5FXPA

Crystal structure of eugenol oxidase in complex with vanillin
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
molecule keywords EUGENOL OXIDASE
total genus 174
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxpA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxpA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxpA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxpA03
1F0XA 1SB3B 2P3HA 1MBBA 1W1QA 3W8WA 2BVGA 4HG0A 3BW7A 3I99A 2AXRA 2MBRA 2I0KA 4BCAA 4OALA 3NVWB 1N5XA 3AN1A 2EXRA 3D2DA 1W1LA 1ZR6A 2Q85A 3ETRB 1DIIA 2VFRA 2VAOA 3NVYB 1DZNA 1E8GA 3LLBA 1VDVA 1E0YA 4PWBA 1W1RA 2GQTA 1W1KA 3TSHA 4O95A 3KJMA 3S1FA 2W54A 5HQXA 5FXDA 2BVFA 2W3RA 3S1CA 3PM9A 3VTEA 3FW7A 3NVZB 1V97A 2P13A 1WVFA 5G5HB 1AHVA 5D79A 3S1DA 4ML8A 4UD8A 4JAYA 3NVVB 4BC9A 2VFUA 4PYTA 3FW9A 2NQWA 3AM9A 2VFTA 2VFVA 4XLOA 3EUB3 1FO4A 3FWAA 3C0PA 1T3QC 2OAIA 1N62C 3B9JB 3LAEA 2QPMA 5AE2A 5FXFA 2PLIA 4PWCA 3DEDA 2R2ZA 1AHUA 2W3SA 1QLTA 2Q4WA 1E8FA 2PLSA 1WYGA 1HSKA 5HMRA 5AE3A 1UXYA 2RK5A 5ADZA 1FFVC 3AMZA 5HHZA 4ZOHB 2GQUA 3JS8A 1ZXIC 4PVHA 3NS1B 1JRPA 4PVEA 1N63C 3FW8A 1DIQA 2QKNA 3NRZB 2R8DA 4JB1A 2YVSA 3SR6B 1JROA 1N60C 4EC3A 1MBTA 5FXPA 1W1MA 1AHZA 1W1SA 4PVJA 3TX1A 3D2HA 2O3GA 1N61C 2VFSA 1E8HA 3S1EA 2BVHA 1RM6B 4MLAA 4PVKA 4DNSA 5FXEA 3HRDC 4BBYA 3TSJA 1VAOA 2P4PA 5AE1A 1N5WC 1WVEA 1QLUA 5G5GB 1I19A 1W1JA 1FFUC 3D2JA 1W1OA 3DQ0A 4PZFA 3W8ZA 2E3TA 3GSYA 1FIQB 3W8XA 2W55A 4BC7A
chains in the Genus database with same CATH superfamily
1F0XA 1SB3B 2P3HA 1MBBA 1W1QA 3W8WA 2BVGA 4HG0A 3BW7A 3I99A 2AXRA 2MBRA 2I0KA 4BCAA 3NVWB 4OALA 1N5XA 3AN1A 2EXRA 3D2DA 1W1LA 3EJDB 1ZR6A 2Q85A 2IPIA 3ETRB 1DIIA 2VFRA 2VAOA 3NVYB 1DZNA 3HSUA 1E8GA 3LLBA 1VDVA 1E0YA 4PWBA 1W1RA 2GQTA 1W1KA 3TSHA 4O95A 3KJMA 3S1FA 2W54A 5HQXA 5FXDA 2BVFA 2W3RA 3S1CA 5L6FA 3PM9A 3VTEA 3FW7A 3NVZB 1V97A 2P13A 1WVFA 5G5HB 1AHVA 5D79A 3S1DA 2Y4GA 4ML8A 4UD8A 4JAYA 3NVVB 4BC9A 2VFUA 4PYTA 3FW9A 2NQWA 3AM9A 2UUVA 2VFTA 2VFVA 4XLOA 3EUB3 1FO4A 3FWAA 3C0PA 5I1WA 1T3QC 2OAIA 5L6GA 1N62C 3B9JB 3RJ8A 3LAEA 5K8EA 2QPMA 5AE2A 5FXFA 2PLIA 4PWCA 3DEDA 2R2ZA 1AHUA 2W3SA 1QLTA 2Q4WA 1E8FA 3PQBA 2PLSA 1WYGA 1HSKA 5HMRA 5AE3A 1UXYA 2RK5A 2WDWA 5ADZA 1FFVC 3AMZA 5HHZA 2Y3SA 4ZOHB 2GQUA 3JS8A 1ZXIC 4PVHA 3NS1B 1JRPA 4PVEA 3POPA 1N63C 3FW8A 1DIQA 2QKNA 3NRZB 2R8DA 2UUUA 4JB1A 2YVSA 3SR6B 1JROA 1N60C 4EC3A 1MBTA 5FXPA 3EJEB 1W1MA 1AHZA 1W1SA 4PVJA 3TX1A 3D2HA 2O3GA 1N61C 2VFSA 3RJAA 1E8HA 3S1EA 2BVHA 1RM6B 4MLAA 2Y08A 4PVKA 4DNSA 2Y3RA 5FXEA 3HRDC 4BBYA 3TSJA 5I1VA 1VAOA 2P4PA 5AE1A 1N5WC 5AWVA 1WVEA 1QLUA 5G5GB 1I19A 1W1JA 1FFUC 3D2JA 1W1OA 3DQ0A 4PZFA 3W8ZA 2E3TA 3GSYA 1FIQB 3W8XA 2W55A 3EJBB 4BC7A
chains in the Genus database with same CATH topology
1F0XA 1SB3B 2P3HA 1MBBA 1W1QA 3W8WA 2BVGA 4HG0A 3BW7A 3I99A 2AXRA 2MBRA 2I0KA 4BCAA 4OALA 3NVWB 1N5XA 3AN1A 2EXRA 3D2DA 1W1LA 1ZR6A 2Q85A 2IPIA 3ETRB 1DIIA 2VFRA 2VAOA 3NVYB 1DZNA 3HSUA 1E8GA 3LLBA 1VDVA 1E0YA 4PWBA 1W1RA 2GQTA 1W1KA 3TSHA 4O95A 3KJMA 3S1FA 2W54A 5HQXA 5FXDA 2BVFA 2W3RA 3S1CA 5L6FA 3PM9A 3VTEA 3FW7A 3NVZB 1V97A 2P13A 1WVFA 5G5HB 1AHVA 5D79A 3S1DA 2Y4GA 4ML8A 4UD8A 4JAYA 3NVVB 4BC9A 2VFUA 4PYTA 3FW9A 2NQWA 3AM9A 2UUVA 2VFTA 2VFVA 4XLOA 3EUB3 1FO4A 3FWAA 3C0PA 5I1WA 1T3QC 2OAIA 5L6GA 1N62C 3B9JB 3RJ8A 3LAEA 5K8EA 2QPMA 5AE2A 5FXFA 2PLIA 4PWCA 3DEDA 2R2ZA 1AHUA 2W3SA 1QLTA 2Q4WA 1E8FA 3PQBA 2PLSA 1WYGA 1HSKA 5HMRA 5AE3A 1UXYA 2RK5A 2WDWA 5ADZA 1FFVC 3AMZA 5HHZA 2Y3SA 4ZOHB 2GQUA 3JS8A 1ZXIC 4PVHA 3NS1B 1JRPA 4PVEA 3POPA 1N63C 3FW8A 1DIQA 2QKNA 3NRZB 2R8DA 2UUUA 4JB1A 2YVSA 3SR6B 1JROA 1N60C 4EC3A 1MBTA 5FXPA 1W1MA 1AHZA 1W1SA 4PVJA 3TX1A 3D2HA 2O3GA 1N61C 2VFSA 3RJAA 1E8HA 3S1EA 2BVHA 1RM6B 4MLAA 2Y08A 4PVKA 4DNSA 2Y3RA 5FXEA 3HRDC 4BBYA 3TSJA 5I1VA 1VAOA 2P4PA 5AE1A 1N5WC 5AWVA 1WVEA 1QLUA 5G5GB 1I19A 1W1JA 1FFUC 3D2JA 1W1OA 3DQ0A 4PZFA 3W8ZA 2E3TA 3GSYA 1FIQB 3W8XA 2W55A 4BC7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F0X A;  1SB3 B;  2P3H A;  1MBB A;  1W1Q A;  3W8W A;  2BVG A;  4HG0 A;  3BW7 A;  3I99 A;  2AXR A;  2MBR A;  2I0K A;  4BCA A;  4OAL A;  3NVW B;  1N5X A;  3AN1 A;  2EXR A;  3D2D A;  1W1L A;  1ZR6 A;  2Q85 A;  3ETR B;  1DII A;  2VFR A;  2VAO A;  3NVY B;  1DZN A;  1E8G A;  3LLB A;  1VDV A;  1E0Y A;  4PWB A;  1W1R A;  2GQT A;  1W1K A;  3TSH A;  4O95 A;  3KJM A;  3S1F A;  2W54 A;  5HQX A;  5FXD A;  2BVF A;  2W3R A;  3S1C A;  3PM9 A;  3VTE A;  3FW7 A;  3NVZ B;  1V97 A;  2P13 A;  1WVF A;  5G5H B;  1AHV A;  5D79 A;  3S1D A;  4ML8 A;  4UD8 A;  4JAY A;  3NVV B;  4BC9 A;  2VFU A;  4PYT A;  3FW9 A;  2NQW A;  3AM9 A;  2VFT A;  2VFV A;  4XLO A;  3EUB 3;  1FO4 A;  3FWA A;  3C0P A;  1T3Q C;  2OAI A;  1N62 C;  3B9J B;  3LAE A;  2QPM A;  5AE2 A;  5FXF A;  2PLI A;  4PWC A;  3DED A;  2R2Z A;  1AHU A;  2W3S A;  1QLT A;  2Q4W A;  1E8F A;  2PLS A;  1WYG A;  1HSK A;  5HMR A;  5AE3 A;  1UXY A;  2RK5 A;  5ADZ A;  1FFV C;  3AMZ A;  5HHZ A;  4ZOH B;  2GQU A;  3JS8 A;  1ZXI C;  4PVH A;  3NS1 B;  1JRP A;  4PVE A;  1N63 C;  3FW8 A;  1DIQ A;  2QKN A;  3NRZ B;  2R8D A;  4JB1 A;  2YVS A;  3SR6 B;  1JRO A;  1N60 C;  4EC3 A;  1MBT A;  5FXP A;  1W1M A;  1AHZ A;  1W1S A;  4PVJ A;  3TX1 A;  3D2H A;  2O3G A;  1N61 C;  2VFS A;  1E8H A;  3S1E A;  2BVH A;  1RM6 B;  4MLA A;  4PVK A;  4DNS A;  5FXE A;  3HRD C;  4BBY A;  3TSJ A;  1VAO A;  2P4P A;  5AE1 A;  1N5W C;  1WVE A;  1QLU A;  5G5G B;  1I19 A;  1W1J A;  1FFU C;  3D2J A;  1W1O A;  3DQ0 A;  4PZF A;  3W8Z A;  2E3T A;  3GSY A;  1FIQ B;  3W8X A;  2W55 A;  4BC7 A; 
#chains in the Genus database with same CATH topology
 1F0X A;  1SB3 B;  2P3H A;  1MBB A;  1W1Q A;  3W8W A;  2BVG A;  4HG0 A;  3BW7 A;  3I99 A;  2AXR A;  2MBR A;  2I0K A;  4BCA A;  3NVW B;  4OAL A;  1N5X A;  3AN1 A;  2EXR A;  3D2D A;  1W1L A;  3EJD B;  1ZR6 A;  2Q85 A;  2IPI A;  3ETR B;  1DII A;  2VFR A;  2VAO A;  3NVY B;  1DZN A;  3HSU A;  1E8G A;  3LLB A;  1VDV A;  1E0Y A;  4PWB A;  1W1R A;  2GQT A;  1W1K A;  3TSH A;  4O95 A;  3KJM A;  3S1F A;  2W54 A;  5HQX A;  5FXD A;  2BVF A;  2W3R A;  3S1C A;  5L6F A;  3PM9 A;  3VTE A;  3FW7 A;  3NVZ B;  1V97 A;  2P13 A;  1WVF A;  5G5H B;  1AHV A;  5D79 A;  3S1D A;  2Y4G A;  4ML8 A;  4UD8 A;  4JAY A;  3NVV B;  4BC9 A;  2VFU A;  4PYT A;  3FW9 A;  2NQW A;  3AM9 A;  2UUV A;  2VFT A;  2VFV A;  4XLO A;  3EUB 3;  1FO4 A;  3FWA A;  3C0P A;  5I1W A;  1T3Q C;  2OAI A;  5L6G A;  1N62 C;  3B9J B;  3RJ8 A;  3LAE A;  5K8E A;  2QPM A;  5AE2 A;  5FXF A;  2PLI A;  4PWC A;  3DED A;  2R2Z A;  1AHU A;  2W3S A;  1QLT A;  2Q4W A;  1E8F A;  3PQB A;  2PLS A;  1WYG A;  1HSK A;  5HMR A;  5AE3 A;  1UXY A;  2RK5 A;  2WDW A;  5ADZ A;  1FFV C;  3AMZ A;  5HHZ A;  2Y3S A;  4ZOH B;  2GQU A;  3JS8 A;  1ZXI C;  4PVH A;  3NS1 B;  1JRP A;  4PVE A;  3POP A;  1N63 C;  3FW8 A;  1DIQ A;  2QKN A;  3NRZ B;  2R8D A;  2UUU A;  4JB1 A;  2YVS A;  3SR6 B;  1JRO A;  1N60 C;  4EC3 A;  1MBT A;  5FXP A;  3EJE B;  1W1M A;  1AHZ A;  1W1S A;  4PVJ A;  3TX1 A;  3D2H A;  2O3G A;  1N61 C;  2VFS A;  3RJA A;  1E8H A;  3S1E A;  2BVH A;  1RM6 B;  4MLA A;  2Y08 A;  4PVK A;  4DNS A;  2Y3R A;  5FXE A;  3HRD C;  4BBY A;  3TSJ A;  5I1V A;  1VAO A;  2P4P A;  5AE1 A;  1N5W C;  5AWV A;  1WVE A;  1QLU A;  5G5G B;  1I19 A;  1W1J A;  1FFU C;  3D2J A;  1W1O A;  3DQ0 A;  4PZF A;  3W8Z A;  2E3T A;  3GSY A;  1FIQ B;  3W8X A;  2W55 A;  3EJB B;  4BC7 A; 
#chains in the Genus database with same CATH homology
 1F0X A;  1SB3 B;  2P3H A;  1MBB A;  1W1Q A;  3W8W A;  2BVG A;  4HG0 A;  3BW7 A;  3I99 A;  2AXR A;  2MBR A;  2I0K A;  4BCA A;  4OAL A;  3NVW B;  1N5X A;  3AN1 A;  2EXR A;  3D2D A;  1W1L A;  1ZR6 A;  2Q85 A;  2IPI A;  3ETR B;  1DII A;  2VFR A;  2VAO A;  3NVY B;  1DZN A;  3HSU A;  1E8G A;  3LLB A;  1VDV A;  1E0Y A;  4PWB A;  1W1R A;  2GQT A;  1W1K A;  3TSH A;  4O95 A;  3KJM A;  3S1F A;  2W54 A;  5HQX A;  5FXD A;  2BVF A;  2W3R A;  3S1C A;  5L6F A;  3PM9 A;  3VTE A;  3FW7 A;  3NVZ B;  1V97 A;  2P13 A;  1WVF A;  5G5H B;  1AHV A;  5D79 A;  3S1D A;  2Y4G A;  4ML8 A;  4UD8 A;  4JAY A;  3NVV B;  4BC9 A;  2VFU A;  4PYT A;  3FW9 A;  2NQW A;  3AM9 A;  2UUV A;  2VFT A;  2VFV A;  4XLO A;  3EUB 3;  1FO4 A;  3FWA A;  3C0P A;  5I1W A;  1T3Q C;  2OAI A;  5L6G A;  1N62 C;  3B9J B;  3RJ8 A;  3LAE A;  5K8E A;  2QPM A;  5AE2 A;  5FXF A;  2PLI A;  4PWC A;  3DED A;  2R2Z A;  1AHU A;  2W3S A;  1QLT A;  2Q4W A;  1E8F A;  3PQB A;  2PLS A;  1WYG A;  1HSK A;  5HMR A;  5AE3 A;  1UXY A;  2RK5 A;  2WDW A;  5ADZ A;  1FFV C;  3AMZ A;  5HHZ A;  2Y3S A;  4ZOH B;  2GQU A;  3JS8 A;  1ZXI C;  4PVH A;  3NS1 B;  1JRP A;  4PVE A;  3POP A;  1N63 C;  3FW8 A;  1DIQ A;  2QKN A;  3NRZ B;  2R8D A;  2UUU A;  4JB1 A;  2YVS A;  3SR6 B;  1JRO A;  1N60 C;  4EC3 A;  1MBT A;  5FXP A;  1W1M A;  1AHZ A;  1W1S A;  4PVJ A;  3TX1 A;  3D2H A;  2O3G A;  1N61 C;  2VFS A;  3RJA A;  1E8H A;  3S1E A;  2BVH A;  1RM6 B;  4MLA A;  2Y08 A;  4PVK A;  4DNS A;  2Y3R A;  5FXE A;  3HRD C;  4BBY A;  3TSJ A;  5I1V A;  1VAO A;  2P4P A;  5AE1 A;  1N5W C;  5AWV A;  1WVE A;  1QLU A;  5G5G B;  1I19 A;  1W1J A;  1FFU C;  3D2J A;  1W1O A;  3DQ0 A;  4PZF A;  3W8Z A;  2E3T A;  3GSY A;  1FIQ B;  3W8X A;  2W55 A;  4BC7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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