5FXPA

Crystal structure of eugenol oxidase in complex with vanillin
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
molecule keywords EUGENOL OXIDASE
total genus 174
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxpA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxpA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxpA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxpA03
1N5XA 4PVEA 1ZR6A 3TX1A 4BCAA 3NVWB 3KJMA 2VFUA 4PYTA 4MLAA 1AHZA 2W55A 3TSHA 3W8WA 2GQTA 4PWBA 1MBBA 3AN1A 2QKNA 3AMZA 2YVSA 3JS8A 2GQUA 1MBTA 5HMRA 1WVFA 2VFRA 1E8HA 1QLUA 3NVVB 5G5GB 5ADZA 1WVEA 1W1KA 1N5WC 3D2HA 4ZOHB 2P4PA 2MBRA 4PWCA 3S1DA 5HQXA 2OAIA 4O95A 3TSJA 1ZXIC 1FFUC 1VDVA 4PZFA 1W1JA 3LAEA 2W3SA 1I19A 1JRPA 1HSKA 1FFVC 3LLBA 4PVJA 2W3RA 1FIQB 2BVGA 2W54A 3C0PA 4PVKA 1DZNA 4ML8A 5AE1A 1W1LA 2PLIA 1AHVA 5D79A 3S1EA 3NS1B 2R8DA 4PVHA 5FXDA 4UD8A 3FWAA 1SB3B 3B9JB 1N63C 3W8XA 4BC7A 3HRDC 1JROA 5AE2A 3S1FA 3D2JA 2Q4WA 3S1CA 3W8ZA 1UXYA 2Q85A 2BVFA 2PLSA 3PM9A 3EUB3 3BW7A 1N60C 1E8GA 1W1SA 4HG0A 5AE3A 4JAYA 3FW8A 2O3GA 5FXEA 2VFTA 3FW7A 3NVZB 5FXPA 3DQ0A 2NQWA 3DEDA 1E0YA 2VFSA 1F0XA 4OALA 4BC9A 4EC3A 2QPMA 1T3QC 5G5HB 3GSYA 2AXRA 2R2ZA 1WYGA 2P13A 4BBYA 1RM6B 2EXRA 1VAOA 1W1MA 3SR6B 2P3HA 1E8FA 2E3TA 5HHZA 1W1QA 1N62C 3D2DA 3ETRB 2RK5A 1W1RA 1V97A 1AHUA 4DNSA 3FW9A 1DIIA 3NRZB 1W1OA 4JB1A 3NVYB 1N61C 1DIQA 2I0KA 1QLTA 3VTEA 5FXFA 3I99A 3AM9A 2VFVA 4XLOA 2VAOA 2BVHA 1FO4A
chains in the Genus database with same CATH superfamily
1N5XA 4PVEA 1ZR6A 3TX1A 4BCAA 3NVWB 3KJMA 2VFUA 2Y08A 4PYTA 4MLAA 1AHZA 2W55A 3TSHA 3W8WA 2GQTA 4PWBA 1MBBA 3AN1A 2QKNA 3AMZA 2YVSA 3JS8A 3EJEB 2GQUA 1MBTA 5HMRA 3EJBB 1WVFA 2VFRA 1E8HA 1QLUA 3NVVB 5G5GB 5ADZA 1WVEA 1W1KA 1N5WC 3D2HA 4ZOHB 2P4PA 2UUUA 2MBRA 4PWCA 3S1DA 5HQXA 2OAIA 4O95A 3TSJA 1ZXIC 3HSUA 1FFUC 1VDVA 4PZFA 1W1JA 3LAEA 3POPA 2W3SA 1I19A 1JRPA 1HSKA 5I1VA 2Y3SA 1FFVC 3LLBA 4PVJA 2W3RA 1FIQB 2BVGA 2IPIA 2W54A 3C0PA 4PVKA 1DZNA 4ML8A 5AE1A 1W1LA 2PLIA 2WDWA 3RJAA 1AHVA 5D79A 3S1EA 3NS1B 2R8DA 4PVHA 5FXDA 4UD8A 3EJDB 3FWAA 1SB3B 3B9JB 5L6GA 1N63C 3W8XA 4BC7A 3HRDC 1JROA 2UUVA 5AE2A 3S1FA 3D2JA 2Q4WA 3S1CA 3W8ZA 5I1WA 1UXYA 2Q85A 2BVFA 2PLSA 3PM9A 3EUB3 3BW7A 1N60C 1E8GA 2Y3RA 5K8EA 1W1SA 4HG0A 5AE3A 4JAYA 3FW8A 3PQBA 2O3GA 5FXEA 2VFTA 3FW7A 3NVZB 5FXPA 3DQ0A 2NQWA 3DEDA 1E0YA 2VFSA 1F0XA 4OALA 4BC9A 4EC3A 5AWVA 5L6FA 2QPMA 1T3QC 5G5HB 3RJ8A 3GSYA 2AXRA 2R2ZA 1WYGA 2P13A 4BBYA 1RM6B 2EXRA 1VAOA 1W1MA 3SR6B 2P3HA 1E8FA 2E3TA 5HHZA 1W1QA 1N62C 3D2DA 3ETRB 2RK5A 1W1RA 1V97A 1AHUA 4DNSA 3FW9A 2Y4GA 1DIIA 3NRZB 1W1OA 4JB1A 3NVYB 1N61C 1DIQA 2I0KA 1QLTA 3VTEA 5FXFA 3I99A 3AM9A 2VFVA 4XLOA 2VAOA 2BVHA 1FO4A
chains in the Genus database with same CATH topology
1N5XA 4PVEA 1ZR6A 3TX1A 4BCAA 3NVWB 3KJMA 2VFUA 2Y08A 4PYTA 4MLAA 1AHZA 2W55A 3TSHA 3W8WA 2GQTA 4PWBA 1MBBA 3AN1A 2QKNA 3AMZA 2YVSA 3JS8A 2GQUA 1MBTA 5HMRA 1WVFA 2VFRA 1E8HA 1QLUA 3NVVB 5G5GB 5ADZA 1WVEA 1W1KA 1N5WC 3D2HA 4ZOHB 2P4PA 2UUUA 2MBRA 4PWCA 3S1DA 5HQXA 2OAIA 4O95A 3TSJA 1ZXIC 3HSUA 1FFUC 1VDVA 4PZFA 1W1JA 3LAEA 3POPA 2W3SA 1I19A 1JRPA 1HSKA 5I1VA 2Y3SA 1FFVC 3LLBA 4PVJA 2W3RA 1FIQB 2BVGA 2IPIA 2W54A 3C0PA 4PVKA 1DZNA 4ML8A 5AE1A 1W1LA 2PLIA 2WDWA 3RJAA 1AHVA 5D79A 3S1EA 3NS1B 2R8DA 4PVHA 5FXDA 4UD8A 3FWAA 1SB3B 3B9JB 5L6GA 1N63C 3W8XA 4BC7A 3HRDC 1JROA 2UUVA 5AE2A 3S1FA 3D2JA 2Q4WA 3S1CA 3W8ZA 5I1WA 1UXYA 2Q85A 2BVFA 2PLSA 3PM9A 3EUB3 3BW7A 1N60C 1E8GA 2Y3RA 5K8EA 1W1SA 4HG0A 5AE3A 4JAYA 3FW8A 3PQBA 2O3GA 5FXEA 2VFTA 3FW7A 3NVZB 5FXPA 3DQ0A 2NQWA 3DEDA 1E0YA 2VFSA 1F0XA 4OALA 4BC9A 4EC3A 5AWVA 5L6FA 2QPMA 1T3QC 5G5HB 3RJ8A 3GSYA 2AXRA 2R2ZA 1WYGA 2P13A 4BBYA 1RM6B 2EXRA 1VAOA 1W1MA 3SR6B 2P3HA 1E8FA 2E3TA 5HHZA 1W1QA 1N62C 3D2DA 3ETRB 2RK5A 1W1RA 1V97A 1AHUA 4DNSA 3FW9A 2Y4GA 1DIIA 3NRZB 1W1OA 4JB1A 3NVYB 1N61C 1DIQA 2I0KA 1QLTA 3VTEA 5FXFA 3I99A 3AM9A 2VFVA 4XLOA 2VAOA 2BVHA 1FO4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N5X A;  4PVE A;  1ZR6 A;  3TX1 A;  4BCA A;  3NVW B;  3KJM A;  2VFU A;  4PYT A;  4MLA A;  1AHZ A;  2W55 A;  3TSH A;  3W8W A;  2GQT A;  4PWB A;  1MBB A;  3AN1 A;  2QKN A;  3AMZ A;  2YVS A;  3JS8 A;  2GQU A;  1MBT A;  5HMR A;  1WVF A;  2VFR A;  1E8H A;  1QLU A;  3NVV B;  5G5G B;  5ADZ A;  1WVE A;  1W1K A;  1N5W C;  3D2H A;  4ZOH B;  2P4P A;  2MBR A;  4PWC A;  3S1D A;  5HQX A;  2OAI A;  4O95 A;  3TSJ A;  1ZXI C;  1FFU C;  1VDV A;  4PZF A;  1W1J A;  3LAE A;  2W3S A;  1I19 A;  1JRP A;  1HSK A;  1FFV C;  3LLB A;  4PVJ A;  2W3R A;  1FIQ B;  2BVG A;  2W54 A;  3C0P A;  4PVK A;  1DZN A;  4ML8 A;  5AE1 A;  1W1L A;  2PLI A;  1AHV A;  5D79 A;  3S1E A;  3NS1 B;  2R8D A;  4PVH A;  5FXD A;  4UD8 A;  3FWA A;  1SB3 B;  3B9J B;  1N63 C;  3W8X A;  4BC7 A;  3HRD C;  1JRO A;  5AE2 A;  3S1F A;  3D2J A;  2Q4W A;  3S1C A;  3W8Z A;  1UXY A;  2Q85 A;  2BVF A;  2PLS A;  3PM9 A;  3EUB 3;  3BW7 A;  1N60 C;  1E8G A;  1W1S A;  4HG0 A;  5AE3 A;  4JAY A;  3FW8 A;  2O3G A;  5FXE A;  2VFT A;  3FW7 A;  3NVZ B;  5FXP A;  3DQ0 A;  2NQW A;  3DED A;  1E0Y A;  2VFS A;  1F0X A;  4OAL A;  4BC9 A;  4EC3 A;  2QPM A;  1T3Q C;  5G5H B;  3GSY A;  2AXR A;  2R2Z A;  1WYG A;  2P13 A;  4BBY A;  1RM6 B;  2EXR A;  1VAO A;  1W1M A;  3SR6 B;  2P3H A;  1E8F A;  2E3T A;  5HHZ A;  1W1Q A;  1N62 C;  3D2D A;  3ETR B;  2RK5 A;  1W1R A;  1V97 A;  1AHU A;  4DNS A;  3FW9 A;  1DII A;  3NRZ B;  1W1O A;  4JB1 A;  3NVY B;  1N61 C;  1DIQ A;  2I0K A;  1QLT A;  3VTE A;  5FXF A;  3I99 A;  3AM9 A;  2VFV A;  4XLO A;  2VAO A;  2BVH A;  1FO4 A; 
#chains in the Genus database with same CATH topology
 1N5X A;  4PVE A;  1ZR6 A;  3TX1 A;  4BCA A;  3NVW B;  3KJM A;  2VFU A;  2Y08 A;  4PYT A;  4MLA A;  1AHZ A;  2W55 A;  3TSH A;  3W8W A;  2GQT A;  4PWB A;  1MBB A;  3AN1 A;  2QKN A;  3AMZ A;  2YVS A;  3JS8 A;  3EJE B;  2GQU A;  1MBT A;  5HMR A;  3EJB B;  1WVF A;  2VFR A;  1E8H A;  1QLU A;  3NVV B;  5G5G B;  5ADZ A;  1WVE A;  1W1K A;  1N5W C;  3D2H A;  4ZOH B;  2P4P A;  2UUU A;  2MBR A;  4PWC A;  3S1D A;  5HQX A;  2OAI A;  4O95 A;  3TSJ A;  1ZXI C;  3HSU A;  1FFU C;  1VDV A;  4PZF A;  1W1J A;  3LAE A;  3POP A;  2W3S A;  1I19 A;  1JRP A;  1HSK A;  5I1V A;  2Y3S A;  1FFV C;  3LLB A;  4PVJ A;  2W3R A;  1FIQ B;  2BVG A;  2IPI A;  2W54 A;  3C0P A;  4PVK A;  1DZN A;  4ML8 A;  5AE1 A;  1W1L A;  2PLI A;  2WDW A;  3RJA A;  1AHV A;  5D79 A;  3S1E A;  3NS1 B;  2R8D A;  4PVH A;  5FXD A;  4UD8 A;  3EJD B;  3FWA A;  1SB3 B;  3B9J B;  5L6G A;  1N63 C;  3W8X A;  4BC7 A;  3HRD C;  1JRO A;  2UUV A;  5AE2 A;  3S1F A;  3D2J A;  2Q4W A;  3S1C A;  3W8Z A;  5I1W A;  1UXY A;  2Q85 A;  2BVF A;  2PLS A;  3PM9 A;  3EUB 3;  3BW7 A;  1N60 C;  1E8G A;  2Y3R A;  5K8E A;  1W1S A;  4HG0 A;  5AE3 A;  4JAY A;  3FW8 A;  3PQB A;  2O3G A;  5FXE A;  2VFT A;  3FW7 A;  3NVZ B;  5FXP A;  3DQ0 A;  2NQW A;  3DED A;  1E0Y A;  2VFS A;  1F0X A;  4OAL A;  4BC9 A;  4EC3 A;  5AWV A;  5L6F A;  2QPM A;  1T3Q C;  5G5H B;  3RJ8 A;  3GSY A;  2AXR A;  2R2Z A;  1WYG A;  2P13 A;  4BBY A;  1RM6 B;  2EXR A;  1VAO A;  1W1M A;  3SR6 B;  2P3H A;  1E8F A;  2E3T A;  5HHZ A;  1W1Q A;  1N62 C;  3D2D A;  3ETR B;  2RK5 A;  1W1R A;  1V97 A;  1AHU A;  4DNS A;  3FW9 A;  2Y4G A;  1DII A;  3NRZ B;  1W1O A;  4JB1 A;  3NVY B;  1N61 C;  1DIQ A;  2I0K A;  1QLT A;  3VTE A;  5FXF A;  3I99 A;  3AM9 A;  2VFV A;  4XLO A;  2VAO A;  2BVH A;  1FO4 A; 
#chains in the Genus database with same CATH homology
 1N5X A;  4PVE A;  1ZR6 A;  3TX1 A;  4BCA A;  3NVW B;  3KJM A;  2VFU A;  2Y08 A;  4PYT A;  4MLA A;  1AHZ A;  2W55 A;  3TSH A;  3W8W A;  2GQT A;  4PWB A;  1MBB A;  3AN1 A;  2QKN A;  3AMZ A;  2YVS A;  3JS8 A;  2GQU A;  1MBT A;  5HMR A;  1WVF A;  2VFR A;  1E8H A;  1QLU A;  3NVV B;  5G5G B;  5ADZ A;  1WVE A;  1W1K A;  1N5W C;  3D2H A;  4ZOH B;  2P4P A;  2UUU A;  2MBR A;  4PWC A;  3S1D A;  5HQX A;  2OAI A;  4O95 A;  3TSJ A;  1ZXI C;  3HSU A;  1FFU C;  1VDV A;  4PZF A;  1W1J A;  3LAE A;  3POP A;  2W3S A;  1I19 A;  1JRP A;  1HSK A;  5I1V A;  2Y3S A;  1FFV C;  3LLB A;  4PVJ A;  2W3R A;  1FIQ B;  2BVG A;  2IPI A;  2W54 A;  3C0P A;  4PVK A;  1DZN A;  4ML8 A;  5AE1 A;  1W1L A;  2PLI A;  2WDW A;  3RJA A;  1AHV A;  5D79 A;  3S1E A;  3NS1 B;  2R8D A;  4PVH A;  5FXD A;  4UD8 A;  3FWA A;  1SB3 B;  3B9J B;  5L6G A;  1N63 C;  3W8X A;  4BC7 A;  3HRD C;  1JRO A;  2UUV A;  5AE2 A;  3S1F A;  3D2J A;  2Q4W A;  3S1C A;  3W8Z A;  5I1W A;  1UXY A;  2Q85 A;  2BVF A;  2PLS A;  3PM9 A;  3EUB 3;  3BW7 A;  1N60 C;  1E8G A;  2Y3R A;  5K8E A;  1W1S A;  4HG0 A;  5AE3 A;  4JAY A;  3FW8 A;  3PQB A;  2O3G A;  5FXE A;  2VFT A;  3FW7 A;  3NVZ B;  5FXP A;  3DQ0 A;  2NQW A;  3DED A;  1E0Y A;  2VFS A;  1F0X A;  4OAL A;  4BC9 A;  4EC3 A;  5AWV A;  5L6F A;  2QPM A;  1T3Q C;  5G5H B;  3RJ8 A;  3GSY A;  2AXR A;  2R2Z A;  1WYG A;  2P13 A;  4BBY A;  1RM6 B;  2EXR A;  1VAO A;  1W1M A;  3SR6 B;  2P3H A;  1E8F A;  2E3T A;  5HHZ A;  1W1Q A;  1N62 C;  3D2D A;  3ETR B;  2RK5 A;  1W1R A;  1V97 A;  1AHU A;  4DNS A;  3FW9 A;  2Y4G A;  1DII A;  3NRZ B;  1W1O A;  4JB1 A;  3NVY B;  1N61 C;  1DIQ A;  2I0K A;  1QLT A;  3VTE A;  5FXF A;  3I99 A;  3AM9 A;  2VFV A;  4XLO A;  2VAO A;  2BVH A;  1FO4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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