 3W8XA 1JRPA 4UD8A 5FXDA 2W55A 3W8ZA 3KJMA 2NQWA 2VAOA 2Q4WA 4BC9A 3TSHA 3DQ0A 2EXRA 5AWVA 3LLBA 3POPA 5FXFA 4O95A 3FWAA 2Y3SA 3NVVB 2VFSA 4PZFA 3S1DA 1E8FA 4BC7A 5HHZA 3LAEA 3NVWB 1W1KA 4HG0A 1E8HA 5G5HB 3PM9A 1N63C 5FXEA 1N5WC 1DIQA 4PVJA 5L6FA 5ADZA 1FFUC 2E3TA 2P4PA 1DZNA 2AXRA 1VDVA 2GQTA 3D2HA 2Y4GA 1N61C 2VFRA 1QLUA 3D2JA 4ML8A 1N5XA 2I0KA 4OALA 1VAOA 4BCAA 1N60C 2Q85A 3W8WA 3ETRB 2PLSA 1I19A 4PVKA 5I1WA 3PQBA 3FW9A 3NS1B 5HMRA 4XLOA 2Y08A 2R2ZA 3AM9A 3B9JB 2OAIA 5AE3A 3HSUA 3GSYA 2W3SA 3FW7A 4PWCA 1WYGA 1W1RA 3FW8A 1W1JA 2WDWA 1DIIA 5D79A 1FO4A 2Y3RA 3EUB3 2PLIA 1MBBA 3RJAA 1WVFA 3TSJA 2VFTA 1N62C 2BVGA 3TX1A 2UUVA 3NRZB 4ZOHB 1W1SA 1MBTA 3AN1A 4DNSA 3HRDC 1E0YA 3BW7A 4PWBA 2VFUA 5L6GA 2MBRA 4JB1A 5I1VA 5AE1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AHZ A;  2QKN A;  2W54 A;  2YVS A;  1AHV A;  1QLT A;  1W1Q A;  2W3R A;  2P13 A;  1T3Q C;  4EC3 A;  3S1C A;  3NVZ B;  3D2D A;  1HSK A;  2R8D A;  2BVF A;  1ZR6 A;  3S1F A;  3C0P A;  5HQX A;  2RK5 A;  3NVY B;  3AMZ A;  2P3H A;  2QPM A;  1JRO A;  1UXY A;  2VFV A;  1V97 A;  2O3G A;  1E8G A;  4PYT A;  3I99 A;  4MLA A;  4PVH A;  1SB3 B;  1FFV C;  4PVE A;  1W1L A;  3JS8 A;  1FIQ B;  1AHU A;  1F0X A;  4JAY A;  4BBY A;  2BVH A;  3S1E A;  1W1M A;  1W1O A;  2GQU A;  5FXP A;  3SR6 B;  1WVE A;  1RM6 B;  3DED A;  5AE2 A;  5G5G B;  3VTE A;  1ZXI C;  3W8X A;  1JRP A;  4UD8 A;  5FXD A;  2W55 A;  3W8Z A;  3KJM A;  2NQW A;  2VAO A;  2Q4W A;  4BC9 A;  3TSH A;  3DQ0 A;  2EXR A;  3LLB A;  5FXF A;  4O95 A;  3FWA A;  3NVV B;  2VFS A;  4PZF A;  3S1D A;  1E8F A;  4BC7 A;  5HHZ A;  3LAE A;  3NVW B;  1W1K A;  4HG0 A;  1E8H A;  5G5H B;  3PM9 A;  1N63 C;  5FXE A;  1N5W C;  1DIQ A;  4PVJ A;  5ADZ A;  1FFU C;  2E3T A;  2P4P A;  1DZN A;  2AXR A;  1VDV A;  2GQT A;  3D2H A;  1N61 C;  2VFR A;  1QLU A;  3D2J A;  4ML8 A;  1N5X A;  2I0K A;  4OAL A;  1VAO A;  4BCA A;  1N60 C;  2Q85 A;  3W8W A;  3ETR B;  2PLS A;  1I19 A;  4PVK A;  3FW9 A;  3NS1 B;  5HMR A;  4XLO A;  2R2Z A;  3AM9 A;  3B9J B;  2OAI A;  5AE3 A;  3GSY A;  2W3S A;  3FW7 A;  4PWC A;  1WYG A;  1W1R A;  3FW8 A;  1W1J A;  1DII A;  5D79 A;  1FO4 A;  3EUB 3;  2PLI A;  1MBB A;  1WVF A;  3TSJ A;  2VFT A;  1N62 C;  2BVG A;  3TX1 A;  3NRZ B;  4ZOH B;  1W1S A;  1MBT A;  3AN1 A;  4DNS A;  3HRD C;  1E0Y A;  3BW7 A;  4PWB A;  2VFU A;  2MBR A;  4JB1 A;  5AE1 A; 
#chains in the Genus database with same CATH topology
 1AHZ A;  2QKN A;  2W54 A;  2YVS A;  1AHV A;  1QLT A;  1W1Q A;  2W3R A;  2P13 A;  1T3Q C;  4EC3 A;  3S1C A;  3NVZ B;  3D2D A;  5K8E A;  1HSK A;  2R8D A;  2IPI A;  2BVF A;  1ZR6 A;  3S1F A;  3C0P A;  3RJ8 A;  5HQX A;  2RK5 A;  3NVY B;  3AMZ A;  2P3H A;  2QPM A;  1JRO A;  1UXY A;  2VFV A;  1V97 A;  2O3G A;  1E8G A;  4PYT A;  3I99 A;  4MLA A;  4PVH A;  1SB3 B;  1FFV C;  4PVE A;  1W1L A;  3JS8 A;  1FIQ B;  1AHU A;  1F0X A;  4JAY A;  4BBY A;  2BVH A;  3S1E A;  1W1M A;  1W1O A;  2GQU A;  2UUU A;  5FXP A;  3SR6 B;  1WVE A;  1RM6 B;  3DED A;  5AE2 A;  5G5G B;  3VTE A;  1ZXI C;  3W8X A;  1JRP A;  4UD8 A;  5FXD A;  2W55 A;  3W8Z A;  3KJM A;  2NQW A;  2VAO A;  2Q4W A;  4BC9 A;  3TSH A;  3DQ0 A;  2EXR A;  5AWV A;  3LLB A;  3POP A;  5FXF A;  4O95 A;  3FWA A;  2Y3S A;  3NVV B;  2VFS A;  4PZF A;  3S1D A;  1E8F A;  4BC7 A;  5HHZ A;  3LAE A;  3NVW B;  1W1K A;  4HG0 A;  1E8H A;  5G5H B;  3PM9 A;  1N63 C;  5FXE A;  1N5W C;  1DIQ A;  4PVJ A;  5L6F A;  5ADZ A;  1FFU C;  2E3T A;  3EJB B;  2P4P A;  1DZN A;  2AXR A;  1VDV A;  2GQT A;  3D2H A;  2Y4G A;  1N61 C;  2VFR A;  1QLU A;  3D2J A;  4ML8 A;  1N5X A;  2I0K A;  4OAL A;  1VAO A;  4BCA A;  1N60 C;  2Q85 A;  3W8W A;  3ETR B;  2PLS A;  1I19 A;  3EJD B;  4PVK A;  5I1W A;  3PQB A;  3FW9 A;  3NS1 B;  5HMR A;  4XLO A;  2Y08 A;  2R2Z A;  3AM9 A;  3B9J B;  3EJE B;  2OAI A;  5AE3 A;  3HSU A;  3GSY A;  2W3S A;  3FW7 A;  4PWC A;  1WYG A;  1W1R A;  3FW8 A;  1W1J A;  2WDW A;  1DII A;  5D79 A;  1FO4 A;  2Y3R A;  3EUB 3;  2PLI A;  1MBB A;  3RJA A;  1WVF A;  3TSJ A;  2VFT A;  1N62 C;  2BVG A;  3TX1 A;  2UUV A;  3NRZ B;  4ZOH B;  1W1S A;  1MBT A;  3AN1 A;  4DNS A;  3HRD C;  1E0Y A;  3BW7 A;  4PWB A;  2VFU A;  5L6G A;  2MBR A;  4JB1 A;  5I1V A;  5AE1 A; 
#chains in the Genus database with same CATH homology
 1AHZ A;  2QKN A;  2W54 A;  2YVS A;  1AHV A;  1QLT A;  1W1Q A;  2W3R A;  2P13 A;  1T3Q C;  4EC3 A;  3S1C A;  3NVZ B;  3D2D A;  5K8E A;  1HSK A;  2R8D A;  2IPI A;  2BVF A;  1ZR6 A;  3S1F A;  3C0P A;  3RJ8 A;  5HQX A;  2RK5 A;  3NVY B;  3AMZ A;  2P3H A;  2QPM A;  1JRO A;  1UXY A;  2VFV A;  1V97 A;  2O3G A;  1E8G A;  4PYT A;  3I99 A;  4MLA A;  4PVH A;  1SB3 B;  1FFV C;  4PVE A;  1W1L A;  3JS8 A;  1FIQ B;  1AHU A;  1F0X A;  4JAY A;  4BBY A;  2BVH A;  3S1E A;  1W1M A;  1W1O A;  2GQU A;  2UUU A;  5FXP A;  3SR6 B;  1WVE A;  1RM6 B;  3DED A;  5AE2 A;  5G5G B;  3VTE A;  1ZXI C;  3W8X A;  1JRP A;  4UD8 A;  5FXD A;  2W55 A;  3W8Z A;  3KJM A;  2NQW A;  2VAO A;  2Q4W A;  4BC9 A;  3TSH A;  3DQ0 A;  2EXR A;  5AWV A;  3LLB A;  3POP A;  5FXF A;  4O95 A;  3FWA A;  2Y3S A;  3NVV B;  2VFS A;  4PZF A;  3S1D A;  1E8F A;  4BC7 A;  5HHZ A;  3LAE A;  3NVW B;  1W1K A;  4HG0 A;  1E8H A;  5G5H B;  3PM9 A;  1N63 C;  5FXE A;  1N5W C;  1DIQ A;  4PVJ A;  5L6F A;  5ADZ A;  1FFU C;  2E3T A;  2P4P A;  1DZN A;  2AXR A;  1VDV A;  2GQT A;  3D2H A;  2Y4G A;  1N61 C;  2VFR A;  1QLU A;  3D2J A;  4ML8 A;  1N5X A;  2I0K A;  4OAL A;  1VAO A;  4BCA A;  1N60 C;  2Q85 A;  3W8W A;  3ETR B;  2PLS A;  1I19 A;  4PVK A;  5I1W A;  3PQB A;  3FW9 A;  3NS1 B;  5HMR A;  4XLO A;  2Y08 A;  2R2Z A;  3AM9 A;  3B9J B;  2OAI A;  5AE3 A;  3HSU A;  3GSY A;  2W3S A;  3FW7 A;  4PWC A;  1WYG A;  1W1R A;  3FW8 A;  1W1J A;  2WDW A;  1DII A;  5D79 A;  1FO4 A;  2Y3R A;  3EUB 3;  2PLI A;  1MBB A;  3RJA A;  1WVF A;  3TSJ A;  2VFT A;  1N62 C;  2BVG A;  3TX1 A;  2UUV A;  3NRZ B;  4ZOH B;  1W1S A;  1MBT A;  3AN1 A;  4DNS A;  3HRD C;  1E0Y A;  3BW7 A;  4PWB A;  2VFU A;  5L6G A;  2MBR A;  4JB1 A;  5I1V A;  5AE1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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