5G0IA

Crystal structure of danio rerio hdac6 cd1 and cd2 (linker cleaved) in complex with nexturastat a
Total Genus 294
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
294
sequence length
744
structure length
722
Chain Sequence
SKATGTGLVYVDAFTRFHCLWDASHPECPARVSTVMEMLETEGLLGRCVQVEARAVTEDELLLVHTKEYVELMKSTQNMTEEELKTLAEKYDSVYLHPGFFSSACLSVGSVLQLVDKVMTSQLRNGFSINRPPGHHAQADKMNGFCMFNNLAIAARYAQKRHRVQRVLIVDWDVHHGQGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKVGMESGDYITAFQQLLLPVAYEFQPQLVLVAAGFDAVIGDPKGGMQVSPECFSILTHMLKGVAQGRLVLALEGGYNLQSTAEGVCASMRSLLGDPCPHLPSSGAPCESALKSISKTISDLYPFWKSLQTFEPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLRVNI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell cycle
molecule keywords HDAC6
publication title Structural Insights Into Hdac6 Tubulin Deacetylation and its Selective Inhibition
pubmed doi rcsb
source organism Danio rerio
total genus 294
structure length 722
sequence length 744
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0iA02
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0iA01
3EW8A 5G0XA 4RN0A 4QA3A 5EFBD 5EEFA 1ZZ3A 4ZUQA 5G11A 2VCGA 1C3SA 3SFHA 5G1AA 4BKXB 3C10A 4BZ9A 1VKGA 3MZ3A 5EEMA 4A69A 1C3PA 5G1BA 5G13A 5EF8A 5G0HA 5D1CA 5DC6A 5FCWA 4QA0A 3F0RA 4QA4A 5ICNB 4BZ7A 3MZ4A 3F07A 3F06A 4LY1A 3Q9FA 1ZZ1A 4ZUNA 4ZURA 5THTA 4QA7A 4CQFA 5THVA 1T64A 5BWZA 1T67A 3ZNRA 2VQVA 3EZTA 5G12A 5G0YA 2VQMA 3ZNSA 2VQOA 4QA1A 1T69A 3Q9CA 4CBYA 1C3RA 5G0IA 5EF7A 2VQQA 1W22A 2V5XA 3C0YA 5EFNA 4BZ5A 5DC5A 5D1DA 5EENA 3MENA 3RQDA 5EEKA 5EFKB 3Q9EA 5IX0A 2VQWG 5JI5A 4RN1A 3EZPA 3EWFA 5G3WA 5THUA 5G10A 3MZ7A 5DC8A 5DC7A 3C0ZA 3MAXA 5EFJD 4QA2A 4ZUPA 5FUEA 5THSA 2V5WA 5EFGA 5G0GA 5IWGA 4QA6A 5G1CA 4RN2A 4LXZA 2GH6A 5G0JA 3Q9BA 2VQJA 4BZ8A 4ZUMA 4ZUOA 1ZZ0A 3SFFA 5A2SA 5G17A 5EFHA 3MZ6A 5D1BA 5EEIA 4BZ6A 5LI3A 4QA5A 4CBTA
chains in the Genus database with same CATH superfamily
2EIVA 3EW8A 4GWDA 5G0XA 4RN0A 1WVAA 4QA3A 4RHQA 5EFBD 4Q3VA 5EEFA 1ZPEA 1ZZ3A 4ZUQA 5G11A 2VCGA 1C3SA 2ZAVA 3SFHA 3MMRA 5G1AA 4BKXB 1D3VA 3C10A 3GN0A 3THHA 1VKGA 3KV2A 3LHLA 3MZ3A 4RHIA 5EEMA 3THEA 3THJA 1C3PA 1HQXA 4A69A 5G1BA 5G13A 4MYNA 3PZLA 5EF8A 5G0HA 1HQ5A 5D1CA 2EF5A 3E9BA 1TA1A 1ZPGA 5HJ9A 3SL1A 3SJTA 5DC6A 5FCWA 4QA0A 3F0RA 4QA4A 5ICNB 4BZ7A 3MJLA 4IXVA 3MZ4A 3F07A 1T5GA 3F06A 4LY1A 4HZEA 3F80A 1ZZ1A 3Q9FA 4ZUNA 4ZURA 5THTA 4RLAA 1T4TA 4QA7A 4CQFA 4MYFA 4MYLA 1WOHA 3NIQA 1P8OA 5THVA 4DZ4A 1T64A 1P8SA 4Q3TA 4GWCA 5BWZA 1T67A 5CEVA 4IE2A 1GQ7A 4Q3RC 3ZNRA 3E6VA 2VQVA 3GMZA 3TF3A 3EZTA 4IU4A 3NIPA 4GSVA 1T5FA 1P8NA 5G0YA 5G12A 4IE1A 2VQMA 4MXRA 3ZNSA 1WVBA 2VQOA 4IU5A 4IXUA 4Q42A 4Q3RA 1HQGA 4QA1A 1T69A 1T4SA 3DJ8A 3Q9CA 4CBYA 1C3RA 3LP4A 3M1RA 4Q3UA 2PHAA 5EF7A 5G0IA 3TH7A 1P8PA 2VQQA 4RHKA 1W22A 2V5XA 1GQ6A 2EF4A 3C0YA 5EFNA 1TBLA 4Q3QA 4BZ5A 4IE3A 5DC5A 1WOGA 5D1DA 2AEBA 5EENA 1PQ3A 3MENA 3RQDA 4RHMA 4CEVA 5EEKA 5EFKB 3Q9EA 5IX0A 4Q41A 1T4RA 2VQWG 4GSMA 2RLAA 4RHJA 4RN1A 5RLAA 5JI5A 3EZPA 1P8QA 3EWFA 5G3WA 3MFVA 5THUA 4Q40A 1R1OA 5G10A 3MZ7A 5DC8A 4Q3SA 1WOIA 5HJAA 5DC7A 4MYKA 3C0ZA 1T4PA 3MAXA 5EFJD 2A0MA 4QA2A 4GSZA 4ZUPA 5FUEA 5THSA 3RLAA 4BZ9A 2V5WA 3LP7A 4HXQA 3E8ZA 5EFGA 5G0GA 5IWGA 4QA6A 4FCIA 1XFKA 3NIOA 1CEVA 4ITYA 4RN2A 4LXZA 5G1CA 2GH6A 3CEVA 1RLAA 3MFWA 5G0JA 3Q9BA 2VQJA 4BZ8A 4G3HA 3E8QA 4FCKA 4ZUMA 2PHOA 3SKKA 4ZUOA 1ZZ0A 3SFFA 1HQHA 4RHLA 4HWWA 5A2SA 5G17A 2CEVA 5EFHA 3MZ6A 4IU1A 2PLLA 4IU0A 5D1BA 4I06A 3SL0A 4Q3PA 1HQFA 1P8MA 5EEIA 1TBJA 4BZ6A 5LI3A 1P8RA 3E6KA 4QA5A 4CBTA 1TBHA
chains in the Genus database with same CATH topology
3EW8A 5G0XA 4RN0A 4QA3A 5EFBD 5EEFA 1ZZ3A 4ZUQA 5G11A 2VCGA 1C3SA 3SFHA 5G1AA 4BKXB 3C10A 4BZ9A 1VKGA 3MZ3A 5EEMA 4A69A 1C3PA 5G1BA 5G13A 5EF8A 5G0HA 5D1CA 5DC6A 5FCWA 4QA0A 3F0RA 4QA4A 5ICNB 4BZ7A 3MZ4A 3F07A 3F06A 4LY1A 3Q9FA 1ZZ1A 4ZUNA 4ZURA 5THTA 4QA7A 4CQFA 5THVA 1T64A 5BWZA 1T67A 3ZNRA 2VQVA 3EZTA 5G12A 5G0YA 2VQMA 3ZNSA 2VQOA 4QA1A 1T69A 3Q9CA 4CBYA 1C3RA 5G0IA 5EF7A 2VQQA 1W22A 2V5XA 3C0YA 5EFNA 4BZ5A 5DC5A 5D1DA 5EENA 3MENA 3RQDA 5EEKA 5EFKB 3Q9EA 5IX0A 2VQWG 5JI5A 4RN1A 3EZPA 3EWFA 5G3WA 5THUA 5G10A 3MZ7A 5DC8A 5DC7A 3C0ZA 3MAXA 5EFJD 4QA2A 4ZUPA 5FUEA 5THSA 2V5WA 5EFGA 5G0GA 5IWGA 4QA6A 5G1CA 4RN2A 4LXZA 2GH6A 5G0JA 3Q9BA 2VQJA 4BZ8A 4ZUMA 4ZUOA 1ZZ0A 3SFFA 5A2SA 5G17A 5EFHA 3MZ6A 5D1BA 5EEIA 4BZ6A 5LI3A 4QA5A 4CBTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EW8 A;  5G0X A;  4RN0 A;  4QA3 A;  5EFB D;  5EEF A;  1ZZ3 A;  4ZUQ A;  5G11 A;  2VCG A;  1C3S A;  3SFH A;  5G1A A;  4BKX B;  3C10 A;  4BZ9 A;  1VKG A;  3MZ3 A;  5EEM A;  4A69 A;  1C3P A;  5G1B A;  5G13 A;  5EF8 A;  5G0H A;  5D1C A;  5DC6 A;  5FCW A;  4QA0 A;  3F0R A;  4QA4 A;  5ICN B;  4BZ7 A;  3MZ4 A;  3F07 A;  3F06 A;  4LY1 A;  3Q9F A;  1ZZ1 A;  4ZUN A;  4ZUR A;  5THT A;  4QA7 A;  4CQF A;  5THV A;  1T64 A;  5BWZ A;  1T67 A;  3ZNR A;  2VQV A;  3EZT A;  5G12 A;  5G0Y A;  2VQM A;  3ZNS A;  2VQO A;  4QA1 A;  1T69 A;  3Q9C A;  4CBY A;  1C3R A;  5G0I A;  5EF7 A;  2VQQ A;  1W22 A;  2V5X A;  3C0Y A;  5EFN A;  4BZ5 A;  5DC5 A;  5D1D A;  5EEN A;  3MEN A;  3RQD A;  5EEK A;  5EFK B;  3Q9E A;  5IX0 A;  2VQW G;  5JI5 A;  4RN1 A;  3EZP A;  3EWF A;  5G3W A;  5THU A;  5G10 A;  3MZ7 A;  5DC8 A;  5DC7 A;  3C0Z A;  3MAX A;  5EFJ D;  4QA2 A;  4ZUP A;  5FUE A;  5THS A;  2V5W A;  5EFG A;  5G0G A;  5IWG A;  4QA6 A;  5G1C A;  4RN2 A;  4LXZ A;  2GH6 A;  5G0J A;  3Q9B A;  2VQJ A;  4BZ8 A;  4ZUM A;  4ZUO A;  1ZZ0 A;  3SFF A;  5A2S A;  5G17 A;  5EFH A;  3MZ6 A;  5D1B A;  5EEI A;  4BZ6 A;  5LI3 A;  4QA5 A;  4CBT A; 
#chains in the Genus database with same CATH topology
 2EIV A;  3EW8 A;  4GWD A;  5G0X A;  4RN0 A;  1WVA A;  4QA3 A;  4RHQ A;  5EFB D;  4Q3V A;  5EEF A;  1ZPE A;  1ZZ3 A;  4ZUQ A;  5G11 A;  2VCG A;  1C3S A;  2ZAV A;  3SFH A;  3MMR A;  5G1A A;  4BKX B;  1D3V A;  3C10 A;  3GN0 A;  3THH A;  1VKG A;  3KV2 A;  3LHL A;  3MZ3 A;  4RHI A;  5EEM A;  3THE A;  3THJ A;  1C3P A;  1HQX A;  4A69 A;  5G1B A;  5G13 A;  4MYN A;  3PZL A;  5EF8 A;  5G0H A;  1HQ5 A;  5D1C A;  2EF5 A;  3E9B A;  1TA1 A;  1ZPG A;  5HJ9 A;  3SL1 A;  3SJT A;  5DC6 A;  5FCW A;  4QA0 A;  3F0R A;  4QA4 A;  5ICN B;  4BZ7 A;  3MJL A;  4IXV A;  3MZ4 A;  3F07 A;  1T5G A;  3F06 A;  4LY1 A;  4HZE A;  3F80 A;  1ZZ1 A;  3Q9F A;  4ZUN A;  4ZUR A;  5THT A;  4RLA A;  1T4T A;  4QA7 A;  4CQF A;  4MYF A;  4MYL A;  1WOH A;  3NIQ A;  1P8O A;  5THV A;  4DZ4 A;  1T64 A;  1P8S A;  4Q3T A;  4GWC A;  5BWZ A;  1T67 A;  5CEV A;  4IE2 A;  1GQ7 A;  4Q3R C;  3ZNR A;  3E6V A;  2VQV A;  3GMZ A;  3TF3 A;  3EZT A;  4IU4 A;  3NIP A;  4GSV A;  1T5F A;  1P8N A;  5G0Y A;  5G12 A;  4IE1 A;  2VQM A;  4MXR A;  3ZNS A;  1WVB A;  2VQO A;  4IU5 A;  4IXU A;  4Q42 A;  4Q3R A;  1HQG A;  4QA1 A;  1T69 A;  1T4S A;  3DJ8 A;  3Q9C A;  4CBY A;  1C3R A;  3LP4 A;  3M1R A;  4Q3U A;  2PHA A;  5EF7 A;  5G0I A;  3TH7 A;  1P8P A;  2VQQ A;  4RHK A;  1W22 A;  2V5X A;  1GQ6 A;  2EF4 A;  3C0Y A;  5EFN A;  1TBL A;  4Q3Q A;  4BZ5 A;  4IE3 A;  5DC5 A;  1WOG A;  5D1D A;  2AEB A;  5EEN A;  1PQ3 A;  3MEN A;  3RQD A;  4RHM A;  4CEV A;  5EEK A;  5EFK B;  3Q9E A;  5IX0 A;  4Q41 A;  1T4R A;  2VQW G;  4GSM A;  2RLA A;  4RHJ A;  4RN1 A;  5RLA A;  5JI5 A;  3EZP A;  1P8Q A;  3EWF A;  5G3W A;  3MFV A;  5THU A;  4Q40 A;  1R1O A;  5G10 A;  3MZ7 A;  5DC8 A;  4Q3S A;  1WOI A;  5HJA A;  5DC7 A;  4MYK A;  3C0Z A;  1T4P A;  3MAX A;  5EFJ D;  2A0M A;  4QA2 A;  4GSZ A;  4ZUP A;  5FUE A;  5THS A;  3RLA A;  4BZ9 A;  2V5W A;  3LP7 A;  4HXQ A;  3E8Z A;  5EFG A;  5G0G A;  5IWG A;  4QA6 A;  4FCI A;  1XFK A;  3NIO A;  1CEV A;  4ITY A;  4RN2 A;  4LXZ A;  5G1C A;  2GH6 A;  3CEV A;  1RLA A;  3MFW A;  5G0J A;  3Q9B A;  2VQJ A;  4BZ8 A;  4G3H A;  3E8Q A;  4FCK A;  4ZUM A;  2PHO A;  3SKK A;  4ZUO A;  1ZZ0 A;  3SFF A;  1HQH A;  4RHL A;  4HWW A;  5A2S A;  5G17 A;  2CEV A;  5EFH A;  3MZ6 A;  4IU1 A;  2PLL A;  4IU0 A;  5D1B A;  4I06 A;  3SL0 A;  4Q3P A;  1HQF A;  1P8M A;  5EEI A;  1TBJ A;  4BZ6 A;  5LI3 A;  1P8R A;  3E6K A;  4QA5 A;  4CBT A;  1TBH A; 
#chains in the Genus database with same CATH homology
 3EW8 A;  5G0X A;  4RN0 A;  4QA3 A;  5EFB D;  5EEF A;  1ZZ3 A;  4ZUQ A;  5G11 A;  2VCG A;  1C3S A;  3SFH A;  5G1A A;  4BKX B;  3C10 A;  4BZ9 A;  1VKG A;  3MZ3 A;  5EEM A;  4A69 A;  1C3P A;  5G1B A;  5G13 A;  5EF8 A;  5G0H A;  5D1C A;  5DC6 A;  5FCW A;  4QA0 A;  3F0R A;  4QA4 A;  5ICN B;  4BZ7 A;  3MZ4 A;  3F07 A;  3F06 A;  4LY1 A;  3Q9F A;  1ZZ1 A;  4ZUN A;  4ZUR A;  5THT A;  4QA7 A;  4CQF A;  5THV A;  1T64 A;  5BWZ A;  1T67 A;  3ZNR A;  2VQV A;  3EZT A;  5G12 A;  5G0Y A;  2VQM A;  3ZNS A;  2VQO A;  4QA1 A;  1T69 A;  3Q9C A;  4CBY A;  1C3R A;  5G0I A;  5EF7 A;  2VQQ A;  1W22 A;  2V5X A;  3C0Y A;  5EFN A;  4BZ5 A;  5DC5 A;  5D1D A;  5EEN A;  3MEN A;  3RQD A;  5EEK A;  5EFK B;  3Q9E A;  5IX0 A;  2VQW G;  5JI5 A;  4RN1 A;  3EZP A;  3EWF A;  5G3W A;  5THU A;  5G10 A;  3MZ7 A;  5DC8 A;  5DC7 A;  3C0Z A;  3MAX A;  5EFJ D;  4QA2 A;  4ZUP A;  5FUE A;  5THS A;  2V5W A;  5EFG A;  5G0G A;  5IWG A;  4QA6 A;  5G1C A;  4RN2 A;  4LXZ A;  2GH6 A;  5G0J A;  3Q9B A;  2VQJ A;  4BZ8 A;  4ZUM A;  4ZUO A;  1ZZ0 A;  3SFF A;  5A2S A;  5G17 A;  5EFH A;  3MZ6 A;  5D1B A;  5EEI A;  4BZ6 A;  5LI3 A;  4QA5 A;  4CBT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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